A. Keith Dunker

Publication Activity (10 Years)

Years Active: 1994-2022
Publications (10 Years): 12

Top Topics

Intrinsically Disordered

Infectious Disease

Protein Structure

Top Venues

Nucleic Acids Res.

Publications

Shehab S. Ahmed, Zaara T. Rifat, Ruchi Lohia, Arthur J. Campbell, A. Keith Dunker, M. Sohel Rahman, Sumaiya Iqbal
Characterization of intrinsically disordered regions in proteins informed by human genetic diversity. PLoS Comput. Biol. 18 (3) (2022)
Gil Alterovitz, Wei-Lun Alterovitz, Gail H. Cassell, Lixin Zhang, A. Keith Dunker
AI for infectious disease modelling and therapeutics. PSB (2021)
Bi Zhao, Akila Katuwawala, Christopher J. Oldfield, A. Keith Dunker, Eshel Faraggi, Jörg Gsponer, Andrzej Kloczkowski, Nawar Malhis, Milot Mirdita, Zoran Obradovic, Johannes Söding, Martin Steinegger, Yaoqi Zhou, Lukasz A. Kurgan
DescribePROT: database of amino acid-level protein structure and function predictions. Nucleic Acids Res. 49 (Database-Issue) (2021)
Gerard Kian-Meng Goh, A. Keith Dunker, James A. Foster, Vladimir N. Uversky
Feasibility of the vaccine development for SARS-CoV-2 and other viruses using the shell disorder analysis. PSB (2021)
Wei-Lun Alterovitz, Eshel Faraggi, Christopher J. Oldfield, Jingwei Meng, Bin Xue, Fei Huang, Pedro Romero, Andrzej Kloczkowski, Vladimir N. Uversky, A. Keith Dunker
Many-to-One Binding by Intrinsically Disordered Protein Regions. PSB (2020)
Lukasz A. Kurgan, Predrag Radivojac, Joel L. Sussman, A. Keith Dunker
Session Introduction. PSB (2020)
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Marylyn D. Ritchie, Tiffany Murray, Teri E. Klein
Biocomputing 2021: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 3-7, 2021 PSB (2020)
András Hatos, Borbála Hajdu-Soltész, Alexander Miguel Monzon, Nicolas Palopoli, Lucía Álvarez, Burcu Aykaç Fas, Claudio Bassot, Guillermo I. Benítez, Martina Bevilacqua, Anastasia Chasapi, Lucía B. Chemes, Norman E. Davey, Radoslav Davidovic, A. Keith Dunker, Arne Elofsson, Julien Gobeill, Nicolás S. González Foutel, Govindarajan Sudha, Mainak Guharoy, Tamás Horváth, Valentin Iglesias, Andrey V. Kajava, Orsolya P. Kovács, John Lamb, Matteo Lambrughi, Tamas Lazar, Jeremy Y. Leclercq, Emanuela Leonardi, Sandra Macedo-Ribeiro, Mauricio Macossay-Castillo, Emiliano Maiani, José A. Manso, Cristina Marino Buslje, Elizabeth Martínez-Pérez, Bálint Mészáros, Ivan Micetic, Giovanni Minervini, Nikoletta Murvai, Marco Necci, Christos A. Ouzounis, Mátyás Pajkos, Lisanna Paladin, Rita Pancsa, Elena Papaleo, Gustavo D. Parisi, Emilie Pasche, Pedro J. Barbosa Pereira, Vasilis J. Promponas, Jordi Pujols, Federica Quaglia, Patrick Ruch, Marco Salvatore, Éva Schád, Beáta Szabó, Tamás Szaniszló, Stella Tamana, Ágnes Tantos, Nevena Veljkovic, Salvador Ventura, Wim F. Vranken, Zsuzsanna Dosztányi, Peter Tompa, Silvio C. E. Tosatto, Damiano Piovesan
DisProt: intrinsic protein disorder annotation in 2020. Nucleic Acids Res. 48 (Database-Issue) (2020)
Eshel Faraggi, A. Keith Dunker, Robert L. Jernigan, Andrzej Kloczkowski
Entropy, Fluctuations, and Disordered Proteins. Entropy 21 (8) (2019)
Jianhong Zhou, Christopher J. Oldfield, Fei Huang, Wenying Yan, Bairong Shen, A. Keith Dunker
Identification of intrinsic disorder in complexes from Protein Data Bank. ICCABS (2018)
Damiano Piovesan, Francesco Tabaro, Ivan Micetic, Marco Necci, Federica Quaglia, Christopher J. Oldfield, Maria Cristina Aspromonte, Norman E. Davey, Radoslav Davidovic, Zsuzsanna Dosztányi, Arne Elofsson, Alessandra Gasparini, András Hatos, Andrey V. Kajava, Lajos Kalmár, Emanuela Leonardi, Tamas Lazar, Sandra Macedo-Ribeiro, Mauricio Macossay-Castillo, Attila Meszaros, Giovanni Minervini, Nikoletta Murvai, Jordi Pujols, Daniel B. Roche, Edoardo Salladini, Éva Schád, Antoine Schramm, Beáta Szabó, Ágnes Tantos, Fiorella Tonello, Konstantinos D. Tsirigos, Nevena Veljkovic, Salvador Ventura, Wim F. Vranken, Per Warholm, Vladimir N. Uversky, A. Keith Dunker, Sonia Longhi, Peter Tompa, Silvio C. E. Tosatto
DisProt 7.0: a major update of the database of disordered proteins. Nucleic Acids Res. 45 (Database-Issue) (2017)
Fei Huang, Christopher J. Oldfield, Bin Xue, Wei-Lun Hsu, Jingwei Meng, Xiaowen Liu, Li Shen, Pedro Romero, Vladimir N. Uversky, A. Keith Dunker
Erratum to: Improving protein order-disorder classification using charge-hydropathy plots. BMC Bioinform. 16 (2015)
William Yang, Kenji Yoshigoe, Xiang Qin, Jun S. Liu, Jack Y. Yang, Andrzej Niemierko, Youping Deng, Yunlong Liu, A. Keith Dunker, Zhongxue Chen, Liangjiang Wang, Dong Xu, Hamid R. Arabnia, Weida Tong, Mary Qu Yang
Identification of genes and pathways involved in kidney renal clear cell carcinoma. BMC Bioinform. 15 (S-17) (2014)
Mihaly Varadi, Simone Kosol, Pierre Lebrun, Erica Valentini, Martin Blackledge, A. Keith Dunker, Isabella C. Felli, Julie D. Forman-Kay, Richard W. Kriwacki, Roberta Pierattelli, Joel L. Sussman, Dmitri I. Svergun, Vladimir N. Uversky, Michele Vendruscolo, David S. Wishart, Peter E. Wright, Peter Tompa
pE-DB: a database of structural ensembles of intrinsically disordered and of unfolded proteins. Nucleic Acids Res. 42 (Database-Issue) (2014)
Fei Huang, Christopher J. Oldfield, Bin Xue, Wei-Lun Hsu, Jingwei Meng, Xiaowen Liu, Li Shen, Pedro Romero, Vladimir N. Uversky, A. Keith Dunker
Improving protein order-disorder classification using charge-hydropathy plots. BMC Bioinform. 15 (S-17) (2014)
Jack Y. Yang, A. Keith Dunker, Jun S. Liu, Xiang Qin, Hamid R. Arabnia, William Yang, Andrzej Niemierko, Zhongxue Chen, Zuojie Luo, Liangjiang Wang, Yunlong Liu, Dong Xu, Youping Deng, Weida Tong, Mary Qu Yang
Advances in translational bioinformatics facilitate revealing the landscape of complex disease mechanisms. BMC Bioinform. 15 (S-17) (2014)
Matt E. Oates, Pedro Romero, Takashi Ishida, Mohamed F. Ghalwash, Marcin J. Mizianty, Bin Xue, Zsuzsanna Dosztányi, Vladimir N. Uversky, Zoran Obradovic, Lukasz A. Kurgan, A. Keith Dunker, Julian Gough
: database of disordered protein predictions. Nucleic Acids Res. 41 (Database-Issue) (2013)
Jianhan Chen, Jianlin Cheng, A. Keith Dunker
Session introduction. Pacific Symposium on Biocomputing (2012)
Wei-Lun Hsu, Christopher J. Oldfield, Jingwei Meng, Fei Huang, Bin Xue, Vladimir N. Uversky, Pedro Romero, A. Keith Dunker
Intrinsic Protein Disorder and Protein-Protein Interactions. Pacific Symposium on Biocomputing (2012)
Fei Huang, Christopher J. Oldfield, Jingwei Meng, Wei-Lun Hsu, Bin Xue, Vladimir N. Uversky, Pedro Romero, A. Keith Dunker
Subclassifying Disordered Proteins by the CH-CDF Plot Method. Pacific Symposium on Biocomputing (2012)
Fatemeh Miri Disfani, Wei-Lun Hsu, Marcin J. Mizianty, Christopher J. Oldfield, Bin Xue, A. Keith Dunker, Vladimir N. Uversky, Lukasz A. Kurgan
MoRFpred, a computational tool for sequence-based prediction and characterization of short disorder-to-order transitioning binding regions in proteins. Bioinform. 28 (12) (2012)
Marcin J. Mizianty, Tuo Zhang, Bin Xue, Yaoqi Zhou, A. Keith Dunker, Vladimir N. Uversky, Lukasz A. Kurgan
In-silico prediction of disorder content using hybrid sequence representation. BMC Bioinform. 12 (2011)
Bin Xue, Robert W. Williams, Christopher J. Oldfield, A. Keith Dunker, Vladimir N. Uversky
Archaic chaos: intrinsically disordered proteins in Archaea. BMC Syst. Biol. 4 (S-1) (2010)
Jianjiong Gao, Ganesh Kumar Agrawal, Jay J. Thelen, Zoran Obradovic, A. Keith Dunker, Dong Xu
A New Machine Learning Approach for Protein Phosphorylation Site Prediction in Plants. BICoB (2009)
Uros Midic, A. Keith Dunker, Zoran Obradovic
Protein sequence alignment and structural disorder: a substitution matrix for an extended alphabet. KDD Workshop on Statistical and Relational Learning in Bioinformatics (2009)
Ágnes Tóth-Petróczy, Christopher J. Oldfield, István Simon, Yuichiro Takagi, A. Keith Dunker, Vladimir N. Uversky, Mónika Fuxreiter
Malleable Machines in Transcription Regulation: The Mediator Complex. PLoS Comput. Biol. 4 (12) (2008)
A. Keith Dunker
Protein Intrinsic Disorder, Cell Signaling, Drug Discovery, and Alternative Splicing. BIOCOMP (2007)
Vladimir N. Uversky, Christopher J. Oldfield, A. Keith Dunker
Intrinsically Disordered Proteins in Human Diseases. BIBE (2007)
Vladimir Vacic, Vladimir N. Uversky, A. Keith Dunker, Stefano Lonardi
Composition Profiler: a tool for discovery and visualization of amino acid composition differences. BMC Bioinform. 8 (2007)
Uros Midic, A. Keith Dunker, Zoran Obradovic
Exploring alternative knowledge representations for protein secondary-structure prediction. Int. J. Data Min. Bioinform. 1 (3) (2007)
A. Keith Dunker, Christopher J. Oldfield, Jingwei Meng, Pedro Romero, Jack Y. Yang, Zoran Obradovic, Vladimir N. Uversky
Intrinsically Disordered Proteins: Predictions and Applications. BIBE (2007)
A. Keith Dunker, Christopher J. Oldfield, Jingwei Meng, Pedro Romero, Jack Y. Yang, Zoran Obradovic, Vladimir N. Uversky
Intrinsically Disordered Proteins: An Update. BIBE (2007)
Megan Sickmeier, Justin A. Hamilton, Tanguy LeGall, Vladimir Vacic, Marc S. Cortese, Ágnes Tantos, Beáta Szabó, Peter Tompa, Jake Yue Chen, Vladimir N. Uversky, Zoran Obradovic, A. Keith Dunker
DisProt: the Database of Disordered Proteins. Nucleic Acids Res. 35 (Database-Issue) (2007)
Christopher J. Oldfield, Jingwei Meng, Jack Y. Yang, Vladimir N. Uversky, A. Keith Dunker
Intrinsic Disorder in Protein-Protein Interaction Networks: Case Studies of Complexes Involving p53 and 14-3-3. BIOCOMP (2007)
Kang Peng, Predrag Radivojac, Slobodan Vucetic, A. Keith Dunker, Zoran Obradovic
Length-dependent prediction of protein intrinsic disorder. BMC Bioinform. 7 (2006)
Uros Midic, A. Keith Dunker, Zoran Obradovic
Improving Protein Secondary-Structure Prediction by Predicting Ends of Secondary-Structure Segments. CIBCB (2005)
Kang Peng, Slobodan Vucetic, Predrag Radivojac, Celeste J. Brown, A. Keith Dunker, Zoran Obradovic
Optimizing Long Intrinsic Disorder Predictors with Protein Evolutionary Information. J. Bioinform. Comput. Biol. 3 (1) (2005)
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein
Preface. Pacific Symposium on Biocomputing (2005)
Kenneth Daily, Predrag Radivojac, A. Keith Dunker
Intrinsic Disorder and Protein modifications: Building an SVM Predictor for Methylation. CIBCB (2005)
Slobodan Vucetic, Zoran Obradovic, Vladimir Vacic, Predrag Radivojac, Kang Peng, Lilia M. Iakoucheva, Marc S. Cortese, J. David Lawson, Celeste J. Brown, Jason G. Sikes, Crystal D. Newton, A. Keith Dunker
DisProt: a database of protein disorder. Bioinform. 21 (1) (2005)
Predrag Radivojac, Zoran Obradovic, A. Keith Dunker, Slobodan Vucetic
Feature Selection Filters Based on the Permutation Test. ECML (2004)
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein
Preface. Pacific Symposium on Biocomputing (2004)
Predrag Radivojac, Nitesh V. Chawla, A. Keith Dunker, Zoran Obradovic
Classification and knowledge discovery in protein databases. J. Biomed. Informatics 37 (4) (2004)
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein
Preface. Pacific Symposium on Biocomputing (2003)
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein
Special Paper - Introduction. Pacific Symposium on Biocomputing (2003)
Predrag Radivojac, Zoran Obradovic, Celeste J. Brown, A. Keith Dunker
Prediction of Boundaries Between Intrinsically Ordered and Disordered Protein Regions. Pacific Symposium on Biocomputing (2003)
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein
Preface. Pacific Symposium on Biocomputing (2002)
Predrag Radivojac, Zoran Obradovic, Celeste J. Brown, A. Keith Dunker
Improving Sequence Alignments For Intrinsically Disordered Proteins. Pacific Symposium on Biocomputing (2002)
R. M. Williams, Zoran Obradovic, V. Mathura, W. Braun, E. C. Garner, J. Young, S. Takayama, Celeste J. Brown, A. Keith Dunker
The Protein Non-Folding Problem: Amino Acid Determinants of Intrinsic Order and Disorder. Pacific Symposium on Biocomputing (2001)
Clay Bracken, Malin M. Young, A. Keith Dunker
Disorder and Flexibility in Protein Structure and Function - Session Introduction. Pacific Symposium on Biocomputing (2001)
Pedro Romero, Zoran Obradovic, A. Keith Dunker
Intelligent Data Analysis for Protein Disorder Prediction. Artif. Intell. Rev. 14 (6) (2000)
C. Kissinger, A. Keith Dunker, Eugene I. Shakhnovich
Disorder in Protein Structure and Function - Session Introduction. Pacific Symposium on Biocomputing (1999)
Pedro Romero, Zoran Obradovic, C. Kissinger, J. E. Villafranca, A. Keith Dunker
Identifying disordered regions in proteins from amino acid sequence. ICNN (1997)
A. Keith Dunker, Richard H. Lathrop
Protein Structure Prediction: Introductios. HICSS (5) (1994)
R. T. Miller, Richard J. Douthart, A. Keith Dunker
Identifying Repeated Structural Elements in Folded Proteins. HICSS (5) (1994)