Andrzej Kloczkowski

Publication Activity (10 Years)

Years Active: 2004-2024
Publications (10 Years): 21

Top Topics

Protein Tertiary Structure

Multiobjective Optimization

Top Venues

Publications

Saba Shahzadi, Mubashir Hassan, Andrzej Kloczkowski
Bioinformatics Analysis Provides Insight into the Identification of miRNAs as Transcriptional Regulators in Respiratory Syncytial Virus Infection. IWBBIO (1) (2024)
Saba Shahzadi, Mubashir Hassan, Andrzej Kloczkowski
Structural Analysis of RNA-Binding Protein EWSR1 Involved in Ewing's Sarcoma Through Domain Assembly and Conformational Molecular Dynamics Studies. IWBBIO (1) (2023)
Andrzej Kloczkowski, Juan Luis Fernández Martínez, Zulima Fernández-Muñiz
Computational Models for COVID-19 Dynamics Prediction. ICAISC (2) (2023)
Óscar Álvarez-Machancoses, Eshel Faraggi, Enrique J. de Andrés-Galiana, Juan Luis Fernández Martínez, Andrzej Kloczkowski
Prediction of Functional Effects of Protein Amino Acid Mutations. IWBBIO (2) (2023)
Mubashir Hassan, Saba Shahzadi, Andrzej Kloczkowski
Pharmacoinformatic Analysis of Drug Leads for Alzheimer's Disease from FDA-Approved Dataset Through Drug Repositioning Studies. IWBBIO (1) (2023)
Enrique J. deAndrés-Galiana, Juan Luis Fernández Martínez, Óscar Álvarez-Machancoses, Guillermina Bea, Carlos M. Galmarini, Andrzej Kloczkowski
Analysis of transcriptomic responses to SARS-CoV-2 reveals plausible defective pathways responsible for increased susceptibility to infection and complications and helps to develop fast-track repositioning of drugs against COVID-19. Comput. Biol. Medicine 149 (2022)
Bi Zhao, Akila Katuwawala, Christopher J. Oldfield, A. Keith Dunker, Eshel Faraggi, Jörg Gsponer, Andrzej Kloczkowski, Nawar Malhis, Milot Mirdita, Zoran Obradovic, Johannes Söding, Martin Steinegger, Yaoqi Zhou, Lukasz A. Kurgan
DescribePROT: database of amino acid-level protein structure and function predictions. Nucleic Acids Res. 49 (Database-Issue) (2021)
Wei-Lun Alterovitz, Eshel Faraggi, Christopher J. Oldfield, Jingwei Meng, Bin Xue, Fei Huang, Pedro Romero, Andrzej Kloczkowski, Vladimir N. Uversky, A. Keith Dunker
Many-to-One Binding by Intrinsically Disordered Protein Regions. PSB (2020)
Óscar Álvarez-Machancoses, Enrique J. deAndrés-Galiana, Juan Luis Fernández Martínez, Andrzej Kloczkowski
The Utilization of Different Classifiers to Perform Drug Repositioning in Inclusion Body Myositis Supports the Concept of Biological Invariance. ICAISC (1) (2020)
Fran Sérgio Lobato, Gustavo Barbosa Libotte, Gustavo Mendes Platt, Andrzej Kloczkowski
Identification of an Epidemiological Model to Simulate the COVID-19 Epidemic Using Robust Multiobjective Optimization and Stochastic Fractal Search. Comput. Math. Methods Medicine 2020 (2020)
Girik Malik, Anirban Banerji, Maksim Kouza, Irina Alexandra Buhimschi, Andrzej Kloczkowski
Deciphering General Characteristics of Residues Constituting Allosteric Communication Paths. IWBBIO (2) (2019)
Michael T. Zimmermann, Fadi Towfic, Robert L. Jernigan, Andrzej Kloczkowski
Characteristics of Protein Fold Space Exhibits Close Dependence on Domain Usage. IWBBIO (1) (2019)
Eshel Faraggi, A. Keith Dunker, Robert L. Jernigan, Andrzej Kloczkowski
Entropy, Fluctuations, and Disordered Proteins. Entropy 21 (8) (2019)
Óscar Álvarez, Juan Luis Fernández Martínez, Celia Fernández-Brillet, Ana Cernea, Zulima Fernández-Muñiz, Andrzej Kloczkowski
Principal component analysis in protein tertiary structure prediction. J. Bioinform. Comput. Biol. 16 (2) (2018)
Óscar Álvarez, Juan Luis Fernández Martínez, Ana Cernea, María Zulima Fernández-Muñiz, Andrzej Kloczkowski
Protein Tertiary Structure Prediction via SVD and PSO Sampling. IWBBIO (1) (2018)
Óscar Álvarez, Juan Luis Fernández Martínez, Celia Fernández-Brillet, Ana Cernea, Zulima Fernández-Muñiz, Andrzej Kloczkowski
On the Use of Principal Component Analysis and Particle Swarm Optimization in Protein Tertiary Structure Prediction. ICAISC (2) (2018)
Sumudu P. Leelananda, Andrzej Kloczkowski, Robert L. Jernigan
Fold-specific sequence scoring improves protein sequence matching. BMC Bioinform. 17 (2016)
Shamima Rashid, Saras Saraswathi, Andrzej Kloczkowski, Suresh Sundaram, Andrzej Kolinski
Protein secondary structure prediction using a small training set (compact model) combined with a Complex-valued neural network approach. BMC Bioinform. 17 (2016)
Sumudu P. Leelananda, Robert L. Jernigan, Andrzej Kloczkowski
Predicting Designability of Small Proteins from Graph Features of Contact Maps. J. Comput. Biol. 23 (5) (2016)
Sumudu P. Leelananda, Robert L. Jernigan, Andrzej Kloczkowski
Exploration of Designability of Proteins Using Graph Features of Contact Maps: Beyond Lattice Models. RECOMB (2015)
Vasily Sachnev, Saras Saraswathi, Rashid Niaz, Andrzej Kloczkowski, Suresh Sundaram
Multi-class BCGA-ELM based classifier that identifies biomarkers associated with hallmarks of cancer. BMC Bioinform. 16 (2015)
Pawel Gniewek, Andrzej Kolinski, Andrzej Kloczkowski, Dominik Gront
BioShell-Threading: versatile Monte Carlo package for protein 3D threading. BMC Bioinform. 15 (2014)
Saras Saraswathi, B. S. Mahanand, Andrzej Kloczkowski, Suresh Sundaram, N. Sundararajan
Detection of onset of Alzheimer's disease from MRI images using a GA-ELM-PSO classifier. CIMI (2013)
Yuanyuan Huang, Steve Bonett, Andrzej Kloczkowski, Robert L. Jernigan, Zhijun Wu
P.R.E.S.S. - an R-package for Exploring Residual-Level protein Structural Statistics. J. Bioinform. Comput. Biol. 10 (3) (2012)
Juan Luis Fernández Martínez, Esperanza García Gonzalo, Saras Saraswathi, Robert L. Jernigan, Andrzej Kloczkowski
Particle Swarm Optimization: A Powerful Family of Stochastic Optimizers. Analysis, Design and Application to Inverse Modelling. ICSI (1) (2011)
Michael T. Zimmermann, Andrzej Kloczkowski, Robert L. Jernigan
MAVEN: Motion Analysis and Visualization of Elastic Networks and Structural Ensembles. BMC Bioinform. 12 (2011)
Yuanyuan Huang, Steve Bonett, Andrzej Kloczkowski, Robert L. Jernigan, Zhijun Wu
P.R.E.S.S. - An R-package for exploring residual-level protein structural statistics. BIBM Workshops (2011)
Ataur R. Katebi, Pawel Gniewek, Michael T. Zimmermann, Saras Saraswathi, Zhenming Gong, Christopher K. Tuggle, Andrzej Kloczkowski, Robert L. Jernigan
Immunological implications of a structural analysis of two different porcine IL1β proteins expressed in macrophages and embryos. BCB (2010)
Michael T. Zimmermann, Aris Skliros, Saras Saraswathi, Andrzej Kloczkowski, Robert L. Jernigan
Immunoglobulin functional motions and their effects on the complementarity determining regions. BCB (2010)
Yaping Feng, Andrzej Kloczkowski, Robert L. Jernigan
Potentials 'R'Us web-server for protein energy estimations with coarse-grained knowledge-based potentials. BMC Bioinform. 11 (2010)
Saras Saraswathi, Andrzej Kloczkowski, Robert L. Jernigan
An Extreme Learning Machine Classifier for Prediction of Relative Solvent Accessibility in Proteins. IJCCI (ICFC-ICNC) (2010)
Saras Saraswathi, Robert L. Jernigan, Andrzej Kloczkowski, Andrzej Kolinski
Protein Secondary Structure Prediction using Knowledge-based Potentials. IJCCI (ICFC-ICNC) (2010)
Myron Peto, Andrzej Kloczkowski, Vasant G. Honavar, Robert L. Jernigan
Use of machine learning algorithms to classify binary protein sequences as highly-designable or poorly-designable. BMC Bioinform. 9 (2008)
Haitao Cheng, Taner Z. Sen, Robert L. Jernigan, Andrzej Kloczkowski
Consensus Data Mining (CDM) Protein Secondary Structure Prediction Server: Combining GOR V and Fragment Database Mining (FDM). Bioinform. 23 (19) (2007)
Taner Z. Sen, Andrzej Kloczkowski, Robert L. Jernigan
Functional clustering of yeast proteins from the protein-protein interaction network. BMC Bioinform. 7 (2006)
Taner Z. Sen, Robert L. Jernigan, Jean Garnier, Andrzej Kloczkowski
GOR V server for protein secondary structure prediction. Bioinform. 21 (11) (2005)
Taner Z. Sen, Andrzej Kloczkowski, Robert L. Jernigan, Changhui Yan, Vasant G. Honavar, Kai-Ming Ho, Cai-Zhuang Wang, Yungok Ihm, Haibo Cao, Xun Gu, Drena Dobbs
Predicting binding sites of hydrolase-inhibitor complexes by combining several methods. BMC Bioinform. 5 (2004)