Emilie Pasche

Publication Activity (10 Years)

Years Active: 2009-2023
Publications (10 Years): 16

Top Topics

Biomedical Literature

Decision Support

Top Venues

Database J. Biol. Databases Curation

Nucleic Acids Res.

Publications

Emilie Pasche, Anaïs Mottaz, Julien Gobeill, Pierre-André Michel, Déborah Caucheteur, Nona Naderi, Patrick Ruch
Assessing the use of supplementary materials to improve genomic variant discovery. Database J. Biol. Databases Curation 2023 (2023)
Anaïs Mottaz, Emilie Pasche, Pierre-André Michel, Luc Mottin, Douglas Teodoro, Patrick Ruch
Designing an Optimal Expansion Method to Improve the Recall of a Genomic Variant Curation-Support Service. MIE (2022)
Déborah Caucheteur, Emilie Pasche, Luc Mottin, Anaïs Mottaz, Julien Gobeill, Patrick Ruch
SIB Text Mining at TREC Clinical Trials 2021. TREC (2021)
Julien Gobeill, Déborah Caucheteur, Pierre-André Michel, Luc Mottin, Emilie Pasche, Patrick Ruch
SIB Literature Services: RESTful customizable search engines in biomedical literature, enriched with automatically mapped biomedical concepts. Nucleic Acids Res. 48 (Webserver-Issue) (2020)
Déborah Caucheteur, Julien Gobeill, Anaïs Mottaz, Emilie Pasche, Pierre-André Michel, Luc Mottin, Daniel J. Stekhoven, Valérie Barbié, Patrick Ruch
Text-Mining Services of the Swiss Variant Interpretation Platform for Oncology. MIE (2020)
Douglas Teodoro, Julien Knafou, Nona Naderi, Emilie Pasche, Julien Gobeill, Cecilia N. Arighi, Patrick Ruch
UPCLASS: a deep learning-based classifier for UniProtKB entry publications. Database J. Biol. Databases Curation 2020 (2020)
András Hatos, Borbála Hajdu-Soltész, Alexander Miguel Monzon, Nicolas Palopoli, Lucía Álvarez, Burcu Aykaç Fas, Claudio Bassot, Guillermo I. Benítez, Martina Bevilacqua, Anastasia Chasapi, Lucía B. Chemes, Norman E. Davey, Radoslav Davidovic, A. Keith Dunker, Arne Elofsson, Julien Gobeill, Nicolás S. González Foutel, Govindarajan Sudha, Mainak Guharoy, Tamás Horváth, Valentin Iglesias, Andrey V. Kajava, Orsolya P. Kovács, John Lamb, Matteo Lambrughi, Tamas Lazar, Jeremy Y. Leclercq, Emanuela Leonardi, Sandra Macedo-Ribeiro, Mauricio Macossay-Castillo, Emiliano Maiani, José A. Manso, Cristina Marino Buslje, Elizabeth Martínez-Pérez, Bálint Mészáros, Ivan Micetic, Giovanni Minervini, Nikoletta Murvai, Marco Necci, Christos A. Ouzounis, Mátyás Pajkos, Lisanna Paladin, Rita Pancsa, Elena Papaleo, Gustavo D. Parisi, Emilie Pasche, Pedro J. Barbosa Pereira, Vasilis J. Promponas, Jordi Pujols, Federica Quaglia, Patrick Ruch, Marco Salvatore, Éva Schád, Beáta Szabó, Tamás Szaniszló, Stella Tamana, Ágnes Tantos, Nevena Veljkovic, Salvador Ventura, Wim F. Vranken, Zsuzsanna Dosztányi, Peter Tompa, Silvio C. E. Tosatto, Damiano Piovesan
DisProt: intrinsic protein disorder annotation in 2020. Nucleic Acids Res. 48 (Database-Issue) (2020)
Emilie Pasche, Déborah Caucheteur, Luc Mottin, Anaïs Mottaz, Julien Gobeill, Patrick Ruch
SIB Text Mining at TREC Precision Medicine 2020. TREC (2020)
Nona Naderi, Julien Gobeill, Douglas Teodoro, Emilie Pasche, Patrick Ruch
A Baseline Approach for Early Detection of Signs of Anorexia and Self-harm in Reddit Posts. CLEF (Working Notes) (2019)
Déborah Caucheteur, Emilie Pasche, Julien Gobeill, Anaïs Mottaz, Luc Mottin, Patrick Ruch
Designing retrieval models to contrast precision-driven ad hoc search vs. recall-driven treatment extraction in Precision Medicine. TREC (2019)
Julien Gobeill, Emilie Pasche, Patrick Ruch
Retrieving the Evidence of a Free Text Annotation in a Scientific Article: A Data Free Approach. CICLing (1) (2019)
Aurore Britan, Isabelle Cusin, Valérie Hinard, Luc Mottin, Emilie Pasche, Julien Gobeill, Valentine Rech de Laval, Anne Gleizes, Daniel Dinis Teixeira, Pierre-André Michel, Patrick Ruch, Pascale Gaudet
Accelerating annotation of articles via automated approaches: evaluation of the neXtA5 curation-support tool by neXtProt. Database J. Biol. Databases Curation 2018 (2018)
Emilie Pasche, Julien Gobeill, Luc Mottin, Anaïs Mottaz, Douglas Teodoro, Paul Van Rijen, Patrick Ruch
Customizing a Variant Annotation-Support Tool: an Inquiry into Probability Ranking Principles for TREC Precision Medicine. TREC (2017)
Luc Mottin, Emilie Pasche, Julien Gobeill, Valentine Rech de Laval, Anne Gleizes, Pierre-André Michel, Amos Bairoch, Pascale Gaudet, Patrick Ruch
Triage by ranking to support the curation of protein interactions. Database J. Biol. Databases Curation 2017 (2017)
Luc Mottin, Julien Gobeill, Emilie Pasche, Pierre-André Michel, Isabelle Cusin, Pascale Gaudet, Patrick Ruch
: accelerating annotation of articles via automated approaches in neXtProt. Database J. Biol. Databases Curation 2016 (2016)
Luc Mottin, Julien Gobeill, Anaïs Mottaz, Emilie Pasche, Arnaud Gaudinat, Patrick Ruch
BiTeM at CLEF eHealth Evaluation Lab 2016 Task 2: Multilingual Information Extraction. CLEF (Working Notes) (2016)
Julien Gobeill, Arnaud Gaudinat, Emilie Pasche, Dina Vishnyakova, Pascale Gaudet, Amos Bairoch, Patrick Ruch
Deep Question Answering for protein annotation. Database J. Biol. Databases Curation 2015 (2015)
Julien Gobeill, Emilie Pasche, Dina Vishnyakova, Patrick Ruch
Closing the loop: from paper to protein annotation using supervised Gene Ontology classification. Database J. Biol. Databases Curation 2014 (2014)
Julien Gobeill, Arnaud Gaudinat, Emilie Pasche, Patrick Ruch
Full-texts representation with Medical Subject Headings, and co-citations network rerank- ing strategies for TREC 2014 Clinical Decision Support Track. TREC (2014)
Emilie Pasche, Julien Gobeill, Olivier Kreim, Fatma Oezdemir-Zaech, Thérèse Vachon, Christian Lovis, Patrick Ruch
Development and tuning of an original search engine for patent libraries in medicinal chemistry. BMC Bioinform. 15 (S-1) (2014)
Daniel Schober, Rémy Choquet, Kristof Depraetere, Frank Enders, Philipp Daumke, Marie-Christine Jaulent, Douglas Teodoro, Emilie Pasche, Christian Lovis, Martin Boeker
DebugIT: Ontology-mediated Layered Data Integration for Real-time Antibiotics Resistance Surveillance. SWAT4LS (2014)
Dina Vishnyakova, Emilie Pasche, Christian Lovis, Patrick Ruch
Utilization of Ontology Look-Up Services in Information Retrieval for Biomedical Literature. EFMI-STC (2013)
Emilie Pasche, Julien Gobeill, Dina Vishnyakova, Patrick Ruch, Christian Lovis
Use of Controlled Vocabularies to Improve Biomedical Information Retrieval Tasks. MedInfo (2013)
Julien Gobeill, Emilie Pasche, Dina Vishnyakova, Patrick Ruch
Managing the data deluge: data-driven GO category assignment improves while complexity of functional annotation increases. Database J. Biol. Databases Curation 2013 (2013)
Dina Vishnyakova, Emilie Pasche, Douglas Teodoro, Christian Lovis, Patrick Ruch
Pathogens and Gene Product Normalization in the Biomedical Literature. EFMI-STC (2012)
Emilie Pasche, Julien Gobeill, Douglas Teodoro, Arnaud Gaudinat, Dina Vishnyakova, Christian Lovis, Patrick Ruch
An advanced search engine for patent analytics in medicinal chemistry. MIE (2012)
Dina Vishnyakova, Emilie Pasche, Julien Gobeill, Arnaud Gaudinat, Christian Lovis, Patrick Ruch
Classification and Prioritization of Biomedical Literature for the Comparative Toxicogenomics Database. MIE (2012)
Dina Vishnyakova, Emilie Pasche, Patrick Ruch
Using binary classification to prioritize and curate articles for the Comparative Toxicogenomics Database. Database J. Biol. Databases Curation 2012 (2012)
Emilie Pasche, Julien Gobeill, Douglas Teodoro, Arnaud Gaudinat, Dina Vishnyakova, Christian Lovis, Patrick Ruch
A User-Friendly Tool for Medical-Related Patent Retrieval. EFMI-STC (2012)
Douglas Teodoro, Rémy Choquet, Daniel Schober, Giovanni Mels, Emilie Pasche, Patrick Ruch, Christian Lovis
Interoperability Driven Integration of Biomedical Data Sources. MIE (2011)
Julien Gobeill, Arnaud Gaudinat, Patrick Ruch, Emilie Pasche, Douglas Teodoro, Dina Vishnyakova
BiTeM Group Report for TREC Chemical IR Track 2011. TREC (2011)
Emilie Pasche, Julien Gobeill, Douglas Teodoro, Dina Vishnyakova, Arnaud Gaudinat, Patrick Ruch, Christian Lovis
Using Multimodal Mining to Drive Clinical Guidelines Development. MIE (2011)
Julien Gobeill, Arnaud Gaudinat, Patrick Ruch, Emilie Pasche, Douglas Teodoro, Dina Vishnyakova
BiTeM Group Report for TREC Medical Records Track 2011. TREC (2011)
Rémy Choquet, Samiha Qouiyd, David Ouagne, Emilie Pasche, Christel Daniel, Omar Boussaïd, Marie-Christine Jaulent
The Information Quality Triangle: A methodology to assess Clinical Information quality. MedInfo (2010)
Rémy Choquet, Samiha Qouiyd, Emilie Pasche, Christel Daniel, Omar Boussaïd, Marie-Christine Jaulent
Un modèle de connaissances pour mesurer la qualité d'une source d'information. IC (2010)
Douglas Teodoro, Emilie Pasche, Dina Vishnyakova, Julien Gobeill, Patrick Ruch, Christian Lovis
Automatic IPC Encoding and Novelty Tracking for Effective Patent Mining. NTCIR (2010)
Julien Gobeill, Arnaud Gaudinat, Patrick Ruch, Emilie Pasche, Douglas Teodoro, Dina Vishnyakova
BiTeM site Report for TREC Chemistry 2010: Impact of Citations Feeback for Patent Prior Art Search and Chemical Compounds Expansion for Ad Hoc Retrieval. TREC (2010)
Douglas Teodoro, Julien Gobeill, Emilie Pasche, Dina Vishnyakova, Patrick Ruch, Christian Lovis
Automatic Prior Art Searching and Patent Encoding at CLEF-IP '10. CLEF (Notebook Papers/LABs/Workshops) (2010)
Rémy Choquet, Douglas Teodoro, Giovanni Mels, Ariane Assélé Kama, Emilie Pasche, Patrick Ruch, Christian Lovis, Marie-Christine Jaulent
Partage de Données Biomédicales sur le Web Sémantique. WSM@IC (2010)
Douglas Teodoro, Rémy Choquet, Emilie Pasche, Julien Gobeill, Christel Daniel, Patrick Ruch, Christian Lovis
Biomedical Data Management: A Proposal Framework. MIE (2009)
Julien Gobeill, Emilie Pasche, Douglas Teodoro, Patrick Ruch
Simple Pre and Post Processing Strategies for Patent Searching in CLEF Intellectual Property Track 2009. CLEF (1) (2009)
Emilie Pasche, Douglas Teodoro, Julien Gobeill, Patrick Ruch, Christian Lovis
Automatic Medical Knowledge Acquisition Using Question-Answering. MIE (2009)
Julien Gobeill, Douglas Teodoro, Emilie Pasche, Patrick Ruch
Report on the TREC 2009 Experiments: Chemical IR Track. TREC (2009)
Emilie Pasche, Douglas Teodoro, Julien Gobeill, Patrick Ruch, Christian Lovis
QA-driven Guidelines Generation for Bacteriotherapy. AMIA (2009)
Julien Gobeill, Douglas Theodoro, Emilie Pasche, Patrick Ruch
Taking Benefit of Query and Document Expansion using MeSH Descriptors in Medical ImageCLEF 2009. CLEF (Working Notes) (2009)