Christos A. Ouzounis

Publication Activity (10 Years)

Years Active: 1994-2024
Publications (10 Years): 14

Top Topics

Knowledge Integration

Essential Genes

Facial Animation

Computational Biology

Top Venues

Briefings Bioinform.

Publications

Christos A. Ouzounis
The Net of Life, a short story: Intricate patterns of gene flows across hundreds of extant genomes, all the way to LUCA. Biosyst. 239 (2024)
Dimitrios Vasileiou, Christos Karapiperis, Ismini Baltsavia, Anastasia Chasapi, Dag G. Ahrén, Paul J. Janssen, Ioannis Iliopoulos, Vasilis J. Promponas, Anton J. Enright, Christos A. Ouzounis
CGG toolkit: Software components for computational genomics. PLoS Comput. Biol. 19 (11) (2023)
Konstantinos F. Kantelis, Vassilios Asteriou, Aliki Papadimitriou, Anthi Petrou, Christos A. Ouzounis, Lefteris Angelis, Ioannis S. Vizirianakis, Petros Nicopolitidis, Georgios I. Papadimitriou
Bio-Electrical Nanonetworks: A New Paradigm of Biological Nanocommunication based on Living Cable Bacteria Filaments. NANOCOM (2023)
Federica Quaglia, Bálint Mészáros, Edoardo Salladini, András Hatos, Rita Pancsa, Lucía B. Chemes, Mátyás Pajkos, Tamas Lazar, Samuel Peña-Díaz, Jaime Santos, Veronika Ács, Nazanin Farahi, Erzsébet Fichó, Maria Cristina Aspromonte, Claudio Bassot, Anastasia Chasapi, Norman E. Davey, Radoslav Davidovic, Laszlo Dobson, Arne Elofsson, Gábor Erdös, Pascale Gaudet, Michelle G. Giglio, Juliana Glavina, Javier Iserte, Valentín Iglesias, Zsófia L. Kálmán, Matteo Lambrughi, Emanuela Leonardi, Sonia Longhi, Sandra Macedo-Ribeiro, Emiliano Maiani, Julia Marchetti, Cristina Marino Buslje, Attila Meszaros, Alexander Miguel Monzon, Giovanni Minervini, Suvarna Nadendla, Juliet F. Nilsson, Marián Novotný, Christos A. Ouzounis, Nicolas Palopoli, Elena Papaleo, Pedro J. Barbosa Pereira, Gabriele Pozzati, Vasilis J. Promponas, Jordi Pujols, Alma Carolina Sanchez Rocha, Martin Salas, Luciana Rodriguez Sawicki, Éva Schád, Aditi Shenoy, Tamás Szaniszló, Konstantinos D. Tsirigos, Nevena Veljkovic, Gustavo D. Parisi, Salvador Ventura, Zsuzsanna Dosztányi, Peter Tompa, Silvio C. E. Tosatto, Damiano Piovesan
DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation. Nucleic Acids Res. 50 (D1) (2022)
Christos Karapiperis, Anastasia Chasapi, Lefteris Angelis, Zacharias G. Scouras, Pier G. Mastroberardino, Soile Tapio, Michael Atkinson, Christos A. Ouzounis
The Coming of Age for Big Data in Systems Radiobiology, an Engineering Perspective. Big Data 9 (1) (2021)
Anastasia Chasapi, Vasilis J. Promponas, Christos A. Ouzounis
The bioinformatics wealth of nations. Bioinform. 36 (9) (2020)
Pablo Mier, Lisanna Paladin, Stella Tamana, Sophia Petrosian, Borbála Hajdu-Soltész, Annika Urbanek, Aleksandra Gruca, Dariusz Plewczynski, Marcin Grynberg, Pau Bernadó, Zoltán Gáspári, Christos A. Ouzounis, Vasilis J. Promponas, Andrey V. Kajava, John M. Hancock, Silvio C. E. Tosatto, Zsuzsanna Dosztányi, Miguel A. Andrade-Navarro
Disentangling the complexity of low complexity proteins. Briefings Bioinform. 21 (2) (2020)
András Hatos, Borbála Hajdu-Soltész, Alexander Miguel Monzon, Nicolas Palopoli, Lucía Álvarez, Burcu Aykaç Fas, Claudio Bassot, Guillermo I. Benítez, Martina Bevilacqua, Anastasia Chasapi, Lucía B. Chemes, Norman E. Davey, Radoslav Davidovic, A. Keith Dunker, Arne Elofsson, Julien Gobeill, Nicolás S. González Foutel, Govindarajan Sudha, Mainak Guharoy, Tamás Horváth, Valentin Iglesias, Andrey V. Kajava, Orsolya P. Kovács, John Lamb, Matteo Lambrughi, Tamas Lazar, Jeremy Y. Leclercq, Emanuela Leonardi, Sandra Macedo-Ribeiro, Mauricio Macossay-Castillo, Emiliano Maiani, José A. Manso, Cristina Marino Buslje, Elizabeth Martínez-Pérez, Bálint Mészáros, Ivan Micetic, Giovanni Minervini, Nikoletta Murvai, Marco Necci, Christos A. Ouzounis, Mátyás Pajkos, Lisanna Paladin, Rita Pancsa, Elena Papaleo, Gustavo D. Parisi, Emilie Pasche, Pedro J. Barbosa Pereira, Vasilis J. Promponas, Jordi Pujols, Federica Quaglia, Patrick Ruch, Marco Salvatore, Éva Schád, Beáta Szabó, Tamás Szaniszló, Stella Tamana, Ágnes Tantos, Nevena Veljkovic, Salvador Ventura, Wim F. Vranken, Zsuzsanna Dosztányi, Peter Tompa, Silvio C. E. Tosatto, Damiano Piovesan
DisProt: intrinsic protein disorder annotation in 2020. Nucleic Acids Res. 48 (Database-Issue) (2020)
Anastasia Chasapi, Michalis Aivaliotis, Lefteris Angelis, Anastasios Chanalaris, Ioannis Iliopoulos, Ilias Kappas, Christos Karapiperis, Nikos Kyrpides, Evangelos Pafilis, Eleftherios Panteris, Pantelis Topalis, George Tsiamis, Ioannis S. Vizirianakis, Metaxia Vlassi, Vasilis J. Promponas, Christos A. Ouzounis
Establishment of computational biology in Greece and Cyprus: Past, present, and future. PLoS Comput. Biol. 15 (12) (2019)
Fotis E. Psomopoulos, Dimitrios M. Vitsios, Shakuntala Baichoo, Christos A. Ouzounis
BioPAXViz: a cytoscape application for the visual exploration of metabolic pathway evolution. Bioinform. 33 (9) (2017)
Christos A. Ouzounis, Alex Kilias, Christos Mousas
Kernel Projection of Latent Structures Regression for Facial Animation Retargeting. VRIPHYS (2017)
Christos A. Ouzounis, Alex Kilias, Christos Mousas
Kernel Projection of Latent Structures Regression for Facial Animation Retargeting. CoRR (2017)
Shakuntala Baichoo, Christos A. Ouzounis
Computational complexity of algorithms for sequence comparison, short-read assembly and genome alignment. Biosyst. 156 (2017)
Christos Karapiperis, Stefan J. Kempf, Roel Quintens, Omid Azimzadeh, Victoria Linares Vidal, Simonetta Pazzaglia, Dimitry Bazyka, Pier G. Mastroberardino, Zacharias G. Scouras, Soile Tapio, Mohammed Abderrafi Benotmane, Christos A. Ouzounis
Brain Radiation Information Data Exchange (BRIDE): integration of experimental data from low-dose ionising radiation research for pathway discovery. BMC Bioinform. 17 (2016)
Christos A. Ouzounis, Christos Mousas, Christos-Nikolaos Anagnostopoulos, Paul Newbury
Using Personalized Finger Gestures for Navigating Virtual Characters. VRIPHYS (2015)
Dimitrios M. Vitsios, Fotis E. Psomopoulos, Pericles A. Mitkas, Christos A. Ouzounis
Inference of Pathway Decomposition Across Multiple Species Through Gene Clustering. Int. J. Artif. Intell. Tools 24 (1) (2015)
Nikolas Papanikolaou, Georgios A. Pavlopoulos, Evangelos Pafilis, Theodosios Theodosiou, Reinhard Schneider, Venkata P. Satagopam, Christos A. Ouzounis, Aristides G. Eliopoulos, Vasilis J. Promponas, Ioannis Iliopoulos
BioTextQuest+: a knowledge integration platform for literature mining and concept discovery. Bioinform. 31 (6) (2015)
Nikolas Papanikolaou, Georgios A. Pavlopoulos, Evangelos Pafilis, Theodosios Theodosiou, Reinhard Schneider, Venkata P. Satagopam, Christos A. Ouzounis, Aristides G. Eliopoulos, Vasilis J. Promponas, Ioannis Iliopoulos
: a knowledge integration platform for literature mining and concept discovery. Bioinform. 30 (22) (2014)
Vasilis J. Promponas, Christos A. Ouzounis, Ioannis Iliopoulos
Experimental evidence validating the computational inference of functional associations from gene fusion events: a critical survey. Briefings Bioinform. 15 (3) (2014)
Metin Akay, Yuan-Ting Zhang, Konstantina S. Nikita, Miguel A. Andrade, Christos A. Ouzounis
Keynote lectures. BIBE (2012)
Christos A. Ouzounis
Rise and Demise of Bioinformatics? Promise and Progress. PLoS Comput. Biol. 8 (4) (2012)
Dimitrios M. Vitsios, Fotis E. Psomopoulos, Pericles A. Mitkas, Christos A. Ouzounis
Multi-genome Core Pathway Identification through Gene Clustering. AIAI (2) (2012)
Nikolas Papanikolaou, Evangelos Pafilis, Stavros Nikolaou, Christos A. Ouzounis, Ioannis Iliopoulos, Vasilis J. Promponas
BioTextQuest: a web-based biomedical text mining suite for concept discovery. Bioinform. 27 (23) (2011)
Chrysa Pantzartzi, Elena Drosopoulou, Minas Yiangou, Ignat Drozdov, Sophia Tsoka, Christos A. Ouzounis, Zacharias G. Scouras
, a Sessile Marine Invertebrate Species. PLoS Comput. Biol. 6 (7) (2010)
Najl V. Valeyev, Christian Hundhausen, Yoshinori Umezawa, Nikolai V. Kotov, Gareth Williams, Alex Clop, Crysanthi Ainali, Christos A. Ouzounis, Sophia Tsoka, Frank O. Nestle
A Systems Model for Immune Cell Interactions Unravels the Mechanism of Inflammation in Human Skin. PLoS Comput. Biol. 6 (12) (2010)
Shiri Freilich, Leon Goldovsky, Assaf Gottlieb, Eric Blanc, Sophia Tsoka, Christos A. Ouzounis
Stratification of co-evolving genomic groups using ranked phylogenetic profiles. BMC Bioinform. 10 (2009)
Theodosios Theodosiou, Nikos Darzentas, Lefteris Angelis, Christos A. Ouzounis
PuReD-MCL: a graph-based PubMed document clustering methodology. Bioinform. 24 (17) (2008)
Benjamin Audit, Emmanuel D. Levy, Walter R. Gilks, Leon Goldovsky, Christos A. Ouzounis
CORRIE: enzyme sequence annotation with confidence estimates. BMC Bioinform. 8 (S-4) (2007)
Núria López-Bigas, Benjamin J. Blencowe, Christos A. Ouzounis
Highly consistent patterns for inherited human diseases at the molecular level. Bioinform. 22 (3) (2006)
Victor Kunin, Sarah A. Teichmann, Martijn A. Huynen, Christos A. Ouzounis
The properties of protein family space depend on experimental design. Bioinform. 21 (11) (2005)
Victor Kunin, Christos A. Ouzounis
Clustering the annotation space of proteins. BMC Bioinform. 6 (2005)
Mike Smith, Victor Kunin, Leon Goldovsky, Anton J. Enright, Christos A. Ouzounis
MagicMatch - cross-referencing sequence identifiers across databases. Bioinform. 21 (16) (2005)
Emmanuel D. Levy, Christos A. Ouzounis, Walter R. Gilks, Benjamin Audit
Probabilistic annotation of protein sequences based on functional classifications. BMC Bioinform. 6 (2005)
Leon Goldovsky, Paul Janssen, Dag G. Ahrén, Benjamin Audit, Ildefonso Cases, Nikos Darzentas, Anton J. Enright, Núria López-Bigas, José M. Peregrín-Alvarez, Mike Smith, Sophia Tsoka, Victor Kunin, Christos A. Ouzounis
CoGenT++: an extensive and extensible data environment for computational genomics. Bioinform. 21 (19) (2005)
Núria López-Bigas, Christos A. Ouzounis
Properties of Genes involved in Human Genetic Disease. Spanish Bioinformatics Conference (2004)
Dag G. Ahrén, Christos A. Ouzounis
Robustness of Metabolic Map Reconstruction. J. Bioinform. Comput. Biol. 2 (3) (2004)
David P. Kreil, Christos A. Ouzounis
Comparison of sequence masking algorithms and the detection of biased protein sequence regions. Bioinform. 19 (13) (2003)
Christos A. Ouzounis, Alfonso Valencia
Early bioinformatics: the birth of a discipline - a personal view. Bioinform. 19 (17) (2003)
Christian Weinel, Maria D. Ermolaeva, Christos A. Ouzounis
PseuRECA: genome annotation and gene context analysis for Pseudomonas aeruginosa PAO1. Bioinform. 19 (12) (2003)
Paul Janssen, Anton J. Enright, Benjamin Audit, Ildefonso Cases, Leon Goldovsky, Nicola Harte, Victor Kunin, Christos A. Ouzounis
COmplete GENome Tracking (COGENT): A Flexible Data Environment for Computational Genomics. Bioinform. 19 (11) (2003)
Victor Kunin, Christos A. Ouzounis
GeneTRACE - Reconstruction of Gene Content of Ancestral Species. Bioinform. 19 (11) (2003)
Ioannis Iliopoulos, Sophia Tsoka, Miguel A. Andrade, Anton J. Enright, Mark Carroll, Patrick Poullet, Vasilis J. Promponas, Theodore Liakopoulos, Giorgos Palaios, Claude Pasquier, Stavros J. Hamodrakas, Javier Tamames, Asutosh T. Yagnik, Anna Tramontano, Damien Devos, Christian Blaschke, Alfonso Valencia, David Brett, David M. A. Martin, Christophe Leroy, Isidore Rigoutsos, Chris Sander, Christos A. Ouzounis
Evaluation of annotation strategies using an entire genome sequence. Bioinform. 19 (6) (2003)
Walter R. Gilks, Benjamin Audit, Daniela De Angelis, Sophia Tsoka, Christos A. Ouzounis
Modeling the percolation of annotation errors in a database of protein sequences. Bioinform. 18 (12) (2002)
Christos A. Ouzounis
Bioinformatics and the theoretical foundations of molecular biology. Bioinform. 18 (3) (2002)
Richard M. R. Coulson, Anton J. Enright, Christos A. Ouzounis
Transcription-associated protein families are primarily taxon-specific. Bioinform. 17 (1) (2001)
Ioannis Iliopoulos, Anton J. Enright, Christos A. Ouzounis
TEXTQUEST: Document Clustering of MEDLINE Abstracts For Concept Discovery In Molecular Biology. Pacific Symposium on Biocomputing (2001)
Anton J. Enright, Christos A. Ouzounis
BioLayout-an automatic graph layout algorithm for similarity visualization. Bioinform. 17 (9) (2001)
Christos A. Ouzounis
A Million Annotations for the Molecular Biologist. German Conference on Bioinformatics (2000)
Christos A. Ouzounis
Two or three myths about bioinformatics. Bioinform. 16 (3) (2000)
Anton J. Enright, Christos A. Ouzounis
GeneRAGE: a robust algorithm for sequence clustering and domain detection. Bioinform. 16 (5) (2000)
Vasilis J. Promponas, Anton J. Enright, Sophia Tsoka, David P. Kreil, Christophe Leroy, Stavros J. Hamodrakas, Chris Sander, Christos A. Ouzounis
CAST: an iterative algorithm for the complexity analysis of sequence tracts. Bioinform. 16 (10) (2000)
Christian Blaschke, Miguel A. Andrade, Christos A. Ouzounis, Alfonso Valencia
Automatic Extraction of Biological Information from Scientific Text: Protein-Protein Interactions. ISMB (1999)
Miguel A. Andrade, N. P. Brown, Christophe Leroy, S. Hörsch, Antoine de Daruvar, C. Reich, Angelo Franchini, Javier Tamames, Alfonso Valencia, Christos A. Ouzounis, Chris Sander
Automated genome sequence analysis and annotation. Bioinform. 15 (5) (1999)
Javier Tamames, Christos A. Ouzounis, Georg Casari, Chris Sander, Alfonso Valencia
EUCLID: automatic classification of proteins in functional classes by their database annotations. Bioinform. 14 (6) (1998)
Miguel A. Andrade, Georg Casari, Antoine de Daruvar, Chris Sander, Reinhard Schneider, Javier Tamames, Alfonso Valencia, Christos A. Ouzounis
Sequence analysis of the Methanococcus jannaschii genome and the prediction of protein function. Comput. Appl. Biosci. 13 (4) (1997)
Marie desJardins, Peter D. Karp, Markus Krummenacker, Thomas J. Lee, Christos A. Ouzounis
Prediction of Enzyme Classification from Protein Sequence without the Use of Sequence Similarity. ISMB (1997)
Peter D. Karp, Christos A. Ouzounis, Suzanne M. Paley
HinCyc: A Knowledge Base of the Complete Genome and Metabolic Pathways of H. influenzae. ISMB (1996)
Christos A. Ouzounis, Alfonso Valencia, Javier Tamames, Peer Bork, Chris Sander
The Functional Composition of Living Machines as a Design Principle for Artificial Organisms. ECAL (1995)
Michael Scharf, Reinhard Schneider, Georg Casari, Peer Bork, Alfonso Valencia, Christos A. Ouzounis, Chris Sander
GeneQuiz: A Workbench for Sequence Analysis. ISMB (1994)