Reinhard Schneider

ORCID

Publication Activity (10 Years)

Years Active: 1992-2024
Publications (10 Years): 27

Top Venues

University of Heidelberg, Germany (PHD)

Education History

University of Heidelberg, Germany

PHD

Publications

Carlos Vega, Marek Ostaszewski, Valentin Grouès, Reinhard Schneider, Venkata P. Satagopam
BioKC: a collaborative platform for curation and annotation of molecular interactions. Database J. Biol. Databases Curation 2024 (2024)
Ahmed Abdelmonem Hemedan, Reinhard Schneider, Marek Ostaszewski
Applications of Boolean modeling to study the dynamics of a complex disease and therapeutics responses. Frontiers Bioinform. 3 (2023)
Wei Gu, Christophe Trefois, Pinar Alper, Danielle Welter, Yohan Jarosz, Jacek Lebioda, Linda Ebermann, Regina Becker, Venkata P. Satagopam, Reinhard Schneider, Bert Verdonck
RDM Services at the Luxembourg National Data Service. CoRDI (2023)
Piotr Gawron, David Hoksza, Janet Piñero, María Peña-Chilet, Marina Esteban-Medina, Jose Luis Fernandez-Rueda, Vincenza Colonna, Ewa Smula, Laurent Heirendt, François Ancien, Valentin Grouès, Venkata P. Satagopam, Reinhard Schneider, Joaquín Dopazo, Laura I. Furlong, Marek Ostaszewski
Visualization of automatically combined disease maps and pathway diagrams for rare diseases. Frontiers Bioinform. 3 (2023)
Alexander Mazein, Marcio Luis Acencio, Irina Balaur, Adrien Rougny, Danielle Welter, Anna Niarakis, Diana Ramirez Ardila, Ugur Dogrusoz, Piotr Gawron, Venkata P. Satagopam, Wei Gu, Andreas Kremer, Reinhard Schneider, Marek Ostaszewski
A guide for developing comprehensive systems biology maps of disease mechanisms: planning, construction and maintenance. Frontiers Bioinform. 3 (2023)
Carlos Vega, Reinhard Schneider, Venkata P. Satagopam
Analysis: Flawed Datasets of Monkeypox Skin Images. J. Medical Syst. 47 (1) (2023)
Miroslav Kratochvíl, Laurent Heirendt, St Elmo Wilken, Taneli Pusa, Sylvain Arreckx, Alberto Noronha, Marvin van Aalst, Venkata P. Satagopam, Oliver Ebenhöh, Reinhard Schneider, Christophe Trefois, Wei Gu
COBREXA.jl: constraint-based reconstruction and exascale analysis. Bioinform. 38 (4) (2022)
Carlos Vega, Miroslav Kratochvíl, Venkata P. Satagopam, Reinhard Schneider
Translational Challenges of Biomedical Machine Learning Solutions in Clinical and Laboratory Settings. IWBBIO (2) (2022)
Alexander Mazein, Adrien Rougny, Jonathan R. Karr, Julio Saez-Rodriguez, Marek Ostaszewski, Reinhard Schneider
Reusability and composability in process description maps: RAS-RAF-MEK-ERK signalling. Briefings Bioinform. 22 (5) (2021)
Michael Bernhofer, Christian Dallago, Timothy Karl, Venkata P. Satagopam, Michael Heinzinger, Maria Littmann, Tobias Olenyi, Jiajun Qiu, Konstantin Schütze, Guy Yachdav, Haim Ashkenazy, Nir Ben-Tal, Yana Bromberg, Tatyana Goldberg, László Kaján, Seán I. O'Donoghue, Chris Sander, Andrea Schafferhans, Avner Schlessinger, Gerrit Vriend, Milot Mirdita, Piotr Gawron, Wei Gu, Yohan Jarosz, Christophe Trefois, Martin Steinegger, Reinhard Schneider, Burkhard Rost
PredictProtein - Predicting Protein Structure and Function for 29 Years. Nucleic Acids Res. 49 (Webserver-Issue) (2021)
Evangelos Karatzas, Fotis A. Baltoumas, Nikolaos A. Panayiotou, Reinhard Schneider, Georgios A. Pavlopoulos
Arena3Dweb: interactive 3D visualization of multilayered networks. Nucleic Acids Res. 49 (Webserver-Issue) (2021)
David Hoksza, Piotr Gawron, Marek Ostaszewski, Jan Hasenauer, Reinhard Schneider
Closing the gap between formats for storing layout information in systems biology. Briefings Bioinform. 22 (1) (2021)
David Hoksza, Piotr Gawron, Marek Ostaszewski, Jan Hasenauer, Reinhard Schneider
Closing the gap between formats for storing layout information in systems biology. Briefings Bioinform. 21 (4) (2020)
Bruna Piereck, Marx Oliveira-Lima, Ana Maria Benko-Iseppon, Sarah Diehl, Reinhard Schneider, Ana Christina Brasileiro-Vidal, Adriano Barbosa-Silva
LAITOR4HPC: A text mining pipeline based on HPC for building interaction networks. BMC Bioinform. 21 (1) (2020)
Wei Gu, Reha Yildirimman, Emmanuel Van der Stuyft, Denny Verbeeck, Sascha Herzinger, Venkata P. Satagopam, Adriano Barbosa-Silva, Reinhard Schneider, Bodo M. H. Lange, Hans Lehrach, Yike Guo, David Henderson, Anthony Rowe
Data and knowledge management in translational research: implementation of the eTRIKS platform for the IMI OncoTrack consortium. BMC Bioinform. 20 (1) (2019)
Marek Ostaszewski, Stephan Gebel, Inna Kuperstein, Alexander Mazein, Andrei Yu. Zinovyev, Ugur Dogrusoz, Jan Hasenauer, Ronan M. T. Fleming, Nicolas Le Novère, Piotr Gawron, Thomas S. Ligon, Anna Niarakis, David P. Nickerson, Daniel Weindl, Rudi Balling, Emmanuel Barillot, Charles Auffray, Reinhard Schneider
Community-driven roadmap for integrated disease maps. Briefings Bioinform. 20 (2) (2019)
Alberto Noronha, Jennifer Modamio, Yohan Jarosz, Elisabeth Guerard, Nicolas Sompairac, German A. Preciat Gonzalez, Anna Dröfn Daníelsdóttir, Max Krecke, Diane Merten, Hulda S. Haraldsdóttir, Almut Heinken, Laurent Heirendt, Stefanía Magnúsdóttir, Dmitry A. Ravcheev, Swagatika Sahoo, Piotr Gawron, Lucia Friscioni, Beatriz Garcia, Mabel Prendergast, Alberto Puente, Mariana Rodrigues, Akansha Roy, Mouss Rouquaya, Luca Wiltgen, Alise Zagare, Elisabeth John, Maren Krueger, Inna Kuperstein, Andrei Yu. Zinovyev, Reinhard Schneider, Ronan M. T. Fleming, Ines Thiele
The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease. Nucleic Acids Res. 47 (Database-Issue) (2019)
David Hoksza, Piotr Gawron, Marek Ostaszewski, Ewa Smula, Reinhard Schneider
MINERVA API and plugins: opening molecular network analysis and visualization to the community. Bioinform. 35 (21) (2019)
David Hoksza, Piotr Gawron, Marek Ostaszewski, Reinhard Schneider
MolArt: a molecular structure annotation and visualization tool. Bioinform. 34 (23) (2018)
Marek Ostaszewski, Emmanuel Kieffer, Grégoire Danoy, Reinhard Schneider, Pascal Bouvry
Clustering approaches for visual knowledge exploration in molecular interaction networks. BMC Bioinform. 19 (1) (2018)
Sascha Herzinger, Wei Gu, Venkata P. Satagopam, Serge Eifes, Kavita Rege, Adriano Barbosa-Silva, Reinhard Schneider
SmartR: an open-source platform for interactive visual analytics for translational research data. Bioinform. 33 (14) (2017)
Laurent Heirendt, Sylvain Arreckx, Christophe Trefois, Yohan Yarosz, Maharshi Vyas, Venkata P. Satagopam, Reinhard Schneider, Ines Thiele, Ronan M. T. Fleming
ARTENOLIS: Automated Reproducibility and Testing Environment for Licensed Software. CoRR (2017)
Alberto Noronha, Anna Dröfn Daníelsdóttir, Piotr Gawron, Freyr Jóhannsson, Soffía Jónsdóttir, Sindri Jarlsson, Jón Pétur Gunnarsson, Sigurður Brynjólfsson, Reinhard Schneider, Ines Thiele, Ronan M. T. Fleming
ReconMap: an interactive visualization of human metabolism. Bioinform. 33 (4) (2017)
Venkata P. Satagopam, Wei Gu, Serge Eifes, Piotr Gawron, Marek Ostaszewski, Stephan Gebel, Adriano Barbosa-Silva, Rudi Balling, Reinhard Schneider
Integration and Visualization of Translational Medicine Data for Better Understanding of Human Diseases. Big Data 4 (2) (2016)
Enrico Glaab, Reinhard Schneider
RepExplore: addressing technical replicate variance in proteomics and metabolomics data analysis. Bioinform. 31 (13) (2015)
Sune S. Nielsen, Grégoire Danoy, Wiktor Jurkowski, Juan Luis Jiménez Laredo, Reinhard Schneider, El-Ghazali Talbi, Pascal Bouvry
A Novel Multi-objectivisation Approach for Optimising the Protein Inverse Folding Problem. EvoApplications (2015)
Nikolas Papanikolaou, Georgios A. Pavlopoulos, Evangelos Pafilis, Theodosios Theodosiou, Reinhard Schneider, Venkata P. Satagopam, Christos A. Ouzounis, Aristides G. Eliopoulos, Vasilis J. Promponas, Ioannis Iliopoulos
BioTextQuest+: a knowledge integration platform for literature mining and concept discovery. Bioinform. 31 (6) (2015)
Nikolas Papanikolaou, Georgios A. Pavlopoulos, Evangelos Pafilis, Theodosios Theodosiou, Reinhard Schneider, Venkata P. Satagopam, Christos A. Ouzounis, Aristides G. Eliopoulos, Vasilis J. Promponas, Ioannis Iliopoulos
: a knowledge integration platform for literature mining and concept discovery. Bioinform. 30 (22) (2014)
Norman E. Davey, Venkata P. Satagopam, Salvador Santiago-Mozos, Carlos Villacorta-Martin, Tanmay A. M. Bharat, Reinhard Schneider, John A. G. Briggs
The HIV Mutation Browser: A Resource for Human Immunodeficiency Virus Mutagenesis and Polymorphism Data. PLoS Comput. Biol. 10 (12) (2014)
Maria Secrier, Reinhard Schneider
Visualizing time-related data in biology, a review. Briefings Bioinform. 15 (5) (2014)
Guy Yachdav, Edda Kloppmann, László Kaján, Maximilian Hecht, Tatyana Goldberg, Tobias Hamp, Peter Hönigschmid, Andrea Schafferhans, Manfred Roos, Michael Bernhofer, Lothar Richter, Haim Ashkenazy, Marco Punta, Avner Schlessinger, Yana Bromberg, Reinhard Schneider, Gerrit Vriend, Chris Sander, Nir Ben-Tal, Burkhard Rost
PredictProtein - an open resource for online prediction of protein structural and functional features. Nucleic Acids Res. 42 (Webserver-Issue) (2014)
Janos X. Binder, Sune Pletscher-Frankild, Kalliopi Tsafou, Christian Stolte, Seán I. O'Donoghue, Reinhard Schneider, Lars Juhl Jensen
COMPARTMENTS: unification and visualization of protein subcellular localization evidence. Database J. Biol. Databases Curation 2014 (2014)
Evangelos Pafilis, Georgios A. Pavlopoulos, Venkata P. Satagopam, Nikolas Papanikolaou, Heiko Horn, Christos Arvanitidis, Lars Juhl Jensen, Reinhard Schneider, Ioannis Iliopoulos
OnTheFly 2.0: A tool for automatic annotation of files and biological information extraction. BIBE (2013)
Georgios A. Pavlopoulos, Anastasis Oulas, Ernesto Iacucci, Alejandro Sifrim, Yves Moreau, Reinhard Schneider, Jan Aerts, Ioannis Iliopoulos
Unraveling genomic variation from next generation sequencing data. BioData Min. 6 (2013)
Rafael C. Jimenez, Juan P. Albar, Jong Bhak, Marie-Claude Blatter, Thomas Blicher, Michelle D. Brazas, Catherine Brooksbank, Aidan Budd, Javier De Las Rivas, Jacqueline Dreyer, Marc A. van Driel, Michael J. Dunn, Pedro L. Fernandes, Celia W. G. van Gelder, Henning Hermjakob, Vassilios Ioannidis, David Phillip Judge, Pascal Kahlem, Eija Korpelainen, Hans-Joachim Kraus, Jane E. Loveland, Christine Mayer, Jennifer McDowall, Federico Morán, Nicola J. Mulder, Tommi H. Nyrönen, Kristian Rother, Gustavo A. Salazar, Reinhard Schneider, Allegra Via, Jose M. Villaveces, Ping Yu, Maria Victoria Schneider, Teresa K. Attwood, Manuel Corpas
iAnn: an event sharing platform for the life sciences. Bioinform. 29 (15) (2013)
Ernesto Iacucci, Léon-Charles Tranchevent, Dusan Popovic, Georgios A. Pavlopoulos, Bart De Moor, Reinhard Schneider, Yves Moreau
A bioinformatics e-dating story: computational prediction and prioritization of receptor-ligand pairs. BMC Bioinform. 13 (S-18) (2012)
Laurent Lefèvre, Vicente Martin, Miguel A. Ordonez, Johnatan E. Pecero, Jean-Marc Pierson, Jesús Carretero, Pascal Bouvry, David R. C. Hill, Jesús Labarta, Reinhard Schneider, James C. Sexton, Mads Nygård, Gorka Esnal Lopez, Maria Mirto, Marco Passante, Giovanni Aloisio, Carsten Trinitis, Alexander Heinecke, Lamia Djoudi
HPCS 2012 panels: Panel I: Energy efficient systems in next generation high performance data and compute centers. HPCS (2012)
Enrico Glaab, Reinhard Schneider
PathVar: analysis of gene and protein expression variance in cellular pathways using microarray data. Bioinform. 28 (3) (2012)
Theodoros G. Soldatos, Seán I. O'Donoghue, Venkata P. Satagopam, Adriano Barbosa-Silva, Georgios A. Pavlopoulos, Ana Carolina Wanderley-Nogueira, Nina da Mota Soares-Cavalcanti, Reinhard Schneider
Caipirini: using gene sets to rank literature. BioData Min. 5 (2012)
Enrico Glaab, Anaïs Baudot, Natalio Krasnogor, Reinhard Schneider, Alfonso Valencia
EnrichNet: network-based gene set enrichment analysis. Bioinform. 28 (18) (2012)
Maria Secrier, Georgios A. Pavlopoulos, Jan Aerts, Reinhard Schneider
Arena3D: visualizing time-driven phenotypic differences in biological systems. BMC Bioinform. 13 (2012)
Burkhard Rost, Terry Gaasterland, Thomas Lengauer, Michal Linial, Scott Markel, B. J. Morrison McKay, Reinhard Schneider, Paul Horton, Janet Kelso
Paving the future: finding suitable ISMB venues. Bioinform. 28 (19) (2012)
Manuel Corpas, Segun A. Fatumo, Reinhard Schneider
How Not to Be a Bioinformatician. Source Code Biol. Medicine 7 (2012)
Ernesto Iacucci, Léon-Charles Tranchevent, Dusan Popovic, Georgios A. Pavlopoulos, Bart De Moor, Reinhard Schneider, Yves Moreau
ReLiance: a machine learning and literature-based prioritization of receptor - ligand pairings. Bioinform. 28 (18) (2012)
Francisco Azuaje, Michaël Heymann, Anne-Marie Ternes, Anke Wienecke-Baldacchino, Daniel Struck, Danièle Moes, Reinhard Schneider
Benelux bioinformatics conference. J. Clin. Bioinform. 2 (2012)
Robbie P. Joosten, Tim A. H. te Beek, Elmar Krieger, Maarten L. Hekkelman, Rob W. W. Hooft, Reinhard Schneider, Chris Sander, Gert Vriend
A series of PDB related databases for everyday needs. Nucleic Acids Res. 39 (Database-Issue) (2011)
Georgios A. Pavlopoulos, Maria Secrier, Charalampos N. Moschopoulos, Theodoros G. Soldatos, Sophia Kossida, Jan Aerts, Reinhard Schneider, Pantelis G. Bagos
Using graph theory to analyze biological networks. BioData Min. 4 (2011)
Allyson L. Lister, Ruchira S. Datta, Oliver Hofmann, Roland Krause, Michael Kuhn, Bettina Roth, Reinhard Schneider
Live Coverage of Scientific Conferences Using Web Technologies. PLoS Comput. Biol. 6 (1) (2010)
Seán I. O'Donoghue, Heiko Horn, Evangelos Pafilis, Sven Haag, Michael Kuhn, Venkata P. Satagopam, Reinhard Schneider, Lars Juhl Jensen
Reflect: A practical approach to web semantics. J. Web Semant. 8 (2-3) (2010)
Venkata P. Satagopam, Margarita C. Theodoropoulou, Christos K. Stampolakis, Georgios A. Pavlopoulos, Nikolaos Papandreou, Pantelis G. Bagos, Reinhard Schneider, Stavros J. Hamodrakas
GPCRs, G-proteins, effectors and their interactions: human-gpDB, a database employing visualization tools and data integration techniques. Database J. Biol. Databases Curation 2010 (2010)
Adriano Barbosa-Silva, Theodoros G. Soldatos, Ivan L. F. Magalhães, Georgios A. Pavlopoulos, Jean-Fred Fontaine, Miguel A. Andrade-Navarro, Reinhard Schneider, José Miguel Ortega
LAITOR - Literature Assistant for Identification of Terms co-Occurrences and Relationships. BMC Bioinform. 11 (2010)
Georgios A. Pavlopoulos, Theodoros G. Soldatos, Adriano Barbosa-Silva, Reinhard Schneider
A reference guide for tree analysis and visualization. BioData Min. 3 (2010)
Allyson L. Lister, Ruchira S. Datta, Oliver Hofmann, Roland Krause, Michael Kuhn, Bettina Roth, Reinhard Schneider
Live Coverage of Intelligent Systems for Molecular Biology/European Conference on Computational Biology (ISMB/ECCB) 2009. PLoS Comput. Biol. 6 (1) (2010)
Georgios A. Pavlopoulos, Charalampos N. Moschopoulos, Sean D. Hooper, Reinhard Schneider, Sophia Kossida
jClust: a clustering and visualization toolbox. Bioinform. 25 (15) (2009)
Charalampos N. Moschopoulos, Georgios A. Pavlopoulos, Reinhard Schneider, Spiridon D. Likothanassis, Sophia Kossida
GIBA: a clustering tool for detecting protein complexes. BMC Bioinform. 10 (S-6) (2009)
Georgios A. Pavlopoulos, Evangelos Pafilis, Michael Kuhn, Sean D. Hooper, Reinhard Schneider
OnTheFly: a tool for automated document-based text annotation, data linking and network generation. Bioinform. 25 (7) (2009)
Georgios A. Pavlopoulos, Seán I. O'Donoghue, Venkata P. Satagopam, Theodoros G. Soldatos, Evangelos Pafilis, Reinhard Schneider
Arena3D: visualization of biological networks in 3D. BMC Syst. Biol. 2 (2008)
Adriano Barbosa-Silva, Venkata P. Satagopam, Reinhard Schneider, José Miguel Ortega
Clustering of cognate proteins among distinct proteomes derived from multiple links to a single seed sequence. BMC Bioinform. 9 (2008)
Stefan Günther, Michael Kuhn, Mathias Dunkel, Monica Campillos, Christian Senger, Evangelia Petsalaki, Jessica Ahmed, Eduardo Garcia Urdiales, Andreas Gewiess, Lars Juhl Jensen, Reinhard Schneider, Roman Skoblo, Robert B. Russell, Philip E. Bourne, Peer Bork, Robert Preissner
SuperTarget and Matador: resources for exploring drug-target relationships. Nucleic Acids Res. 36 (Database-Issue) (2008)
Georgios A. Pavlopoulos, Anna-Lynn Wegener, Reinhard Schneider
A survey of visualization tools for biological network analysis. BioData Min. 1 (2008)
Chris Dodge, Reinhard Schneider, Chris Sander
The HSSP database of protein structure-sequence alignments and family profiles. Nucleic Acids Res. 26 (1) (1998)
Miguel A. Andrade, Georg Casari, Antoine de Daruvar, Chris Sander, Reinhard Schneider, Javier Tamames, Alfonso Valencia, Christos A. Ouzounis
Sequence analysis of the Methanococcus jannaschii genome and the prediction of protein function. Comput. Appl. Biosci. 13 (4) (1997)
Reinhard Schneider, Antoine de Daruvar, Chris Sander
The HSSP database of protein structure-sequence alignments. Nucleic Acids Res. 25 (1) (1997)
Reinhard Schneider, Chris Sander
The HSSP database of protein structure-sequence alignments. Nucleic Acids Res. 24 (1) (1996)
Burkhard Rost, Chris Sander, Reinhard Schneider
Evolution and Neural Networks - Protein Secondary Structure Prediction Above 71% Accuracy. HICSS (5) (1994)
Burkhard Rost, Chris Sander, Reinhard Schneider
PHD - an automatic mail server for protein secondary structure prediction. Comput. Appl. Biosci. 10 (1) (1994)
Michael Scharf, Reinhard Schneider, Georg Casari, Peer Bork, Alfonso Valencia, Christos A. Ouzounis, Chris Sander
GeneQuiz: A Workbench for Sequence Analysis. ISMB (1994)
Chris Sander, Reinhard Schneider
The HSSP data base of protein structure-sequence alignments. Nucleic Acids Res. 21 (13) (1993)
Chris Sander, Reinhard Schneider, Pieter F. W. Stouten
The Human Genome and High Performance Computing in Molecular Biology. Supercomputer (1992)

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Publication Activity (10 Years)

Top Topics

Top Venues

Reinhard Schneider