Evangelos Pafilis

Publication Activity (10 Years)

Years Active: 2004-2023
Publications (10 Years): 8

Top Venues

Bioinform.

Database J. Biol. Databases Curation

J. Biomed. Semant.

BioNLP (Shared Task)

Heidelberg University (PHD)

Education History

Heidelberg University

PHD

Publications

Robert M. Waterhouse, Anne-Françoise Adam-Blondon, Bachir Balech, Endre Barta, Katharina F. Heil, Graham M. Hughes, Lars S. Jermiin, Matús Kalas, Jerry Lanfear, Evangelos Pafilis, Aristotelis C. Papageorgiou, Fotis E. Psomopoulos, Niels Raes, Josephine Burgin, Toni Gabaldón
The ELIXIR Biodiversity Community: Understanding short- and long-term changes in biodiversity. F1000Research 12 (2023)
Fotis A. Baltoumas, Evangelos Karatzas, David Páez-Espino, Nefeli K. Venetsianou, Eleni Aplakidou, Anastasis Oulas, Robert D. Finn, Sergey Ovchinnikov, Evangelos Pafilis, Nikos Kyrpides, Georgios A. Pavlopoulos
Exploring microbial functional biodiversity at the protein family level - From metagenomic sequence reads to annotated protein clusters. Frontiers Bioinform. 3 (2023)
Anastasia Chasapi, Michalis Aivaliotis, Lefteris Angelis, Anastasios Chanalaris, Ioannis Iliopoulos, Ilias Kappas, Christos Karapiperis, Nikos Kyrpides, Evangelos Pafilis, Eleftherios Panteris, Pantelis Topalis, George Tsiamis, Ioannis S. Vizirianakis, Metaxia Vlassi, Vasilis J. Promponas, Christos A. Ouzounis
Establishment of computational biology in Greece and Cyprus: Past, present, and future. PLoS Comput. Biol. 15 (12) (2019)
Evangelos Pafilis, Pier Luigi Buttigieg, Barbra Ferrell, Emiliano Pereira, Julia Schnetzer, Christos Arvanitidis, Lars Juhl Jensen
EXTRACT: interactive extraction of environment metadata and term suggestion for metagenomic sample annotation. Database J. Biol. Databases Curation 2016 (2016)
Qinghua Wang, Shabbir S. Abdul, Lara Almeida, Sophia Ananiadou, Yalbi I. Balderas-Martínez, Riza Batista-Navarro, David Campos, Lucy Chilton, Hui-Jou Chou, Gabriela Contreras, Laurel Cooper, Hong-Jie Dai, Barbra Ferrell, Juliane Fluck, Socorro Gama-Castro, Nancy George, Georgios V. Gkoutos, Afroza Khanam Irin, Lars Juhl Jensen, Silvia Jimenez, Toni Rose Jue, Ingrid M. Keseler, Sumit Madan, Sérgio Matos, Peter McQuilton, Marija Milacic, Matthew E. Mort, Jeyakumar Natarajan, Evangelos Pafilis, Emiliano Pereira, Shruti Rao, Fabio Rinaldi, Karen Rothfels, David Salgado, Raquel M. Silva, Onkar Singh, Raymund Stefancsik, Chu-Hsien Su, Suresh Subramani, Hamsa D. Tadepally, Loukia Tsaprouni, Nicole A. Vasilevsky, Xiaodong Wang, Andrew Chatr-aryamontri, Stanley J. F. Laulederkind, Sherri Matis-Mitchell, Johanna R. McEntyre, Sandra E. Orchard, Sangya Pundir, Raul Rodriguez-Esteban, Kimberly Van Auken, Zhiyong Lu, Mary L. Schaeffer, Cathy H. Wu, Lynette Hirschman, Cecilia N. Arighi
Overview of the interactive task in BioCreative V. Database J. Biol. Databases Curation 2016 (2016)
Petra ten Hoopen, Clara Amid, Pier Luigi Buttigieg, Evangelos Pafilis, Panos Bravakos, Ana Cerdeño-Tárraga, Richard Gibson, Tim Kahlke, Aglaia Legaki, Kada Narayana Murthy, Gabriella Papastefanou, Emiliano Pereira, Marc Rossello, Ana Luisa Toribio, Guy Cochrane
Value, but high costs in post-deposition data curation. Database J. Biol. Databases Curation 2016 (2016)
Helen Cook, Evangelos Pafilis, Lars Juhl Jensen
A dictionary- and rule-based system for identification of bacteria and habitats in text. BioNLP (Shared Task) (2016)
Pier Luigi Buttigieg, Evangelos Pafilis, Suzanna E. Lewis, Mark P. Schildhauer, Ramona L. Walls, Christopher J. Mungall
The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation. J. Biomed. Semant. 7 (2016)
Evangelos Pafilis, Sune Pletscher-Frankild, Julia Schnetzer, Lucia Fanini, Sarah Faulwetter, Christina Pavloudi, Katerina Vasileiadou, Patrick Leary, Jennifer Hammock, Katja Schulz, Cynthia Sims Parr, Christos Arvanitidis, Lars Juhl Jensen
ENVIRONMENTS and EOL: identification of Environment Ontology terms in text and the annotation of the Encyclopedia of Life. Bioinform. 31 (11) (2015)
Nikolas Papanikolaou, Georgios A. Pavlopoulos, Evangelos Pafilis, Theodosios Theodosiou, Reinhard Schneider, Venkata P. Satagopam, Christos A. Ouzounis, Aristides G. Eliopoulos, Vasilis J. Promponas, Ioannis Iliopoulos
BioTextQuest+: a knowledge integration platform for literature mining and concept discovery. Bioinform. 31 (6) (2015)
Nikolas Papanikolaou, Georgios A. Pavlopoulos, Evangelos Pafilis, Theodosios Theodosiou, Reinhard Schneider, Venkata P. Satagopam, Christos A. Ouzounis, Aristides G. Eliopoulos, Vasilis J. Promponas, Ioannis Iliopoulos
: a knowledge integration platform for literature mining and concept discovery. Bioinform. 30 (22) (2014)
Evangelos Pafilis, Georgios A. Pavlopoulos, Venkata P. Satagopam, Nikolas Papanikolaou, Heiko Horn, Christos Arvanitidis, Lars Juhl Jensen, Reinhard Schneider, Ioannis Iliopoulos
OnTheFly 2.0: A tool for automatic annotation of files and biological information extraction. BIBE (2013)
Nikolas Papanikolaou, Evangelos Pafilis, Stavros Nikolaou, Christos A. Ouzounis, Ioannis Iliopoulos, Vasilis J. Promponas
BioTextQuest: a web-based biomedical text mining suite for concept discovery. Bioinform. 27 (23) (2011)
Toshiaki Katayama, Kazuharu Arakawa, Mitsuteru Nakao, Keiichiro Ono, Kiyoko F. Aoki-Kinoshita, Yasunori Yamamoto, Atsuko Yamaguchi, Shuichi Kawashima, Hong-Woo Chun, Jan Aerts, Bruno Aranda, Lord H. Barboza, Raoul Jean Pierre Bonnal, Richard M. Bruskiewich, Jan Christian Bryne, José María Fernández, Akira Funahashi, Paul M. K. Gordon, Naohisa Goto, Andreas Groscurth, Alex Gutteridge, Richard C. G. Holland, Yoshinobu Kano, Edward A. Kawas, Arnaud Kerhornou, Eri Kibukawa, Akira R. Kinjo, Michael Kuhn, Hilmar Lapp, Heikki Lehväslaiho, Hiroyuki Nakamura, Yasukazu Nakamura, Tatsuya Nishizawa, Chikashi Nobata, Tamotsu Noguchi, Thomas M. Oinn, Shinobu Okamoto, Stuart Owen, Evangelos Pafilis, Matthew R. Pocock, Pjotr Prins, René Ranzinger, Florian Reisinger, Lukasz Salwínski, Mark J. Schreiber, Martin Senger, Yasumasa Shigemoto, Daron M. Standley, Hideaki Sugawara, Toshiyuki Tashiro, Oswaldo Trelles, Rutger A. Vos, Mark D. Wilkinson, William S. York, Christian M. Zmasek, Kiyoshi Asai, Toshihisa Takagi
The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. J. Biomed. Semant. 1 (2010)
Seán I. O'Donoghue, Heiko Horn, Evangelos Pafilis, Sven Haag, Michael Kuhn, Venkata P. Satagopam, Reinhard Schneider, Lars Juhl Jensen
Reflect: A practical approach to web semantics. J. Web Semant. 8 (2-3) (2010)
Georgios A. Pavlopoulos, Evangelos Pafilis, Michael Kuhn, Sean D. Hooper, Reinhard Schneider
OnTheFly: a tool for automated document-based text annotation, data linking and network generation. Bioinform. 25 (7) (2009)
Heinz Stockinger, Teresa K. Attwood, Shahid Nadeem Chohan, Richard G. Côté, Philippe Cudré-Mauroux, Laurent Falquet, Pedro L. Fernandes, Robert D. Finn, Taavi Hupponen, Eija Korpelainen, Alberto Labarga, Aurélie Laugraud, Tania Lima, Evangelos Pafilis, Marco Pagni, Steve Pettifer, Isabelle Phan, Nazim Rahman
Experience using web services for biological sequence analysis. Briefings Bioinform. 9 (6) (2008)
Georgios A. Pavlopoulos, Seán I. O'Donoghue, Venkata P. Satagopam, Theodoros G. Soldatos, Evangelos Pafilis, Reinhard Schneider
Arena3D: visualization of biological networks in 3D. BMC Syst. Biol. 2 (2008)
Ela Hunt, Evangelos Pafilis, Inga Tulloch, John Wilson
Index-Driven XML Data Integration to Support Functional Genomics. DILS (2004)

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Publication Activity (10 Years)

Top Topics

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Evangelos Pafilis