Ramona L. Walls

Publication Activity (10 Years)

Years Active: 2012-2022
Publications (10 Years): 17

Top Topics

Development Kit

Data Management

Top Venues

Database J. Biol. Databases Curation

J. Biomed. Semant.

ICBO/BioCreative

Publications

Ian R. Braun, Pablo Alarcón Moreno, Emily Hartley, Daniel Olson, Nirupama Benis, Ronald Cornet, Mark D. Wilkinson, Ramona L. Walls
Leveraging Biolink for Interoperability between Semantic Models. AMIA (2022)
Nicolas Matentzoglu, Damien Goutte-Gattat, Shawn Zheng Kai Tan, James P. Balhoff, Seth Carbon, Anita R. Caron, William D. Duncan, Joe E. Flack, Melissa A. Haendel, Nomi L. Harris, William R. Hogan, Charles Tapley Hoyt, Rebecca C. Jackson, Hyeongsik Kim, Hüseyin Kir, Martin Larralde, Julie A. McMurry, James A. Overton, Bjoern Peters, Clare Pilgrim, Raymund Stefancsik, Sofia M. C. Robb, Sabrina Toro, Nicole A. Vasilevsky, Ramona L. Walls, Christopher J. Mungall, David Osumi-Sutherland
Ontology Development Kit: a toolkit for building, maintaining, and standardising biomedical ontologies. CoRR (2022)
Nicolas Matentzoglu, Damien Goutte-Gattat, Shawn Zheng Kai Tan, James P. Balhoff, Seth Carbon, Anita R. Caron, William D. Duncan, Joe E. Flack, Melissa A. Haendel, Nomi L. Harris, William R. Hogan, Charles Tapley Hoyt, Rebecca C. Jackson, Hyeongsik Kim, Hüseyin Kir, Martin Larralde, Julie A. McMurry, James A. Overton, Bjoern Peters, Clare Pilgrim, Raymund Stefancsik, Sofia M. C. Robb, Sabrina Toro, Nicole A. Vasilevsky, Ramona L. Walls, Christopher J. Mungall, David Osumi-Sutherland
Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies. Database J. Biol. Databases Curation 2022 (2022) (2022)
Rebecca C. Jackson, Nicolas Matentzoglu, James A. Overton, Randi Vita, James P. Balhoff, Pier Luigi Buttigieg, Seth Carbon, Mélanie Courtot, Alexander D. Diehl, Damion M. Dooley, William D. Duncan, Nomi L. Harris, Melissa A. Haendel, Suzanna E. Lewis, Darren A. Natale, David Osumi-Sutherland, Alan Ruttenberg, Lynn M. Schriml, Barry Smith, Christian J. Stoeckert Jr., Nicole A. Vasilevsky, Ramona L. Walls, Jie Zheng, Christopher J. Mungall, Bjoern Peters
OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies. Database J. Biol. Databases Curation 2021 (2021)
Joan E. Damerow, Charuleka Varadharajan, Kristin Boye, Eoin L. Brodie, Madison Burrus, K. Dana Chadwick, Robert Crystal-Ornelas, Hesham Elbashandy, Ricardo J. Eloy Alves, Kim S. Ely, Amy E. Goldman, Ted Haberman, Valerie C. Hendrix, Zarine Kakalia, Kenneth M. Kemner, Annie B. Kersting, Nancy Merino, Fianna O'Brien, Zach Perzan, Emily Robles, Patrick Sorensen, James C. Stegen, Ramona L. Walls, Pamela Weisenhorn, Mavrik Zavarin, Deborah A. Agarwal
Sample Identifiers and Metadata to Support Data Management and Reuse in Multidisciplinary Ecosystem Sciences. Data Sci. J. 20 (2021)
Ramona L. Walls, Jeffery S. Barrett, Alexandre Betourne, Emily Hartley, Jane Larkindale, Daniel Olson, William T. Roddy, Amanda Borens
A Responsive Data Curation and Integration Pipeline for Rare Disease Data. AMIA (2021)
Faryad Sahneh, Meghan A. Balk, Marina Kisley, Chi-Kwan Chan, Mercury Fox, Brian Nord, Eric Lyons, Tyson Swetnam, Daniela Huppenkothen, Will Sutherland, Ramona L. Walls, Daven P. Quinn, Tonantzin Tarin, David S. LeBauer, David Ribes, Dunbar P. Birnie III, Carol Lushbough, Eric Carr, Grey Nearing, Jeremy Fischer, Kevin Tyle, Luis Carrasco, Meagan Lang, Peter W. Rose, Richard R. Rushforth, Samapriya Roy, Thomas Matheson, Tina Lee, C. Titus Brown, Tracy K. Teal, Monica Papes, Stephen G. Kobourov, Nirav C. Merchant
Ten simple rules to cultivate transdisciplinary collaboration in data science. PLoS Comput. Biol. 17 (5) (2021)
Stephen M. Richard, David Vieglais, Hong Cui, Neil Davies, John Deck, Quan Gan, Eric C. Kansa, Sarah Whitcher Kansa, John A. Kunze, Danny Mandel, Christopher Meyer, Thomas Orrell, Sarah Ramdeen, Rebecca Snyder, Ramona L. Walls, Yuxuan Zhou, Kerstin A. Lehnert
Internet of Samples. ASIST (2021)
Anne E. Thessen, Ramona L. Walls, Lars Vogt, Jessica Singer, Robert Warren, Pier Luigi Buttigieg, James P. Balhoff, Christopher J. Mungall, Deborah L. McGuinness, Brian J. Stucky, Matthew J. Yoder, Melissa A. Haendel
Transforming the study of organisms: Phenomic data models and knowledge bases. PLoS Comput. Biol. 16 (11) (2020)
Maria Esteva, Ramona L. Walls, Andrew B. Magill, Weijia Xu, Ruizhu Huang, James D. Carson, Jawon Song
Identifier Services: Modeling and Implementing Distributed Data Management in Cyberinfrastructure. Data Inf. Manag. 3 (1) (2019)
Lisa C. Harper, Jacqueline D. Campbell, Ethalinda K. S. Cannon, Sook Jung, Monica Poelchau, Ramona L. Walls, Carson M. Andorf, Elizabeth Arnaud, Tanya Z. Berardini, Clayton L. Birkett, Steven B. Cannon, James D. Carson, Bradford Condon, Laurel Cooper, Nathan A. Dunn, Christine G. Elsik, Andrew Farmer, Stephen P. Ficklin, David Grant, Emily S. Grau, Nic Herndon, Zhi-Liang Hu, Jodi L. Humann, Pankaj Jaiswal, Clément Jonquet, Marie-Angélique Laporte, Pierre Larmande, Gerard R. Lazo, Fiona McCarthy, Naama Menda, Christopher J. Mungall, Monica C. Munoz-Torres, Sushma Naithani, Rex T. Nelson, Daureen Nesdill, Carissa A. Park, James M. Reecy, Leonore Reiser, Lacey-Anne Sanderson, Taner Z. Sen, Margaret Staton, Sabarinath Subramaniam, Marcela Karey Tello-Ruiz, Victor Unda, Deepak R. Unni, Liya Wang, Doreen Ware, Jill L. Wegrzyn, Jason Williams, Margaret Woodhouse, Jing Yu, Doreen Main
AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture. Database J. Biol. Databases Curation 2018 (2018)
Maria Esteva, Ramona L. Walls
Identifier Services: Tracking Objects and Metadata Across Time and Distributed Storage Systems. Dublin Core Conference (2016)
Pier Luigi Buttigieg, Mark Jensen, Ramona L. Walls, Christopher J. Mungall
Environmental Semantics for Sustainable Development in an Interconnected Biosphere. ICBO/BioCreative (2016)
Carrine E. Blank, Hong Cui, Lisa R. Moore, Ramona L. Walls
MicrO: an ontology of phenotypic and metabolic characters, assays, and culture media found in prokaryotic taxonomic descriptions. J. Biomed. Semant. 7 (2016)
Ramona L. Walls
Defining and Sustaining Populations and Communities. ICBO/BioCreative (2016)
Weijia Xu, Ruizhu Huang, Maria Esteva, Jawon Song, Ramona L. Walls
Content-based comparison for collections identification. IEEE BigData (2016)
Pier Luigi Buttigieg, Evangelos Pafilis, Suzanna E. Lewis, Mark P. Schildhauer, Ramona L. Walls, Christopher J. Mungall
The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation. J. Biomed. Semant. 7 (2016)
Philippe Rocca-Serra, Ramona L. Walls, Jacob Parnell, Rachel Gallery, Jie Zheng, Susanna-Assunta Sansone, Alejandra N. González-Beltrán
Modeling a microbial community and biodiversity assay with OBO Foundry ontologies: the interoperability gains of a modular approach. Database J. Biol. Databases Curation 2015 (2015)
Philippe Rocca-Serra, Ramona L. Walls, Jacob Parnell, Rachel Gallery, Jie Zheng, Susanna-Assunta Sansone, Alejandra N. González-Beltrán
Modeling a Microbial Community and Biodiversity Assay with OBI and PCO OBO Foundry Ontologies: the Interoperability Gains of a Modular Approach. ICBO (2014)
Wasila M. Dahdul, Hong Cui, Paula M. Mabee, Christopher J. Mungall, David Osumi-Sutherland, Ramona L. Walls, Melissa A. Haendel
Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology. J. Biomed. Semant. 5 (2014)
Ramona L. Walls, Barry Smith, Justin Elser, Albert Goldfain, Dennis W. Stevenson, Pankaj Jaiswal
A plant disease extension of the Infectious Disease Ontology. ICBO (2012)
Ramona L. Walls, Hong Cui, James A. Macklin, Chris Mungall, Laurel Cooper, Dennis W. Stevenson, Pankaj Jaiswal
Mapping of glossary terms from the Flora of North America to the Plant Ontology enhances both resources. ICBO (2012)