Anne E. Thessen

Publication Activity (10 Years)

Years Active: 2010-2023
Publications (10 Years): 17

Top Topics

Biological Knowledge

Gene Expression

Top Venues

Database J. Biol. Databases Curation

Publications

Jennifer L. Clarke, Laurel D. Cooper, Monica F. Poelchau, Tanya Z. Berardini, Justin Elser, Andrew D. Farmer, Stephen P. Ficklin, Sunita Kumari, Marie-Angélique Laporte, Rex T. Nelson, Rie Sadohara, Peter Selby, Anne E. Thessen, Brandon Whitehead, Taner Z. Sen
Data sharing and ontology use among agricultural genetics, genomics, and breeding databases and resources of the Agbiodata Consortium. Database J. Biol. Databases Curation 2023 (2023)
J. Harry Caufield, Tim E. Putman, Kevin Schaper, Deepak R. Unni, Harshad Hegde, Tiffany J. Callahan, Luca Cappelletti, Sierra A. T. Moxon, Vida Ravanmehr, Seth Carbon, Lauren E. Chan, Katherina Cortes, Kent A. Shefchek, Glass Elsarboukh, James P. Balhoff, Tommaso Fontana, Nicolas Matentzoglu, Richard M. Bruskiewich, Anne E. Thessen, Nomi L. Harris, Monica C. Munoz-Torres, Melissa A. Haendel, Peter N. Robinson, Marcin P. Joachimiak, Christopher J. Mungall, Justin T. Reese
KG-Hub - Building and Exchanging Biological Knowledge Graphs. CoRR (2023)
Lauren E. Chan, Anne E. Thessen, William D. Duncan, Nicolas Matentzoglu, Charles Schmitt, Cynthia J. Grondin, Nicole Vasilevsky, Julie A. McMurry, Peter N. Robinson, Christopher J. Mungall, Melissa A. Haendel
The Environmental Conditions, Treatments, and Exposures Ontology (ECTO): connecting toxicology and exposure to human health and beyond. J. Biomed. Semant. 14 (1) (2023)
Jennifer L. Clarke, Laurel D. Cooper, Monica F. Poelchau, Tanya Z. Berardini, Justin Elser, Andrew D. Farmer, Stephen P. Ficklin, Sunita Kumari, Marie-Angélique Laporte, Rex T. Nelson, Rie Sadohara, Peter Selby, Anne E. Thessen, Brandon Whitehead, Taner Z. Sen
Data sharing and ontology use among agricultural genetics, genomics, and breeding databases and resources of the AgBioData Consortium. CoRR (2023)
Anne E. Thessen, Laurel Cooper, Tyson L. Swetnam, Harshad Hegde, Justin T. Reese, Justin Elser, Pankaj Jaiswal
Using knowledge graphs to infer gene expression in plants. Frontiers Artif. Intell. 6 (2023)
Nicolas Matentzoglu, James P. Balhoff, Susan M. Bello, Chris Bizon, Matthew H. Brush, Tiffany J. Callahan, Christopher G. Chute, William D. Duncan, Chris T. A. Evelo, Davera Gabriel, John Graybeal, Alasdair J. G. Gray, Benjamin M. Gyori, Melissa A. Haendel, Henriette Harmse, Nomi L. Harris, Ian Harrow, Harshad Hegde, Amelia L. Hoyt, Charles Tapley Hoyt, Dazhi Jiao, Ernesto Jiménez-Ruiz, Simon Jupp, Hyeongsik Kim, Sebastian Köhler, Thomas Liener, Qinqin Long, James Malone, James A. McLaughlin, Julie A. McMurry, Sierra Moxon, Monica C. Munoz-Torres, David Osumi-Sutherland, James A. Overton, Bjoern Peters, Tim E. Putman, Núria Queralt-Rosinach, Kent A. Shefchek, Harold Solbrig, Anne E. Thessen, Tania Tudorache, Nicole A. Vasilevsky, Alex H. Wagner, Christopher J. Mungall
A Simple Standard for Sharing Ontological Mappings (SSSOM). Database J. Biol. Databases Curation 2022 (2022) (2022)
Marcin P. Joachimiak, Harshad Hegde, William D. Duncan, Justin T. Reese, Luca Cappelletti, Anne E. Thessen, Christopher J. Mungall
KG-Microbe: A Reference Knowledge-Graph and Platform for Harmonized Microbial Information. ICBO (2021)
Nicolas Matentzoglu, James P. Balhoff, Susan M. Bello, Chris Bizon, Matthew H. Brush, Tiffany J. Callahan, Christopher G. Chute, William D. Duncan, Chris T. A. Evelo, Davera Gabriel, John Graybeal, Alasdair J. G. Gray, Benjamin M. Gyori, Melissa A. Haendel, Henriette Harmse, Nomi L. Harris, Ian Harrow, Harshad Hegde, Amelia L. Hoyt, Charles Tapley Hoyt, Dazhi Jiao, Ernesto Jiménez-Ruiz, Simon Jupp, Hyeongsik Kim, Sebastian Köhler, Thomas Liener, Qinqin Long, James Malone, James A. McLaughlin, Julie A. McMurry, Sierra A. T. Moxon, Monica C. Munoz-Torres, David Osumi-Sutherland, James A. Overton, Bjoern Peters, Tim E. Putman, Núria Queralt-Rosinach, Kent A. Shefchek, Harold Solbrig, Anne E. Thessen, Tania Tudorache, Nicole A. Vasilevsky, Alex H. Wagner, Christopher J. Mungall
A Simple Standard for Sharing Ontological Mappings (SSSOM). CoRR (2021)
Lauren Chan, Nicole A. Vasilevsky, Anne E. Thessen, Julie A. McMurry, Melissa A. Haendel
The landscape of nutri-informatics: a review of current resources and challenges for integrative nutrition research. Database J. Biol. Databases Curation 2021 (2021)
Lauren E. Chan, Nicole A. Vasilevsky, Anne E. Thessen, Nicolas Matentzoglu, William D. Duncan, Christopher J. Mungall, Melissa A. Haendel
A Semantic Model Leveraging Pattern-based Ontology Terms to Bridge Environmental Exposures and Health Outcomes. ICBO (2021)
Quentin Groom, Anton Güntsch, Pieter Huybrechts, Nicole Kearney, Siobhan Leachman, Nicky Nicolson, Roderic D. M. Page, David P. Shorthouse, Anne E. Thessen, Elspeth Haston
People are essential to linking biodiversity data. Database J. Biol. Databases Curation 2020 (2020)
Kent A. Shefchek, Nomi L. Harris, Michael A. Gargano, Nicolas Matentzoglu, Deepak R. Unni, Matthew H. Brush, Dan Keith, Tom Conlin, Nicole A. Vasilevsky, Xingmin Aaron Zhang, James P. Balhoff, Larry Babb, Susan M. Bello, Hannah Blau, Yvonne M. Bradford, Seth Carbon, Leigh Carmody, Lauren E. Chan, Valentina Cipriani, Alayne Cuzick, Maria G. Della Rocca, Nathan A. Dunn, Shahim Essaid, Petra Fey, Christian A. Grove, Jean-Philippe F. Gourdine, Ada Hamosh, Midori A. Harris, Ingo Helbig, Maureen E. Hoatlin, Marcin P. Joachimiak, Simon Jupp, Kenneth B. Lett, Suzanna E. Lewis, Craig McNamara, Zoë May Pendlington, Clare Pilgrim, Tim E. Putman, Vida Ravanmehr, Justin T. Reese, Erin Rooney Riggs, Sofia M. C. Robb, Paola Roncaglia, James Seager, Erik Segerdell, Morgan Similuk, Andrea L. Storm, Courtney Thaxon, Anne E. Thessen, Julius O. B. Jacobsen, Julie A. McMurry, Tudor Groza, Sebastian Köhler, Damian Smedley, Peter N. Robinson, Christopher J. Mungall, Melissa A. Haendel, Monica C. Munoz-Torres, David Osumi-Sutherland
The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species. Nucleic Acids Res. 48 (Database-Issue) (2020)
Anne E. Thessen, Ramona L. Walls, Lars Vogt, Jessica Singer, Robert Warren, Pier Luigi Buttigieg, James P. Balhoff, Christopher J. Mungall, Deborah L. McGuinness, Brian J. Stucky, Matthew J. Yoder, Melissa A. Haendel
Transforming the study of organisms: Phenomic data models and knowledge bases. PLoS Comput. Biol. 16 (11) (2020)
Anne E. Thessen, Matt Woodburn, Dimitrios Koureas, Deborah Paul, Michael Conlon, David P. Shorthouse, Sarah Ramdeen
Proper Attribution for Curation and Maintenance of Research Collections: Metadata Recommendations of the RDA/TDWG Working Group. Data Sci. J. 18 (2019)
Anne E. Thessen, Jorrit H. Poelen, Matthew Collins, Jen Hammock
20 GB in 10 minutes: A case for linking major biodiversity databases using an open socio-technical infrastructure and a pragmatic, cross-institutional collaboration. PeerJ Prepr. 6 (2018)
Anne E. Thessen, Jorrit H. Poelen, Matthew Collins, Jen Hammock
20 GB in 10 minutes: a case for linking major biodiversity databases using an open socio-technical infrastructure and a pragmatic, cross-institutional collaboration. PeerJ Comput. Sci. 4 (2018)
Anne E. Thessen, Sean McGinnis, Elizabeth W. North
Lessons learned while building the Deepwater Horizon Database: Toward improved data sharing in coastal science. Comput. Geosci. 87 (2016)
Leo Obrst, Michael Grüninger, Ken Baclawski, Mike Bennett, Dan Brickley, Gary Berg-Cross, Pascal Hitzler, Krzysztof Janowicz, Christine Kapp, Oliver Kutz, Christoph Lange, Anatoly Levenchuk, Francesca Quattri, Alan L. Rector, Todd Schneider, Simon Spero, Anne E. Thessen, Marcela Vegetti, Amanda Vizedom, Andrea Westerinen, Matthew West, Peter Yim
Semantic Web and Big Data meets Applied Ontology - The Ontology Summit 2014. Appl. Ontology 9 (2) (2014)
Matthew S. Mayernik, Tim DiLauro, Ruth E. Duerr, Elliot Metsger, Anne E. Thessen, G. Sayeed Choudhury
Data Conservancy Provenance, Context, and Lineage Services: Key Components for Data Preservation and Curation. Data Sci. J. 12 (2013)
Neela Enke, Anne E. Thessen, Kerstin Bach, Jörg Bendix, Bernhard Seeger, Birgit Gemeinholzer
The user's view on biodiversity data sharing - Investigating facts of acceptance and requirements to realize a sustainable use of research data -. Ecol. Informatics 11 (2012)
Anne E. Thessen, Hong Cui, Dmitry Mozzherin
Applications of Natural Language Processing in Biodiversity Science. Adv. Bioinformatics 2012 (2012)
Ahmed Abdeen Hamed, Byung Suk Lee, Anne E. Thessen
Ecosystems Monitoring: An Information Extraction and Event Processing Scientific Workflow. SERVICES (2010)