Andrew D. Farmer

Publication Activity (10 Years)

Years Active: 1997-2023
Publications (10 Years): 7

Top Topics

Visual Exploration

Visualization Tools

Homomorphic Encryption

Top Venues

Nucleic Acids Res.

Database J. Biol. Databases Curation

Publications

Jennifer L. Clarke, Laurel D. Cooper, Monica F. Poelchau, Tanya Z. Berardini, Justin Elser, Andrew D. Farmer, Stephen P. Ficklin, Sunita Kumari, Marie-Angélique Laporte, Rex T. Nelson, Rie Sadohara, Peter Selby, Anne E. Thessen, Brandon Whitehead, Taner Z. Sen
Data sharing and ontology use among agricultural genetics, genomics, and breeding databases and resources of the Agbiodata Consortium. Database J. Biol. Databases Curation 2023 (2023)
Alan M. Cleary, Andrew D. Farmer
Genome Context Viewer (GCV) version 2: enhanced visual exploration of multiple annotated genomes. Nucleic Acids Res. 51 (W1) (2023)
Jennifer L. Clarke, Laurel D. Cooper, Monica F. Poelchau, Tanya Z. Berardini, Justin Elser, Andrew D. Farmer, Stephen P. Ficklin, Sunita Kumari, Marie-Angélique Laporte, Rex T. Nelson, Rie Sadohara, Peter Selby, Anne E. Thessen, Brandon Whitehead, Taner Z. Sen
Data sharing and ontology use among agricultural genetics, genomics, and breeding databases and resources of the AgBioData Consortium. CoRR (2023)
Éloi Durant, Mathieu Rouard, Eric W. Ganko, Cédric Muller, Alan M. Cleary, Andrew D. Farmer, Matthieu G. Conte, François Sabot
Ten simple rules for developing visualization tools in genomics. PLoS Comput. Biol. 18 (11) (2022)
Alan M. Cleary, Andrew D. Farmer
Genome Context Viewer: visual exploration of multiple annotated genomes using microsynteny. Bioinform. 34 (9) (2018)
Yun Zheng, Vandana Hivrale, Xiaotuo Zhang, Babu Valliyodan, Christine Lelandais-Brière, Andrew D. Farmer, Gregory D. May, Martin Crespi, Henry T. Nguyen, Ramanjulu Sunkar
Small RNA profiles in soybean primary root tips under water deficit. BMC Syst. Biol. 10 (S-5) (2016)
Sudhansu Dash, Jacqueline D. Campbell, Ethalinda K. S. Cannon, Alan M. Cleary, Wei Huang, Scott R. Kalberer, Vijay Karingula, Alex G. Rice, Jugpreet Singh, Pooja E. Umale, Nathan T. Weeks, Andrew P. Wilkey, Andrew D. Farmer, Steven B. Cannon
Legume information system (LegumeInfo.org): a key component of a set of federated data resources for the legume family. Nucleic Acids Res. 44 (Database-Issue) (2016)
Kamal Gajendran, Michael D. Gonzales, Andrew D. Farmer, Eric Archuleta, Joe Win, Mark E. Waugh, Sophien Kamoun
-plant interactions. Nucleic Acids Res. 34 (Database-Issue) (2006)
Michael D. Gonzales, Eric Archuleta, Andrew D. Farmer, Kamal Gajendran, David M. Grant, Randy C. Shoemaker, William D. Beavis, Mark E. Waugh
The Legume Information System (LIS): an integrated information resource for comparative legume biology. Nucleic Acids Res. 33 (Database-Issue) (2005)
Callum J. Bell, Richard A. Dixon, Andrew D. Farmer, H. Raul Flores, Jeff T. Inman, Robert A. Gonzales, Maria J. Harrison, Nancy L. Paiva, Angela D. Scott, Jennifer W. Weller, Gregory D. May
The Medicago Genome Initiative: a model legume database. Nucleic Acids Res. 29 (1) (2001)
Adam C. Siepel, Andrew D. Farmer, Andrew N. Tolopko, Mingzhe Zhuang, Pedro Mendes, William D. Beavis, Bruno W. S. Sobral
ISYS: a decentralized, component-based approach to the integration of heterogeneous bioinformatics resources. Bioinform. 17 (1) (2001)
Adam C. Siepel, Andrew N. Tolopko, Andrew D. Farmer, Peter A. Steadman, Faye D. Schilkey, B. Dawn Perry, William D. Beavis
An integration platform for heterogeneous bioinformatics software components. IBM Syst. J. 40 (2) (2001)
Harry Mangalam, Jason E. Stewart, Jiaye Zhou, Karen Schlauch, Mark E. Waugh, Guanghong Chen, Andrew D. Farmer, Greg Colello, Jennifer W. Weller
GeneX: An Open Source gene expression database and integrated tool set. IBM Syst. J. 40 (2) (2001)
Carol Harger, Guanghong Chen, Andrew D. Farmer, Wen Huang, Jeff T. Inman, Donald Kiphart, Faye D. Schilkey, M. P. Skupski, Jennifer W. Weller
The Genome Sequence DataBase. Nucleic Acids Res. 28 (1) (2000)
G. A. Seluja, Andrew D. Farmer, Mia McLeod, Carol Harger, Peter A. Schad
Establishing a method of vector contamination identification in database sequences. Bioinform. 15 (2) (1999)
M. P. Skupski, M. Booker, Andrew D. Farmer, M. Harpold, Wen Huang, Jeff T. Inman, Donald Kiphart, C. Kodira, S. Root, Faye D. Schilkey, Jolene Schwertfeger, Adam C. Siepel, David Stamper, Nina Thayer, R. Thompson, Jennifer R. Wortman, J. J. Zhuang, Carol Harger
The Genome Sequence DataBase: towards an integrated functional genomics resource. Nucleic Acids Res. 27 (1) (1999)
Carol Harger, M. P. Skupski, J. Bingham, Andrew D. Farmer, S. Hoisie, Peter T. Hraber, Donald Kiphart, L. Krakowski, Mia McLeod, Jolene Schwertfeger, G. A. Seluja, Adam C. Siepel, Gautam Singh, David Stamper, Peter A. Steadman, Nina Thayer, R. Thompson, P. Wargo, Mark E. Waugh, J. J. Zhuang, Peter A. Schad
The Genome Sequence DataBase (GSDB): improving data quality and data access. Nucleic Acids Res. 26 (1) (1998)
Carol Harger, Marian Skupski, Ethan Allen, Christopher Clark, David Crowley, Emily Dickinson, David Easley, Ada Espinosa-Lujan, Andrew D. Farmer, Chris A. Fields, Leandrita Flores, Lynn Harris, Gifford Keen, Maurice Manning, Michael P. McLeod, John O'Neill, Maria Pumilia, Rhonda Reinert, David Rider, John Rohrlich, Yolanda Romero, Jolene Schwertfeger, Gustavo Seluja, Adam C. Siepel, Gautam Singh, Linda Smyth, David Stamper, Judy Stein, Randy Suggs, Rajini Takkallapalli, Nina Thayer, Gary Thompson, Colleen Walsh, Frederick Wedgeworth III, Peter A. Schad
The Genome Sequence DataBase version 1.0 (GSDB): from low pass sequences to complete genomes. Nucleic Acids Res. 25 (1) (1997)