Alan M. Cleary

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 8

Top Topics

Phylogenetic Analysis

Visual Exploration

Visualization Tools

Top Venues

Nucleic Acids Res.

Publications

Alan M. Cleary, Joseph Winjum, Jordan Dood, Shunsuke Inenaga
The CDAWG Index and Pattern Matching on Grammar-Compressed Strings. CoRR (2024)
Alan M. Cleary, Joseph Winjum, Jordan Dood, Shunsuke Inenaga
Revisiting the Folklore Algorithm for Random Access to Grammar-Compressed Strings. CoRR (2024)
Alan M. Cleary, Andrew D. Farmer
Genome Context Viewer (GCV) version 2: enhanced visual exploration of multiple annotated genomes. Nucleic Acids Res. 51 (W1) (2023)
Indika Kahanda, Buwani Manuweera, Brendan Mumey, Thiruvarangan Ramaraj, Alan M. Cleary, Joann Mudge
Genotype-to-Phenotype Associations with Frequented Region Variants. BIBM (2023)
Alan M. Cleary, Jordan Dood
Constructing the CDAWG CFG using LCP-Intervals. DCC (2023)
Éloi Durant, Mathieu Rouard, Eric W. Ganko, Cédric Muller, Alan M. Cleary, Andrew D. Farmer, Matthieu G. Conte, François Sabot
Ten simple rules for developing visualization tools in genomics. PLoS Comput. Biol. 18 (11) (2022)
Alan M. Cleary, Andrew D. Farmer
Genome Context Viewer: visual exploration of multiple annotated genomes using microsynteny. Bioinform. 34 (9) (2018)
Sudhansu Dash, Jacqueline D. Campbell, Ethalinda K. S. Cannon, Alan M. Cleary, Wei Huang, Scott R. Kalberer, Vijay Karingula, Alex G. Rice, Jugpreet Singh, Pooja E. Umale, Nathan T. Weeks, Andrew P. Wilkey, Andrew D. Farmer, Steven B. Cannon
Legume information system (LegumeInfo.org): a key component of a set of federated data resources for the legume family. Nucleic Acids Res. 44 (Database-Issue) (2016)