Brendan Mumey

Publication Activity (10 Years)

Years Active: 1993-2024
Publications (10 Years): 31

Top Topics

Integer Linear Programming

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Manuel Cáceres, Brendan Mumey, Santeri Toivonen, Alexandru I. Tomescu
Practical Minimum Path Cover. SEA (2024)
Manuel Cáceres, Massimo Cairo, Andreas Grigorjew, Shahbaz Khan, Brendan Mumey, Romeo Rizzi, Alexandru I. Tomescu, Lucia Williams
Width Helps and Hinders Splitting Flows. ACM Trans. Algorithms 20 (2) (2024)
Fernando H. C. Dias, Manuel Cáceres, Lucia Williams, Brendan Mumey, Alexandru I. Tomescu
A safety framework for flow decomposition problems via integer linear programming. Bioinform. 39 (10) (2023)
Lucia Williams, Alexandru I. Tomescu, Brendan Mumey
Flow Decomposition With Subpath Constraints. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (1) (2023)
Manuel Cáceres, Brendan Mumey, Santeri Toivonen, Alexandru I. Tomescu
Minimum Path Cover: The Power of Parameterization. CoRR (2023)
Thiruvarangan Ramaraj, Bo Wen Liu, Britney Gibbs, Azalea Mendoza, David L. Millman, Brendan Mumey, Matthew Fields, Callum Bell
Development of an ontology for biofilms. BIBM (2023)
Fernando H. C. Dias, Manuel Cáceres, Lucia Williams, Brendan Mumey, Alexandru I. Tomescu
A Safety Framework for Flow Decomposition Problems via Integer Linear Programming. CoRR (2023)
Indika Kahanda, Buwani Manuweera, Brendan Mumey, Thiruvarangan Ramaraj, Alan M. Cleary, Joann Mudge
Genotype-to-Phenotype Associations with Frequented Region Variants. BIBM (2023)
Will Solow, Matthew Barich, Brendan Mumey
Fast Circular Pattern Matching. CoRR (2022)
Manuel Cáceres, Brendan Mumey, Edin Husic, Romeo Rizzi, Massimo Cairo, Kristoffer Sahlin, Alexandru I. Tomescu
Safety in Multi-Assembly via Paths Appearing in All Path Covers of a DAG. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (6) (2022)
Fernando H. C. Dias, Lucia Williams, Brendan Mumey, Alexandru I. Tomescu
Efficient Minimum Flow Decomposition via Integer Linear Programming. J. Comput. Biol. 29 (11) (2022)
Manuel Cáceres, Massimo Cairo, Andreas Grigorjew, Shahbaz Khan, Brendan Mumey, Romeo Rizzi, Alexandru I. Tomescu, Lucia Williams
Width Helps and Hinders Splitting Flows. ESA (2022)
Fernando H. C. Dias, Lucia Williams, Brendan Mumey, Alexandru I. Tomescu
Minimum Flow Decomposition in Graphs with Cycles using Integer Linear Programming. CoRR (2022)
Manuel Cáceres, Massimo Cairo, Brendan Mumey, Romeo Rizzi, Alexandru I. Tomescu
Sparsifying, Shrinking and Splicing for Minimum Path Cover in Parameterized Linear Time. SODA (2022)
Manuel Cáceres, Massimo Cairo, Andreas Grigorjew, Shahbaz Khan, Brendan Mumey, Romeo Rizzi, Alexandru I. Tomescu, Lucia Williams
Width Helps and Hinders Splitting Flows. CoRR (2022)
Manuel Cáceres, Massimo Cairo, Brendan Mumey, Romeo Rizzi, Alexandru I. Tomescu
Minimum Path Cover in Parameterized Linear Time. CoRR (2022)
Fernando H. C. Dias, Lucia Williams, Brendan Mumey, Alexandru I. Tomescu
Fast, Flexible, and Exact Minimum Flow Decompositions via ILP. RECOMB (2022)
Manuel Cáceres, Massimo Cairo, Brendan Mumey, Romeo Rizzi, Alexandru I. Tomescu
A Linear-Time Parameterized Algorithm for Computing the Width of a DAG. WG (2021)
Lucia Williams, Alexandru I. Tomescu, Brendan Mumey
Flow Decomposition with Subpath Constraints. WABI (2021)
Manuel Cáceres, Massimo Cairo, Brendan Mumey, Romeo Rizzi, Alexandru I. Tomescu
Sparsifying, Shrinking and Splicing for Minimum Path Cover in Parameterized Linear Time. CoRR (2021)
Elliott Pryor, Brendan Mumey, Sean Yaw
Scheduling Jobs with Precedence Constraints to Minimize Peak Demand. COCOA (2020)
Lucia Williams, Brendan Mumey
Extending Maximal Perfect Haplotype Blocks to the Realm of Pangenomics. AlCoB (2020)
Manuel Cáceres, Massimo Cairo, Brendan Mumey, Romeo Rizzi, Alexandru I. Tomescu
On the parameterized complexity of the Minimum Path Cover problem in DAGs. CoRR (2020)
Buwani Manuweera, Joann Mudge, Indika Kahanda, Brendan Mumey, Thiruvarangan Ramaraj, Alan Cleary
Pangenome-Wide Association Studies with Frequented Regions. BCB (2019)
Lucia Williams, Gillian Reynolds, Brendan Mumey
RNA Transcript Assembly Using Inexact Flows. BIBM (2019)
Alan Cleary, Thiruvarangan Ramaraj, Indika Kahanda, Joann Mudge, Brendan Mumey
Exploring Frequented Regions in Pan-Genomic Graphs. IEEE ACM Trans. Comput. Biol. Bioinform. 16 (5) (2019)
Buwani Manuweera, Joann Mudge, Indika Kahanda, Brendan Mumey, Thiruvarangan Ramaraj, Alan Cleary
Poster: Pangenome-Wide Association Studies with Frequented Regions. BCB (2019)
Brendan Mumey
Indexing Point Sets for Approximate Bottleneck Distance Queries. CoRR (2018)
Samuel Micka, Sean Yaw, Brittany Terese Fasy, Brendan Mumey, Mike P. Wittie
Efficient multipath flow monitoring. Networking (2017)
Sean Yaw, Brendan Mumey
Scheduling Non-Preemptible Jobs to Minimize Peak Demand. Algorithms 10 (4) (2017)
Alan Cleary, Indika Kahanda, Brendan Mumey, Joann Mudge, Thiruvarangan Ramaraj
Exploring Frequented Regions in Pan-Genomic Graphs. BCB (2017)
Sean Yaw, Eben Howard, Brendan Mumey, Mike P. Wittie
Cooperative group provisioning with latency guarantees in multi-cloud deployments. Comput. Commun. Rev. 45 (3) (2015)
Jielong Xu, Jian Tang, Brendan Mumey, Weiyi Zhang, Kevin A. Kwiat, Charles A. Kamhoua
Cost-Efficient Virtual Server Provisioning and Selection in distributed Data Centers. ICC (2015)
Brendan Mumey, Sean Yaw, Christina Fastnow, David J. Singel
Finding Pathways to Student Success from Data. CSEDU (1) (2015)
Samuel Micka, Utkarsh Goel, Hanlu Ye, Mike P. Wittie, Brendan Mumey
pcp: Internet Latency Estimation Using CDN Replicas. ICCCN (2015)
Brendan Mumey, Samareh Shahmohammadi, Kathryn McManus, Sean Yaw
Parity Balancing Path Flow Decomposition and Routing. GLOBECOM Workshops (2015)
Ivan R. Judson, Brendan Mumey
Minimizing channel rental costs for topology control in multihop wireless networks. ICNC (2014)
Brendan Mumey, Gang Xu, Edith C. H. Ngai
Ubiquitous sensor data collection with mobile users. ICNC (2014)
Sean Yaw, Brendan Mumey
An Exact Algorithm for Non-preemptive Peak Demand Job Scheduling. COCOA (2014)
Sean Yaw, Brendan Mumey, Erin McDonald, Jennifer Lemke
Peak demand scheduling in the Smart Grid. SmartGridComm (2014)
Brendan Mumey, Kelly Spendlove, Binhai Zhu
Extending the lifetime of a WSN by partial covers. ICC (2013)
Brendan Mumey, Jian Tang, Ivan R. Judson, Richard S. Wolff
Beam scheduling and relay assignment in wireless relay networks with smart antennas. INFOCOM (2013)
Brendan Mumey, Riku Jäntti, Sean Yaw
Scheduling uncertain links in multihop cognitive relay networks. GLOBECOM (2013)
Brendan Mumey, Timothy Hahn, Richard S. Wolff
Simple and effective routing and wavelength assignment in transparent optical networks. ICC (2012)
Brendan Mumey, Ivan R. Judson, Jian Tang, Yun Xing
Topology control in multihop wireless networks with multi-beam smart antennas. ICNC (2012)
Brendan Mumey, Jian Tang, Saiichi Hashimoto
Enabling green networking with a power down approach. ICC (2012)
Jian Tang, Brendan Mumey, Yun Xing, Andy Johnson
On exploiting flow allocation with rate adaptation for green networking. INFOCOM (2012)
Jian Tang, Brendan Mumey, Kairat Zhubayev, Richard S. Wolff
Leveraging Cooperative, Channel and Multiuser Diversities for Efficient Resource Allocation in Wireless Relay Networks. IEEE J. Sel. Areas Commun. 30 (9) (2012)
Brendan Mumey, Jian Tang, Ivan R. Judson, David Stevens
On Routing and Channel Selection in Cognitive Radio Mesh Networks. IEEE Trans. Veh. Technol. 61 (9) (2012)
Brendan Mumey, Jian Tang, Yun Xing, Richard S. Wolff
Relay Beam Selection with Directional Antennas. GLOBECOM (2011)
Wenhao Lin, Timothy Hahn, Richard S. Wolff, Brendan Mumey
A distributed impairment aware QoS framework for all-optical networks. Opt. Switch. Netw. 8 (1) (2011)
Shen Wan, Jian Tang, Brendan Mumey, Richard S. Wolff, Weiyi Zhang
Leveraging Multi-User Diversity, Channel Diversity and Spatial Reuse for Efficient Scheduling in Wireless Relay Networks. MASS (2011)
Brendan Mumey, Xia Zhao, Jian Tang, Richard S. Wolff
On Multipath Transmission Scheduling in Cognitive Radio Mesh Networks. GreeNets (2011)
Brendan Mumey, Xia Zhao, Jian Tang, Richard S. Wolff
Transmission Scheduling for Routing Paths in Cognitive Radio Mesh Networks. SECON (2010)
Brendan Mumey, Jian Tang, Timothy Hahn
Algorithmic Aspects of Communications in Multihop Wireless Networks with MIMO Links. ICC (2010)
Jian Tang, Brendan Mumey, Kairat Zhubayev, Richard S. Wolff
On Exploiting Cooperative, Channel and Multiuser Diversities in Wireless Relay Networks. GLOBECOM (2010)
Wenhao Lin, Richard S. Wolff, Brendan Mumey
Decreasing EDFA transients by power shaping. Opt. Switch. Netw. 5 (4) (2008)
Brendan Mumey, Jian Tang, Timothy Hahn
Joint Stream Control and Scheduling in Multihop Wireless Networks with MIMO Links. ICC (2008)
Brendan Mumey, Louise C. Showe, Michael K. Showe
Discovering classes in microarray data using island counts. J. Comb. Optim. 13 (3) (2007)
Robert J. Cimikowski, Brendan Mumey
Approximating the fixed linear crossing number. Discret. Appl. Math. 155 (17) (2007)
Brendan Mumey, Nathaniel Ohler, Thomas Angel, Algirdas J. Jesaitis, Edward A. Dratz
Filtering Epitope Alignments to Improve Protein Surface Prediction. ISPA Workshops (2006)
Minghui Jiang, Brendan Mumey, Zhongping Qin, Andrew Tomascak, Binhai Zhu
Approximations for Two Decomposition-Based Geometric Optimization Problems. ICCSA (3) (2004)
Brendan Mumey, Aditi Sarkar, Tomás Gedeon, Alexander Dimitrov, John P. Miller
Finding neural codes using random projections. Neurocomputing (2004)
Alexander Dimitrov, Tomás Gedeon, Brendan Mumey, Ross Snider, Albert E. Parker, John P. Miller
Derivation of Natural Stimulus Feature Set Using a Data-Driven Model. International Conference on Computational Science (2003)
Brendan Mumey, Brian W. Bailey, Bonnie Kirkpatrick, Algirdas J. Jesaitis, Thomas Angel, Edward A. Dratz
A New Method for Mapping Discontinuous Antibody Epitopes to Reveal Structural Features of Proteins. J. Comput. Biol. 10 (3/4) (2003)
Brendan Mumey, Thomas Angel, Bonnie Kirkpatrick, Brian W. Bailey, P. Hargrave, Algirdas J. Jesaitis, Edward A. Dratz
Mapping Discontinuous Antibody Epitopes to Reveal Protein Structure and Changes in Structure Related to Function. CSB (2003)
Brendan Mumey, Brian W. Bailey, Edward A. Dratz
Revealing protein structures: a new method for mapping antibody epitopes. RECOMB (2002)
Brendan Mumey
Probe location in the presence of errors: a problem from DNA mapping. Discret. Appl. Math. 104 (1-3) (2000)
Brendan Mumey
A Fast Heuristic Algorithm for a Probe Mapping Problem. ISMB (1997)
Brendan Mumey
A Model and Method for Detecting Errors in Data Sets. German Conference on Bioinformatics (1997)
Maria M. Klawe, Brendan Mumey
Upper and Lower Bounds on Constructing Alphabetic Binary Trees. SIAM J. Discret. Math. 8 (4) (1995)
Brendan Mumey
Finding friends-of-friends clusters quickly. Parallel Algorithms (1994)
Maria M. Klawe, Brendan Mumey
Upper and Lower Bounds on Constructing Alphabetic Binary Trees. SODA (1993)