ISMB

Keyphrases

Publications

2008

Kenneth McLeod, Albert Burger
Towards the use of argumentation in bioinformatics: a gene expression case study. ISMB (2008)
Mukul S. Bansal, Oliver Eulenstein
The multiple gene duplication problem revisited. ISMB (2008)
Alfonso Valencia, Ildefonso Cases
Editorial. ISMB (2008)
Ivelin Georgiev, Daniel A. Keedy, Jane S. Richardson, David C. Richardson, Bruce Randall Donald
Algorithm for backrub motions in protein design. ISMB (2008)
Yiqun Cao, Tao Jiang, Thomas Girke
A maximum common substructure-based algorithm for searching and predicting drug-like compounds. ISMB (2008)
Iman Hajirasouliha, Fereydoun Hormozdiari, Süleyman Cenk Sahinalp, Inanç Birol
Optimal pooling for genome re-sequencing with ultra-high-throughput short-read technologies. ISMB (2008)
Yu Lin, Bernard M. E. Moret
Estimating true evolutionary distances under the DCJ model. ISMB (2008)
Jun Liu, Sanjay Ranka, Tamer Kahveci
Classification and feature selection algorithms for multi-class CGH data. ISMB (2008)
Menachem Fromer, Chen Yanover
A computational framework to empower probabilistic protein design. ISMB (2008)
Fei Xiong, Gopal Pandurangan, Chris Bailey-Kellogg
Contact replacement for NMR resonance assignment. ISMB (2008)
Simon Wong, Mark A. Ragan
MACHOS: Markov clusters of homologous subsequences. ISMB (2008)
Chun-Nan Hsu, Yu-Ming Chang, Cheng-Ju Kuo, Yu-Shi Lin, Han-Shen Huang, I-Fang Chung
Integrating high dimensional bi-directional parsing models for gene mention tagging. ISMB (2008)
Nuno Bandeira, Jesper V. Olsen, Matthias Mann, Pavel A. Pevzner
Multi-spectra peptide sequencing and its applications to multistage mass spectrometry. ISMB (2008)
Franck Rapaport, Emmanuel Barillot, Jean-Philippe Vert
Classification of arrayCGH data using fused SVM. ISMB (2008)
Arzucan Özgür, Thuy Vu, Günes Erkan, Dragomir R. Radev
Identifying gene-disease associations using centrality on a literature mined gene-interaction network. ISMB (2008)
Curtis Huttenhower, Olga G. Troyanskaya
Assessing the functional structure of genomic data. ISMB (2008)
Sören Sonnenburg, Alexander Zien, Petra Philips, Gunnar Rätsch
POIMs: positional oligomer importance matrices - understanding support vector machine-based signal detectors. ISMB (2008)
Sean McIlwain, David Page, Edward L. Huttlin, Michael R. Sussman
Matching isotopic distributions from metabolically labeled samples. ISMB (2008)
Shuai Cheng Li, Dongbo Bu, Xin Gao, Jinbo Xu, Ming Li
Designing succinct structural alphabets. ISMB (2008)
Pierre Baldi, Ryan W. Benz
BLASTing small molecules - statistics and extreme statistics of chemical similarity scores. ISMB (2008)
Roman Klinger, Corinna Kolárik, Juliane Fluck, Martin Hofmann-Apitius, Christoph M. Friedrich
Detection of IUPAC and IUPAC-like chemical names. ISMB (2008)
Tien-ho Lin, Naftali Kaminski, Ziv Bar-Joseph
Alignment and classification of time series gene expression in clinical studies. ISMB (2008)
Cuong Than, R. Sugino, Hideki Innan, Luay Nakhleh
Efficient inference of bacterial strain trees from genome-scale multilocus data. ISMB (2008)
Ivan G. Costa, Stefan Roepcke, Christoph Hafemeister, Alexander Schliep
Inferring differentiation pathways from gene expression. ISMB (2008)
Larisa N. Soldatova, Wayne Aubrey, Ross D. King, Amanda Clare
The EXACT description of biomedical protocols. ISMB (2008)
Noga Alon, Phuong Dao, Iman Hajirasouliha, Fereydoun Hormozdiari, Süleyman Cenk Sahinalp
Biomolecular network motif counting and discovery by color coding. ISMB (2008)
Theo A. Knijnenburg, Lodewyk F. A. Wessels, Marcel J. T. Reinders
Combinatorial influence of environmental parameters on transcription factor activity. ISMB (2008)
Yanjun Qi, Fernanda Balem, Christos Faloutsos, Judith Klein-Seetharaman, Ziv Bar-Joseph
Protein complex identification by supervised graph local clustering. ISMB (2008)
Marcus T. Dittrich, Gunnar W. Klau, Andreas Rosenwald, Thomas Dandekar, Tobias Müller
Identifying functional modules in protein-protein interaction networks: an integrated exact approach. ISMB (2008)
Ludovica Montanucci, Piero Fariselli, Pier Luigi Martelli, Rita Casadio
Predicting protein thermostability changes from sequence upon multiple mutations. ISMB (2008)
Ashley Vaughan, Sum-Ying Chiu, Gowthaman Ramasamy, Ling Li, Malcolm J. Gardner, Alice S. Tarun, Stefan H. I. Kappe, Xinxia Peng
genome annotation through comparative analysis. ISMB (2008)
Thomas Abeel, Yvan Saeys, Pierre Rouzé, Yves Van de Peer
ProSOM: core promoter prediction based on unsupervised clustering of DNA physical profiles. ISMB (2008)
Yaniv Loewenstein, Elon Portugaly, Menachem Fromer, Michal Linial
Efficient algorithms for accurate hierarchical clustering of huge datasets: tackling the entire protein space. ISMB (2008)
Michal Rosen-Zvi, André Altmann, Mattia C. F. Prosperi, Ehud Aharoni, Hani Neuvirth, Anders Sönnerborg, Eugen Schülter, Daniel Struck, Yardena Peres, Francesca Incardona, Rolf Kaiser, Maurizio Zazzi, Thomas Lengauer
Selecting anti-HIV therapies based on a variety of genomic and clinical factors. ISMB (2008)
Joshua Wing Kei Ho, Maurizio Stefani, Cristobal G. dos Remedios, Michael A. Charleston
Differential variability analysis of gene expression and its application to human diseases. ISMB (2008)
Seunghak Lee, Elango Cheran, Michael Brudno
A robust framework for detecting structural variations in a genome. ISMB (2008)
Chuong B. Do, Chuan-Sheng Foo, Serafim Batzoglou
A max-margin model for efficient simultaneous alignment and folding of RNA sequences. ISMB (2008)
Frédéric Lemoine, Bernard Labedan, Christine Froidevaux
GenoQuery: a new querying module for functional annotation in a genomic warehouse. ISMB (2008)
Chunfang Zheng, Qian Zhu, Zaky Adam, David Sankoff
Guided genome halving: hardness, heuristics and the history of the Hemiascomycetes. ISMB (2008)
Lucas D. Ward, Harmen J. Bussemaker
Predicting functional transcription factor binding through alignment-free and affinity-based analysis of orthologous promoter sequences. ISMB (2008)
Yoshihiro Yamanishi, Michihiro Araki, Alex Gutteridge, Wataru Honda, Minoru Kanehisa
Prediction of drug-target interaction networks from the integration of chemical and genomic spaces. ISMB (2008)
Stefan Schulz, Holger Stenzhorn, Martin Boeker
The ontology of biological taxa. ISMB (2008)
Yuan Wang, Xiaobo Zhou, Honghui Wang, King C. Li, Lixiu Yao, Stephen T. C. Wong
Reversible jump MCMC approach for peak identification for stroke SELDI mass spectrometry using mixture model. ISMB (2008)
ISMB 2008 Organization. ISMB (2008)
Aaron A. Klammer, Sheila M. Reynolds, Jeff A. Bilmes, Michael J. MacCoss, William Stafford Noble
Modeling peptide fragmentation with dynamic Bayesian networks for peptide identification. ISMB (2008)
Thomas J. Lee, Ian T. Paulsen, Peter D. Karp
Annotation-based inference of transporter function. ISMB (2008)
Yunpen Xu, Xuefeng Zhou, Weixiong Zhang
MicroRNA prediction with a novel ranking algorithm based on random walks. ISMB (2008)
Minzhu Xie, Jianxin Wang, Jianer Chen
A model of higher accuracy for the individual haplotyping problem based on weighted SNP fragments and genotype with errors. ISMB (2008)
Aleksandar Stojmirovic, E. Michael Gertz, Stephen F. Altschul, Yi-Kuo Yu
The effectiveness of position- and composition-specific gap costs for protein similarity searches. ISMB (2008)
Moran Yassour, Tommy Kaplan, Ariel Jaimovich, Nir Friedman
Nucleosome positioning from tiling microarray data. ISMB (2008)