Tomás Gedeon

Publication Activity (10 Years)

Years Active: 1999-2023
Publications (10 Years): 21

Top Topics

Monotone Boolean Functions

Regulatory Networks

Parameter Space

Top Venues

SIAM J. Appl. Dyn. Syst.

PLoS Comput. Biol.

Publications

Tomás Gedeon, Breschine Cummins
Oscillator death in coupled biochemical oscillators. Math. Control. Signals Syst. 35 (4) (2023)
Robin Belton, Bree Cummins, Brittany Terese Fasy, Tomás Gedeon
Extremal Event Graphs: A (Stable) Tool for Analyzing Noisy Time Series Data. CoRR (2022)
Bree Cummins, Marcio Gameiro, Tomás Gedeon, Shane Kepley, Konstantin Mischaikow, Lun Zhang
Extending Combinatorial Regulatory Network Modeling to Include Activity Control and Decay Modulation. SIAM J. Appl. Dyn. Syst. 21 (3) (2022)
Albert E. Parker, Tomás Gedeon, Alexander Dimitrov
The Lack of Convexity of the Relevance-Compression Function. CoRR (2022)
Peter Crawford-Kahrl, Bree Cummins, Tomás Gedeon
Joint realizability of monotone Boolean functions. Theor. Comput. Sci. 922 (2022)
Breschine Cummins, Francis C. Motta, Robert C. Moseley, Anastasia Deckard, Sophia Campione, Marcio Gameiro, Tomás Gedeon, Konstantin Mischaikow, Steven B. Haase
Experimental guidance for discovering genetic networks through hypothesis reduction on time series. PLoS Comput. Biol. 18 (10) (2022)
William D. Kalies, Tomás Gedeon, Hiroshi Kokubu, Konstantin Mischaikow, Hiroe Oka
Equilibria and their Stability in Networks with Steep Sigmoidal Nonlinearities. SIAM J. Appl. Dyn. Syst. 20 (4) (2021)
Marcio Gameiro, Tomás Gedeon, Shane Kepley, Konstantin Mischaikow
Rational design of complex phenotype via network models. PLoS Comput. Biol. 17 (7) (2021)
William Duncan, Tomás Gedeon
Stability and Bifurcations of Equilibria in Networks with Piecewise Linear Interactions. Int. J. Bifurc. Chaos 31 (11) (2021)
Tomás Gedeon, Lisa Davis, Katelyn Weber, Jennifer Thorenson
Trade-offs among transcription elongation rate, number, and duration of ubiquitous pauses on highly transcribed bacterial genes. J. Bioinform. Comput. Biol. 19 (5) (2021)
Ying Xin, Bree Cummins, Tomás Gedeon
Multistability in the epithelial-mesenchymal transition network. BMC Bioinform. 21 (1) (2020)
Danielle Ciesielski, Stephanie McCalla, Tomás Gedeon
Analysis of Dynamics of a Biphasic Isothermal DNA Amplification Reaction. SIAM J. Appl. Math. 80 (5) (2020)
Tomás Gedeon
Multi-parameter exploration of dynamics of regulatory networks. Biosyst. 190 (2020)
Peter Crawford-Kahrl, Bree Cummins, Tomás Gedeon
Comparison of Combinatorial Signatures of Global Network Dynamics Generated by Two Classes of ODE Models. SIAM J. Appl. Dyn. Syst. 18 (1) (2019)
Robert Nerem, Peter Crawford-Kahrl, Bree Cummins, Tomás Gedeon
A poset metric from the directed maximum common edge subgraph. CoRR (2019)
Tomás Gedeon, Bree Cummins, Shaun Harker, Konstantin Mischaikow
Identifying robust hysteresis in networks. PLoS Comput. Biol. 14 (4) (2018)
Bree Cummins, Tomás Gedeon, Shaun Harker, Konstantin Mischaikow
Model Rejection and Parameter Reduction via Time Series. SIAM J. Appl. Dyn. Syst. 17 (2) (2018)
Bree Cummins, Tomás Gedeon, Shaun Harker, Konstantin Mischaikow
Database of Dynamic Signatures Generated by Regulatory Networks (DSGRN). CMSB (2017)
Bree Cummins, Tomás Gedeon, Shaun Harker, Konstantin Mischaikow, Kafung Mok
Combinatorial Representation of Parameter Space for Switching Networks. SIAM J. Appl. Dyn. Syst. 15 (4) (2016)
Tamra Heberling, Lisa Davis, Jakub Gedeon, Charles Morgan, Tomás Gedeon
A Mechanistic Model for Cooperative Behavior of Co-transcribing RNA Polymerases. PLoS Comput. Biol. 12 (8) (2016)
Bree Cummins, Tomás Gedeon, Kelly Spendlove
On the Efficacy of State Space Reconstruction Methods in Determining Causality. SIAM J. Appl. Dyn. Syst. 14 (1) (2015)
Jesse Berwald, Tomás Gedeon, John W. Sheppard
Using machine learning to predict catastrophes in dynamical systems. J. Comput. Appl. Math. 236 (9) (2012)
Tomás Gedeon, Albert E. Parker, Alexander G. Dimitrov
The Mathematical Structure of Information Bottleneck Methods. Entropy 14 (3) (2012)
Zane N. Aldworth, Alexander G. Dimitrov, Graham I. Cummins, Tomás Gedeon, John P. Miller
Temporal Encoding in a Nervous System. PLoS Comput. Biol. 7 (5) (2011)
Alden H. Wright, Tomás Gedeon, J. Neal Richter
On the movement of vertex fixed points in the simple GA. FOGA (2011)
Jesse Berwald, Tomás Gedeon, Konstantin Mischaikow
Modeling Complexity of Physiological Time Series In-Silico. BIOSIGNALS (2010)
Mark Campanelli, Tomás Gedeon
Somitogenesis Clock-Wave Initiation Requires Differential Decay and Multiple Binding Sites for Clock Protein. PLoS Comput. Biol. 6 (4) (2010)
Albert E. Parker, Alexander G. Dimitrov, Tomás Gedeon
Symmetry breaking in soft clustering decoding of neural codes. IEEE Trans. Inf. Theory 56 (2) (2010)
Tomás Gedeon
Oscillations in Monotone Systems with a Negative Feedback. SIAM J. Appl. Dyn. Syst. 9 (1) (2010)
Christina Hayes, Tomás Gedeon
Hyperbolicity of the fixed point set for the simple genetic algorithm. Theor. Comput. Sci. 411 (25) (2010)
Tomás Gedeon, Albert E. Parker, Collette Campion, Zane N. Aldworth
Annealing and the normalized N-cut. Pattern Recognit. 41 (2) (2008)
S. R. Harker, Curtis R. Vogel, Tomás Gedeon
Analysis of Constrained Optimization Variants of the Map-Seeking Circuit Algorithm. J. Math. Imaging Vis. 29 (1) (2007)
Tomás Gedeon, Christina Hayes, Richard Swanson
Genericity of the Fixed Point Set for the Infinite Population Genetic Algorithm. FOGA (2007)
Tomás Gedeon, David Arathorn
Convergence of Map Seeking Circuits. J. Math. Imaging Vis. 29 (2-3) (2007)
Alexander G. Dimitrov, Tomás Gedeon
Effects of stimulus transformations on estimates of sensory neuron selectivity. J. Comput. Neurosci. 20 (3) (2006)
Christina Hayes, Tomás Gedeon
Hyperbolic fixed points are typical in the space of mixing operators for the infinite population genetic algorithm. GECCO Workshops (2005)
Brendan Mumey, Aditi Sarkar, Tomás Gedeon, Alexander Dimitrov, John P. Miller
Finding neural codes using random projections. Neurocomputing (2004)
Alexander Dimitrov, Tomás Gedeon, Brendan Mumey, Ross Snider, Albert E. Parker, John P. Miller
Derivation of Natural Stimulus Feature Set Using a Data-Driven Model. International Conference on Computational Science (2003)
Albert E. Parker, Tomás Gedeon, Alexander Dimitrov
Annealing and the Rate Distortion Problem. NIPS (2002)
Alexander Dimitrov, John P. Miller, Zane N. Aldworth, Tomás Gedeon
Non-uniform quantization of neural spike sequences through an information distortion measure. Neurocomputing (2001)
Tomás Gedeon
Additive neural networks and periodic patterns. Neural Networks 12 (4-5) (1999)