Bree Cummins

Publication Activity (10 Years)

Years Active: 2010-2022
Publications (10 Years): 12

Top Topics

Monotone Boolean Functions

Regulatory Networks

Biological Processes

Top Venues

SIAM J. Appl. Dyn. Syst.

Publications

Francis C. Motta, Robert C. Moseley, Bree Cummins, Anastasia Deckard, Steven B. Haase
Conservation of dynamic characteristics of transcriptional regulatory elements in periodic biological processes. BMC Bioinform. 23 (1) (2022)
Robin Belton, Bree Cummins, Brittany Terese Fasy, Tomás Gedeon
Extremal Event Graphs: A (Stable) Tool for Analyzing Noisy Time Series Data. CoRR (2022)
Bree Cummins, Marcio Gameiro, Tomás Gedeon, Shane Kepley, Konstantin Mischaikow, Lun Zhang
Extending Combinatorial Regulatory Network Modeling to Include Activity Control and Decay Modulation. SIAM J. Appl. Dyn. Syst. 21 (3) (2022)
Peter Crawford-Kahrl, Bree Cummins, Tomás Gedeon
Joint realizability of monotone Boolean functions. Theor. Comput. Sci. 922 (2022)
Ying Xin, Bree Cummins, Tomás Gedeon
Multistability in the epithelial-mesenchymal transition network. BMC Bioinform. 21 (1) (2020)
Peter Crawford-Kahrl, Bree Cummins, Tomás Gedeon
Comparison of Combinatorial Signatures of Global Network Dynamics Generated by Two Classes of ODE Models. SIAM J. Appl. Dyn. Syst. 18 (1) (2019)
Robert Nerem, Peter Crawford-Kahrl, Bree Cummins, Tomás Gedeon
A poset metric from the directed maximum common edge subgraph. CoRR (2019)
Tomás Gedeon, Bree Cummins, Shaun Harker, Konstantin Mischaikow
Identifying robust hysteresis in networks. PLoS Comput. Biol. 14 (4) (2018)
Zane Huttinga, Bree Cummins, Tomas Geadon
Combinatorial Dynamics for Regulatory Networks. MLCSB (2018)
Bree Cummins, Tomás Gedeon, Shaun Harker, Konstantin Mischaikow
Model Rejection and Parameter Reduction via Time Series. SIAM J. Appl. Dyn. Syst. 17 (2) (2018)
Bree Cummins, Tomás Gedeon, Shaun Harker, Konstantin Mischaikow
Database of Dynamic Signatures Generated by Regulatory Networks (DSGRN). CMSB (2017)
Bree Cummins, Tomás Gedeon, Shaun Harker, Konstantin Mischaikow, Kafung Mok
Combinatorial Representation of Parameter Space for Switching Networks. SIAM J. Appl. Dyn. Syst. 15 (4) (2016)
Bree Cummins, Tomás Gedeon, Kelly Spendlove
On the Efficacy of State Space Reconstruction Methods in Determining Causality. SIAM J. Appl. Dyn. Syst. 14 (1) (2015)
Bree Cummins, Ricardo Cortez, Ivo M. Foppa, Justin Walbeck, James Mac Hyman
A Spatial Model of Mosquito Host-Seeking Behavior. PLoS Comput. Biol. 8 (5) (2012)
Ricardo Cortez, Bree Cummins, Karin Leiderman, Douglas Varela
Computation of three-dimensional Brinkman flows using regularized methods. J. Comput. Phys. 229 (20) (2010)