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CMSB
2003
2009
2017
2023
2003
2023
Keyphrases
Publications
2023
Lorenzo Contento
,
Paul Stapor
,
Daniel Weindl
,
Jan Hasenauer
A More Expressive Spline Representation for SBML Models Improves Code Generation Performance in AMICI.
CMSB
(2023)
Mathieu Hemery
,
François Fages
On Estimating Derivatives of Input Signals in Biochemistry.
CMSB
(2023)
Alexander Leguizamon-Robayo
,
Antonio Jiménez-Pastor
,
Mirco Tribastone
,
Max Tschaikowski
,
Andrea Vandin
Approximate Constrained Lumping of Polynomial Differential Equations.
CMSB
(2023)
Takehide Soh
,
Morgan Magnin
,
Daniel Le Berre
,
Mutsunori Banbara
,
Naoyuki Tamura
SAF: SAT-Based Attractor Finder in Asynchronous Automata Networks.
CMSB
(2023)
Pelin Gundogdu
,
Miriam Payá-Milans
,
Inmaculada Alamo-Alvarez
,
Isabel A. Nepomuceno-Chamorro
,
Joaquín Dopazo
,
Carlos Loucera
Cell-Level Pathway Scoring Comparison with a Biologically Constrained Variational Autoencoder.
CMSB
(2023)
Joachim Niehren
,
Cédric Lhoussaine
,
Athénaïs Vaginay
Core SBML and Its Formal Semantics.
CMSB
(2023)
Lancelot Wathieu
,
Gus Henry Smith
,
Luis Ceze
,
Chris Thachuk
Fridge Compiler: Optimal Circuits from Molecular Inventories.
CMSB
(2023)
Iryna Zabaikina
,
Pavol Bokes
,
Abhyudai Singh
Joint Distribution of Protein Concentration and Cell Volume Coupled by Feedback in Dilution.
CMSB
(2023)
Elisabeth Remy
,
Paul Ruet
Average Sensitivity of Nested Canalizing Multivalued Functions.
CMSB
(2023)
Lilly Maria Treml
3D Hybrid Cellular Automata for Cardiac Electrophysiology: A Concept Study.
CMSB
(2023)
Elisa Tonello
,
Loïc Paulevé
Attractor Identification in Asynchronous Boolean Dynamics with Network Reduction.
CMSB
(2023)
Sara Riva
,
Jean-Marie Lagniez
,
Gustavo Magaña López
,
Loïc Paulevé
Tackling Universal Properties of Minimal Trap Spaces of Boolean Networks.
CMSB
(2023)
Paolo Ballarini
,
Mahmoud Bentriou
,
Paul-Henry Cournède
A Formal Approach for Tuning Stochastic Oscillators.
CMSB
(2023)
Honglu Sun
,
Maxime Folschette
,
Morgan Magnin
Condition for Periodic Attractor in 4-Dimensional Repressilators.
CMSB
(2023)
Nikola Benes
,
Lubos Brim
,
Samuel Pastva
,
David Safránek
,
Eva Smijáková
Phenotype Control of Partially Specified Boolean Networks.
CMSB
(2023)
Rocco De Nicola
,
Luca Di Stefano
,
Omar Inverso
,
Serenella Valiani
Intuitive Modelling and Formal Analysis of Collective Behaviour in Foraging Ants.
CMSB
(2023)
Ulysse Herbach
Harissa: Stochastic Simulation and Inference of Gene Regulatory Networks Based on Transcriptional Bursting.
CMSB
(2023)
volume 14137, 2023
Computational Methods in Systems Biology - 21st International Conference, CMSB 2023, Luxembourg City, Luxembourg, September 13-15, 2023, Proceedings
CMSB
14137 (2023)
2022
Martin Helfrich
,
Milan Ceska
,
Jan Kretínský
,
Stefan Marticek
Abstraction-Based Segmental Simulation of Chemical Reaction Networks.
CMSB
(2022)
Honglu Sun
,
Maxime Folschette
,
Morgan Magnin
Limit Cycle Analysis of a Class of Hybrid Gene Regulatory Networks.
CMSB
(2022)
Clémence Réda
,
Andrée Delahaye-Duriez
Prioritization of Candidate Genes Through Boolean Networks.
CMSB
(2022)
Ville Laitinen
,
Leo Lahti
Probabilistic Multivariate Early Warning Signals.
CMSB
(2022)
Van-Giang Trinh
,
Belaid Benhamou
,
Kunihiko Hiraishi
,
Sylvain Soliman
Minimal Trap Spaces of Logical Models are Maximal Siphons of Their Petri Net Encoding.
CMSB
(2022)
Samuel Pastva
Variable Stabilisation in Boolean Monotonic Model Pools.
CMSB
(2022)
Théo Roncalli
,
Loïc Paulevé
Variable-Depth Simulation of Most Permissive Boolean Networks.
CMSB
(2022)
Georgios Argyris
,
Alberto Lluch-Lafuente
,
Mirco Tribastone
,
Max Tschaikowski
,
Andrea Vandin
An Extension of ERODE to Reduce Boolean Networks By Backward Boolean Equivalence.
CMSB
(2022)
Svitlana Braichenko
,
Ramon Grima
,
Guido Sanguinetti
Bayesian Learning of Effective Chemical Master Equations in Crowded Intracellular Conditions.
CMSB
(2022)
Eléa Thibault Greugny
,
Georgios N. Stamatas
,
François Fages
Stability Versus Meta-stability in a Skin Microbiome Model.
CMSB
(2022)
Mathieu Hemery
,
François Fages
Algebraic Biochemistry: A Framework for Analog Online Computation in Cells.
CMSB
(2022)
Antonio Jiménez-Pastor
,
Joshua Paul Jacob
,
Gleb Pogudin
Exact Linear Reduction for Rational Dynamical Systems.
CMSB
(2022)
Joachim Niehren
,
Athénaïs Vaginay
,
Cristian Versari
Abstract Simulation of Reaction Networks via Boolean Networks.
CMSB
(2022)
Fabricio Cravo
,
Matthias Függer
,
Thomas Nowak
,
Gayathri Prakash
MobsPy: A Meta-species Language for Chemical Reaction Networks.
CMSB
(2022)
Matej Troják
,
David Safránek
,
Branislav Brozmann
,
Lubos Brim
eBCSgen 2.0: Modelling and Analysis of Regulated Rule-Based Systems.
CMSB
(2022)
Aurélien Desoeuvres
,
Peter Szmolyan
,
Ovidiu Radulescu
Qualitative Dynamics of Chemical Reaction Networks: An Investigation Using Partial Tropical Equilibrations.
CMSB
(2022)
Hanna Josephine Wiederanders
,
Anne-Lena Moor
,
Christoph Zechner
Automated Generation of Conditional Moment Equations for Stochastic Reaction Networks.
CMSB
(2022)
volume 13447, 2022
Computational Methods in Systems Biology - 20th International Conference, CMSB 2022, Bucharest, Romania, September 14-16, 2022, Proceedings
CMSB
13447 (2022)
2021
Mathieu Hemery
,
François Fages
,
Sylvain Soliman
Compiling Elementary Mathematical Functions into Finite Chemical Reaction Networks via a Polynomialization Algorithm for ODEs.
CMSB
(2021)
Gleb Pogudin
,
Xingjian Zhang
Interpretable Exact Linear Reductions via Positivity.
CMSB
(2021)
David Doty
,
Eric E. Severson
Ppsim: A Software Package for Efficiently Simulating and Visualizing Population Protocols.
CMSB
(2021)
Misbah Razzaq
,
Louisa Goumidi
,
Maria-Jesus Iglesias
,
Gaëlle Munsch
,
Maria Bruzelius
,
Manal Ibrahim-Kosta
,
Lynn Butler
,
Jacob Odeberg
,
Pierre-Emmanuel Morange
,
David Alexandre Tregouet
Explainable Artificial Neural Network for Recurrent Venous Thromboembolism Based on Plasma Proteomics.
CMSB
(2021)
Candan Çelik
,
Pavol Bokes
,
Abhyudai Singh
Protein Noise and Distribution in a Two-Stage Gene-Expression Model Extended by an mRNA Inactivation Loop.
CMSB
(2021)
Axel Theorell
,
Jörg Stelling
Microbial Community Decision Making Models in Batch and Chemostat Cultures.
CMSB
(2021)
Laetitia Gibart
,
Hélène Collavizza
,
Jean-Paul Comet
Greening R. Thomas' Framework with Environment Variables: A Divide and Conquer Approach.
CMSB
(2021)
Tom Warnke
,
Adelinde M. Uhrmacher
Nonlinear Pattern Matching in Rule-Based Modeling Languages.
CMSB
(2021)
Nikola Benes
,
Lubos Brim
,
Samuel Pastva
,
David Safránek
Aeon 2021: Bifurcation Decision Trees in Boolean Networks.
CMSB
(2021)
Ilia Ilmer
,
Alexey Ovchinnikov
,
Gleb Pogudin
Web-Based Structural Identifiability Analyzer.
CMSB
(2021)
Ansuman Biswas
,
Ashutosh Gupta
,
Meghana Missula
,
Mukund Thattai
Automated Inference of Production Rules for Glycans.
CMSB
(2021)
Gaurav Saxena
,
Miguel Ponce de Leon
,
Arnau Montagud
,
David Vicente Dorca
,
Alfonso Valencia
BioFVM-X: An MPI+OpenMP 3-D Simulator for Biological Systems.
CMSB
(2021)
Mathilde Sautreuil
,
Sarah Lemler
,
Paul-Henry Cournède
Neural Networks to Predict Survival from RNA-seq Data in Oncology.
CMSB
(2021)
volume 12881, 2021
Computational Methods in Systems Biology - 19th International Conference, CMSB 2021, Bordeaux, France, September 22-24, 2021, Proceedings
CMSB
12881 (2021)