Paul Stapor

Publication Activity (10 Years)

Years Active: 2018-2023
Publications (10 Years): 6

Top Topics

Sensitivity Analysis

Code Generation

Parameters Estimation

Top Venues

PLoS Comput. Biol.

Publications

Polina A. Lakrisenko, Paul Stapor, Stephan Grein, Lukasz Paszkowski, Dilan Pathirana, Fabian Fröhlich, Glenn Terje Lines, Daniel Weindl, Jan Hasenauer
Efficient computation of adjoint sensitivities at steady-state in ODE models of biochemical reaction networks. PLoS Comput. Biol. 19 (1) (2023)
Lorenzo Contento, Paul Stapor, Daniel Weindl, Jan Hasenauer
A More Expressive Spline Representation for SBML Models Improves Code Generation Performance in AMICI. CMSB (2023)
Yannik Schälte, Fabian Fröhlich, Paul J. Jost, Jakob Vanhoefer, Dilan Pathirana, Paul Stapor, Polina A. Lakrisenko, Dantong Wang, Elba Raimúndez-Álvarez, Simon Merkt, Leonard Schmiester, Philipp Städter, Stephan Grein, Erika Dudkin, Domagoj Doresic, Daniel Weindl, Jan Hasenauer
pyPESTO: a modular and scalable tool for parameter estimation for dynamic models. Bioinform. 39 (11) (2023)
Fabian Fröhlich, Daniel Weindl, Yannik Schälte, Dilan Pathirana, Lukasz Paszkowski, Glenn Terje Lines, Paul Stapor, Jan Hasenauer
AMICI: high-performance sensitivity analysis for large ordinary differential equation models. Bioinform. 37 (20) (2021)
Paul Stapor, Fabian Fröhlich, Jan Hasenauer
Optimization and profile calculation of ODE models using second order adjoint sensitivity analysis. Bioinform. 34 (13) (2018)
Paul Stapor, Daniel Weindl, Benjamin Ballnus, Sabine Hug, Carolin Loos, Anna Fiedler, Sabrina Krause, Sabrina Hross, Fabian Fröhlich, Jan Hasenauer
PESTO: Parameter EStimation TOolbox. Bioinform. 34 (4) (2018)