Yannik Schälte

Publication Activity (10 Years)

Years Active: 2020-2023
Publications (10 Years): 10

Top Topics

Computational Models

Estimation Problems

Parameter Estimation

Top Venues

J. Open Source Softw.

PLoS Comput. Biol.

Publications

Emad Alamoudi, Yannik Schälte, Robert Müller, Jörn Starruß, Nils Bundgaard, Frederik Graw, Lutz Brusch, Jan Hasenauer
FitMultiCell: simulating and parameterizing computational models of multi-scale and multi-cellular processes. Bioinform. 39 (11) (2023)
Yannik Schälte, Fabian Fröhlich, Paul J. Jost, Jakob Vanhoefer, Dilan Pathirana, Paul Stapor, Polina A. Lakrisenko, Dantong Wang, Elba Raimúndez-Álvarez, Simon Merkt, Leonard Schmiester, Philipp Städter, Stephan Grein, Erika Dudkin, Domagoj Doresic, Daniel Weindl, Jan Hasenauer
pyPESTO: a modular and scalable tool for parameter estimation for dynamic models. Bioinform. 39 (11) (2023)
Stefan T. Radev, Marvin Schmitt, Lukas Schumacher, Lasse Elsemüller, Valentin Pratz, Yannik Schälte, Ullrich Köthe, Paul-Christian Bürkner
BayesFlow: Amortized Bayesian Workflows With Neural Networks. J. Open Source Softw. 8 (90) (2023)
Stefan T. Radev, Marvin Schmitt, Lukas Schumacher, Lasse Elsemüller, Valentin Pratz, Yannik Schälte, Ullrich Köthe, Paul-Christian Bürkner
BayesFlow: Amortized Bayesian Workflows With Neural Networks. CoRR (2023)
Yannik Schälte, Emmanuel Klinger, Emad Alamoudi, Jan Hasenauer
pyABC: Efficient and robust easy-to-use approximate Bayesian computation. J. Open Source Softw. 7 (74) (2022)
Fabian Fröhlich, Daniel Weindl, Yannik Schälte, Dilan Pathirana, Lukasz Paszkowski, Glenn Terje Lines, Paul Stapor, Jan Hasenauer
AMICI: high-performance sensitivity analysis for large ordinary differential equation models. Bioinform. 37 (20) (2021)
Leonard Schmiester, Yannik Schälte, Frank T. Bergmann, Tacio Camba, Erika Dudkin, Janine Egert, Fabian Fröhlich, Lara Fuhrmann, Adrian L. Hauber, Svenja Kemmer, Polina A. Lakrisenko, Carolin Loos, Simon Merkt, Wolfgang Müller, Dilan Pathirana, Elba Raimúndez-Álvarez, Lukas Refisch, Marcus Rosenblatt, Paul L. Stapor, Philipp Städter, Dantong Wang, Franz-Georg Wieland, Julio R. Banga, Jens Timmer, Alejandro F. Villaverde, Sven Sahle, Clemens Kreutz, Jan Hasenauer, Daniel Weindl
PEtab - Interoperable specification of parameter estimation problems in systems biology. PLoS Comput. Biol. 17 (1) (2021)
Jakob Vanhoefer, Marta R. A. Matos, Dilan Pathirana, Yannik Schälte, Jan Hasenauer
yaml2sbml: Human-readable and -writable specification of ODE models and their conversion to SBML. J. Open Source Softw. 6 (61) (2021)
Yannik Schälte, Jan Hasenauer
Efficient exact inference for dynamical systems with noisy measurements using sequential approximate Bayesian computation. Bioinform. 36 (Supplement-1) (2020)
Leonard Schmiester, Yannik Schälte, Fabian Fröhlich, Jan Hasenauer, Daniel Weindl
Efficient parameterization of large-scale dynamic models based on relative measurements. Bioinform. 36 (2) (2020)