Alejandro F. Villaverde

Publication Activity (10 Years)

Years Active: 2021-2023
Publications (10 Years): 12

Top Topics

Biological Systems

Systems Biology

Metabolic Pathways

Top Venues

PLoS Comput. Biol.

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Sandra Díaz-Seoane, Xabier Rey-Barreiro, Alejandro F. Villaverde
STRIKE-GOLDD 4.0: user-friendly, efficient analysis of structural identifiability and observability. Bioinform. 39 (1) (2023)
Gemma Massonis, Alejandro F. Villaverde, Julio R. Banga
Distilling identifiable and interpretable dynamic models from biological data. PLoS Comput. Biol. 19 (10) (2023)
Xabier Rey-Barreiro, Alejandro F. Villaverde
On the Origins and Rarity of Locally but Not Globally Identifiable Parameters in Biological Modeling. IEEE Access 11 (2023)
Sandra Díaz-Seoane, Antonio Barreiro Blas, Alejandro F. Villaverde
Controllability and accessibility analysis of nonlinear biosystems. Comput. Methods Programs Biomed. 242 (2023)
Gemma Massonis, Alejandro F. Villaverde, Julio R. Banga
Improving dynamic predictions with ensembles of observable models. Bioinform. 39 (1) (2023)
Alejandro F. Villaverde, Elba Raimúndez-Álvarez, Jan Hasenauer, Julio R. Banga
Assessment of Prediction Uncertainty Quantification Methods in Systems Biology. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (3) (2023)
Xabier Rey-Barreiro, Alejandro F. Villaverde
Benchmarking tools for a priori identifiability analysis. Bioinform. 39 (2) (2023)
Alejandro F. Villaverde
Symmetries in Dynamic Models of Biological Systems: Mathematical Foundations and Implications. Symmetry 14 (3) (2022)
Xabier Rey-Barreiro, Alejandro F. Villaverde
Benchmarking tools for a priori identifiability analysis. CoRR (2022)
Sandra Díaz-Seoane, Xabier Rey-Barreiro, Alejandro F. Villaverde
STRIKE-GOLDD 4.0: user-friendly, efficient analysis of structural identifiability and observability. CoRR (2022)
Alejandro F. Villaverde, Dilan Pathirana, Fabian Fröhlich, Jan Hasenauer, Julio R. Banga
A protocol for dynamic model calibration. Briefings Bioinform. 23 (1) (2022)
Leonard Schmiester, Yannik Schälte, Frank T. Bergmann, Tacio Camba, Erika Dudkin, Janine Egert, Fabian Fröhlich, Lara Fuhrmann, Adrian L. Hauber, Svenja Kemmer, Polina A. Lakrisenko, Carolin Loos, Simon Merkt, Wolfgang Müller, Dilan Pathirana, Elba Raimúndez-Álvarez, Lukas Refisch, Marcus Rosenblatt, Paul L. Stapor, Philipp Städter, Dantong Wang, Franz-Georg Wieland, Julio R. Banga, Jens Timmer, Alejandro F. Villaverde, Sven Sahle, Clemens Kreutz, Jan Hasenauer, Daniel Weindl
PEtab - Interoperable specification of parameter estimation problems in systems biology. PLoS Comput. Biol. 17 (1) (2021)