Jörg Stelling

Publication Activity (10 Years)

Years Active: 2003-2023
Publications (10 Years): 13

Top Topics

Parameter Identification

Systems Biology

Metabolic Networks

Model Selection

Top Venues

PLoS Comput. Biol.

Publications

Baptiste Turpin, Eline Y. Bijman, Hans-Michael Kaltenbach, Jörg Stelling
Efficient design of synthetic gene circuits under cell-to-cell variability. BMC Bioinform. 24 (1) (2023)
Axel Theorell, Jörg Stelling
Assumptions on decision making and environment can yield multiple steady states in microbial community models. BMC Bioinform. (1) (2023)
Axel Theorell, Jörg Stelling
Metabolic Networks, Microbial Consortia, and Analogies to Smart Grids. Proc. IEEE 110 (5) (2022)
Axel Theorell, Johann F. Jadebeck, Katharina Nöh, Jörg Stelling
PolyRound: polytope rounding for random sampling in metabolic networks. Bioinform. 38 (2) (2022)
Mustafa Hani Khammash, Jörg Stelling
Systems and Synthetic Biology. Proc. IEEE 110 (5) (2022)
Axel Theorell, Jörg Stelling
Microbial Community Decision Making Models in Batch and Chemostat Cultures. CMSB (2021)
Baptiste Turpin, Eline Y. Bijman, Hans-Michael Kaltenbach, Jörg Stelling
Population Design for Synthetic Gene Circuits. CMSB (2021)
Mattia G. Gollub, Hans-Michael Kaltenbach, Jörg Stelling
Probabilistic thermodynamic analysis of metabolic networks. Bioinform. 37 (18) (2021)
Mikolaj Rybinski, Simon Möller, Mikael Sunnåker, Claude Lormeau, Jörg Stelling
TopoFilter: a MATLAB package for mechanistic model identification in systems biology. BMC Bioinform. 21 (1) (2020)
Pencho Yordanov, Jörg Stelling, Irene Otero-Muras
BioSwitch: a tool for the detection of bistability and multi-steady state behaviour in signalling and gene regulatory networks. Bioinform. 36 (5) (2020)
Irene Otero-Muras, Pencho Yordanov, Jörg Stelling
Chemical Reaction Network Theory elucidates sources of multistability in interferon signaling. PLoS Comput. Biol. 13 (4) (2017)
Moritz Lang, Jörg Stelling
Modular Parameter Identification of Biomolecular Networks. SIAM J. Sci. Comput. 38 (6) (2016)
Ruben G. A. van Heck, Mathias Ganter, Vítor A. P. Martins dos Santos, Jörg Stelling
Efficient Reconstruction of Predictive Consensus Metabolic Network Models. PLoS Comput. Biol. 12 (8) (2016)
Claudia Schillings, Mikael Sunnåker, Jörg Stelling, Christoph Schwab
Efficient Characterization of Parametric Uncertainty of Complex (Bio)chemical Networks. PLoS Comput. Biol. 11 (8) (2015)
Mikael Sunnåker, Elías Zamora-Sillero, Adrián López García de Lomana, Florian Rudroff, Uwe Sauer, Jörg Stelling, Andreas Wagner
Topological augmentation to infer hidden processes in biological systems. Bioinform. 30 (2) (2014)
Irene Otero-Muras, Pencho Yordanov, Jörg Stelling
A method for inverse bifurcation of biochemical switches: inferring parameters from dose response curves. BMC Syst. Biol. 8 (2014)
Sotiris Dimopoulos, Christian E. Mayer, Fabian Rudolf, Jörg Stelling
Accurate cell segmentation in microscopy images using membrane patterns. Bioinform. 30 (18) (2014)
Mario A. Marchisio, Moreno Colaiacovo, Ellis Whitehead, Jörg Stelling
Modular, rule-based modeling for the design of eukaryotic synthetic gene circuits. BMC Syst. Biol. 7 (2013)
Mathias Ganter, Thomas Bernard, Sébastien Moretti, Jörg Stelling, Marco Pagni
MetaNetX.org: a website and repository for accessing, analysing and manipulating metabolic networks. Bioinform. 29 (6) (2013)
Alberto Giovanni Busetto, Alain Hauser, Gabriel Krummenacher, Mikael Sunnåker, Sotiris Dimopoulos, Cheng Soon Ong, Jörg Stelling, Joachim M. Buhmann
Near-optimal experimental design for model selection in systems biology. Bioinform. 29 (20) (2013)
Stefan J. Jol, Anne Kümmel, Marco Terzer, Jörg Stelling, Matthias Heinemann
System-Level Insights into Yeast Metabolism by Thermodynamic Analysis of Elementary Flux Modes. PLoS Comput. Biol. 8 (3) (2012)
Pedro Gonnet, Sotiris Dimopoulos, Lukas Widmer, Jörg Stelling
A specialized ODE integrator for the efficient computation of parameter sensitivities. BMC Syst. Biol. 6 (2012)
Hans-Michael Kaltenbach, Simona Constantinescu, Justin Feigelman, Jörg Stelling
Graph-Based Decomposition of Biochemical Reaction Networks into Monotone Subsystems. WABI (2011)
Elías Zamora-Sillero, Marc Hafner, Ariane Ibig, Jörg Stelling, Andreas Wagner
Efficient characterization of high-dimensional parameter spaces for systems biology. BMC Syst. Biol. 5 (2011)
Mario A. Marchisio, Jörg Stelling
Automatic Design of Digital Synthetic Gene Circuits. PLoS Comput. Biol. 7 (2) (2011)
Mario A. Marchisio, Jörg Stelling
Synthetic Gene Network Computational Design. ISCAS (2009)
Marco Terzer, Jörg Stelling
Parallel Extreme Ray and Pathway Computation. PPAM (2) (2009)
Dirk Müller, Jörg Stelling
Precise Regulation of Gene Expression Dynamics Favors Complex Promoter Architectures. PLoS Comput. Biol. 5 (1) (2009)
Mario A. Marchisio, Jörg Stelling
Computational design of synthetic gene circuits with composable parts. Bioinform. 24 (17) (2008)
Neda Bagheri, Jörg Stelling, Francis J. Doyle III
Circadian Phase Resetting via Single and Multiple Control Targets. PLoS Comput. Biol. 4 (7) (2008)
Marco Terzer, Jörg Stelling
Large-scale computation of elementary flux modes with bit pattern trees. Bioinform. 24 (19) (2008)
Neda Bagheri, Jörg Stelling, Francis J. Doyle III
Quantitative performance metrics for robustness in circadian rhythms. Bioinform. 23 (3) (2007)
Marco Terzer, Jörg Stelling
Elementary flux modes - state-of-the-art implementation and scope of application. BMC Syst. Biol. 1 (S-1) (2007)
Marco Terzer, Jörg Stelling
Accelerating the Computation of Elementary Modes Using Pattern Trees. WABI (2006)
Daniel E. Zak, Jörg Stelling, Francis J. Doyle III
Sensitivity analysis of oscillatory (bio)chemical systems. Comput. Chem. Eng. 29 (3) (2005)
Neda Bagheri, Jörg Stelling, Francis J. Doyle
Optimal phase-tracking of the nonlinear circadian oscillator. ACC (2005)
Steffen Klamt, Jörg Stelling, Martin Ginkel, Ernst Dieter Gilles
FluxAnalyzer: exploring structure, pathways, and flux distributions in metabolic networks on interactive flux maps. Bioinform. 19 (2) (2003)
Michael Hucka, Andrew Finney, Herbert M. Sauro, H. Bolouri, John C. Doyle, Hiroaki Kitano, Adam P. Arkin, Benjamin J. Bornstein, D. Bray, Athel Cornish-Bowden, Autumn A. Cuellar, Serge Dronov, Ernst Dieter Gilles, Martin Ginkel, Victoria Gor, Igor Goryanin, W. J. Hedley, T. Charles Hodgman, Jan-Hendrik S. Hofmeyr, Peter J. Hunter, Nick S. Juty, J. L. Kasberger, Andreas Kremling, Ursula Kummer, Nicolas Le Novère, Leslie M. Loew, D. Lucio, Pedro Mendes, E. Minch, Eric Mjolsness, Yoichi Nakayama, M. R. Nelson, Poul M. F. Nielsen, T. Sakurada, James C. Schaff, Bruce E. Shapiro, Thomas Simon Shimizu, Hugh D. Spence, Jörg Stelling, Koichi Takahashi, Masaru Tomita, J. Wagner, J. Wang
The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. Bioinform. 19 (4) (2003)
Stefan Schuster, Steffen Klamt, Jörg Stelling
Making predictions about robustness and flexibility from metabolic network structure. German Conference on Bioinformatics (2003)