Irene Otero-Muras

Publication Activity (10 Years)

Years Active: 2007-2024
Publications (10 Years): 11

Top Topics

Global Optimization

Chemical Reaction

Conservation Laws

Gene Regulatory

Top Venues

BMC Syst. Biol.

Publications

Mihály A. Vághy, Irene Otero-Muras, Gábor Szederkényi
Analysis and Control of Gene Regulation Network Models Using Kinetic Semi-Discretization. ECC (2024)
Carlos Sequeiros, Irene Otero-Muras, Carlos Vázquez, Julio R. Banga
Global Optimization Approach for Parameter Estimation in Stochastic Dynamic Models of Biosystems. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (3) (2023)
Carlos Sequeiros, Manuel Pájaro, Carlos Vázquez, Julio R. Banga, Irene Otero-Muras
IDESS: a toolbox for identification and automated design of stochastic gene circuits. Bioinform. 39 (10) (2023)
Manuel Pájaro, Antonio A. Alonso, Irene Otero-Muras
Chemical Master Equation model to predict the COVID-19 epidemic spread. XoveTIC (2022)
Brandon Reyes, Irene Otero-Muras, Vladislav A. Petyuk
A numerical approach for detecting switch-like bistability in mass action chemical reaction networks with conservation laws. BMC Bioinform. 23 (1) (2022)
Brandon Reyes, Irene Otero-Muras, Michael T. Shuen, Alexandre M. Tartakovsky, Vladislav A. Petyuk
CRNT4SBML: a Python package for the detection of bistability in biochemical reaction networks. Bioinform. 36 (12) (2020)
Pencho Yordanov, Jörg Stelling, Irene Otero-Muras
BioSwitch: a tool for the detection of bistability and multi-steady state behaviour in signalling and gene regulatory networks. Bioinform. 36 (5) (2020)
Antonio A. Alonso, Irene Otero-Muras, Manuel Pájaro
Routes to Multiple Equilibria for Mass-Action Kinetic Systems. Complex. 2018 (2018)
Manuel Pájaro, Irene Otero-Muras, Carlos Vázquez, Antonio A. Alonso
SELANSI: a toolbox for simulation of stochastic gene regulatory networks. Bioinform. 34 (5) (2018)
Irene Otero-Muras, Pencho Yordanov, Jörg Stelling
Chemical Reaction Network Theory elucidates sources of multistability in interferon signaling. PLoS Comput. Biol. 13 (4) (2017)
Irene Otero-Muras, David Henriques, Julio R. Banga
SYNBADm: a tool for optimization-based automated design of synthetic gene circuits. Bioinform. 32 (21) (2016)
Irene Otero-Muras, Julio R. Banga
Optimization Based Design of Synthetic Oscillators from Standard Biological Parts. CMSB (2014)
Irene Otero-Muras, Pencho Yordanov, Jörg Stelling
A method for inverse bifurcation of biochemical switches: inferring parameters from dose response curves. BMC Syst. Biol. 8 (2014)
Irene Otero-Muras, Julio R. Banga
Multicriteria global optimization for biocircuit design. BMC Syst. Biol. 8 (2014)
Irene Otero-Muras, Amaya Franco-Uría, Antonio A. Alonso, Eva Balsa-Canto
Dynamic multi-compartmental modelling of metal bioaccumulation in fish: Identifiability implications. Environ. Model. Softw. 25 (3) (2010)
Irene Otero-Muras, Gábor Szederkényi, Antonio A. Alonso, Katalin M. Hangos
Local dissipative Hamiltonian description of reversible reaction networks. Syst. Control. Lett. 57 (7) (2008)
Irene Otero-Muras, Gábor Szederkényi, Katalin M. Hangos, Antonio A. Alonso
Dynamic analysis and control of biochemical reaction networks. Math. Comput. Simul. 79 (4) (2008)
Luis T. Antelo, Irene Otero-Muras, Julio R. Banga, Antonio A. Alonso
A systematic approach to plant-wide control based on thermodynamics. Comput. Chem. Eng. 31 (5-6) (2007)