Bruce E. Shapiro

Publication Activity (10 Years)

Years Active: 2001-2016
Publications (10 Years): 1

Top Topics

Modelling Language

Formal Semantics

Adaptive Learning

Top Venues

Publications

Bruce E. Shapiro, Eric Mjolsness
Pycellerator: an arrow-based reaction-like modelling language for biological simulations. Bioinform. 32 (4) (2016)
Nicolas Le Novère, Benjamin J. Bornstein, Alexander Broicher, Mélanie Courtot, Marco Donizelli, Harish Dharuri, Lu Li, Herbert M. Sauro, Maria J. Schilstra, Bruce E. Shapiro, Jacky L. Snoep, Michael Hucka
BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems. Nucleic Acids Res. 34 (Database-Issue) (2006)
Tarek S. Najdi, Chin-Rang Yang, Bruce E. Shapiro, G. Wesley Hatfield, Eric Mjolsness
Application of a Generalized Mwc Model for the Mathematical Simulation of Metabolic Pathways Regulated by Allosteric Enzymes. J. Bioinform. Comput. Biol. 4 (2) (2006)
Chin-Rang Yang, Bruce E. Shapiro, Eric Mjolsness, G. Wesley Hatfield
An enzyme mechanism language for the mathematical modeling of metabolic pathways. Bioinform. 21 (6) (2005)
Henrik Jönsson, Marcus Heisler, G. Venugopala Reddy, Vikas Agrawal, Victoria Gor, Bruce E. Shapiro, Eric Mjolsness, Elliot M. Meyerowitz
Modeling the organization of the WUSCHEL expression domain in the shoot apical meristem. ISMB (Supplement of Bioinformatics) (2005)
Tarek S. Najdi, Chin-Rang Yang, Bruce E. Shapiro, G. Wesley Hatfield, Eric Mjolsness
Application of a Generalized MWC Model for the Mathematical Simulation of Metabolic Pathways Regulated by Allosteric Enzymes. CSB (2005)
Bruce E. Shapiro, Michael Hucka, Andrew Finney, John Doyle
MathSBML: a package for manipulating SBML-based biological models. Bioinform. 20 (16) (2004)
Michael Hucka, Andrew Finney, Herbert M. Sauro, H. Bolouri, John C. Doyle, Hiroaki Kitano, Adam P. Arkin, Benjamin J. Bornstein, D. Bray, Athel Cornish-Bowden, Autumn A. Cuellar, Serge Dronov, Ernst Dieter Gilles, Martin Ginkel, Victoria Gor, Igor Goryanin, W. J. Hedley, T. Charles Hodgman, Jan-Hendrik S. Hofmeyr, Peter J. Hunter, Nick S. Juty, J. L. Kasberger, Andreas Kremling, Ursula Kummer, Nicolas Le Novère, Leslie M. Loew, D. Lucio, Pedro Mendes, E. Minch, Eric Mjolsness, Yoichi Nakayama, M. R. Nelson, Poul M. F. Nielsen, T. Sakurada, James C. Schaff, Bruce E. Shapiro, Thomas Simon Shimizu, Hugh D. Spence, Jörg Stelling, Koichi Takahashi, Masaru Tomita, J. Wagner, J. Wang
The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. Bioinform. 19 (4) (2003)
Bruce E. Shapiro, Andre Levchenko, Elliot M. Meyerowitz, Barbara J. Wold, Eric Mjolsness
Cellerator: extending a computer algebra system to include biochemical arrows for signal transduction simulations. Bioinform. 19 (5) (2003)
Bruce E. Shapiro
Osmotic Forces and Gap Junctions in Spreading Depression: A Computational Model. J. Comput. Neurosci. 10 (1) (2001)