Herbert M. Sauro

Publication Activity (10 Years)

Years Active: 1993-2024
Publications (10 Years): 34

Top Topics

Degree Distribution

Markup Language

Biological Systems

Top Venues

J. Integr. Bioinform.

Publications

Bartholomew E. Jardine, Lucian P. Smith, Herbert M. Sauro
MakeSBML: a tool for converting between Antimony and SBML. J. Integr. Bioinform. 21 (1) (2024)
Lucian P. Smith, Frank T. Bergmann, Alan Garny, Tomás Helikar, Jonathan R. Karr, David P. Nickerson, Herbert M. Sauro, Dagmar Waltemath, Matthias König
The simulation experiment description markup language (SED-ML): language specification for level 1 version 5. J. Integr. Bioinform. 21 (1) (2024)
Frank J. Bruggeman, Maaike Remeijer, Maarten Droste, Luis Salinas, Meike T. Wortel, Robert Planqué, Herbert M. Sauro, Bas Teusink, Hans V. Westerhoff
Whole-cell metabolic control analysis. Biosyst. 234 (2023)
Lillian T. Tatka, Wesley Luk, Timothy C. Elston, Joseph L. Hellerstein, Herbert M. Sauro
Cesium: A public database of evolved oscillatory reaction networks. Biosyst. 224 (2023)
Jin Xu, Jessie Jiang, Herbert M. Sauro
SBMLDiagrams: a python package to process and visualize SBML layout and render. Bioinform. 39 (1) (2023)
T. J. Sego, James P. Sluka, Herbert M. Sauro, James A. Glazier
Tissue Forge: Interactive biological and biophysics simulation environment. PLoS Comput. Biol. 19 (10) (2023)
Ciaran M. Welsh, Jin Xu, Lucian P. Smith, Matthias König, Kiri Choi, Herbert M. Sauro
libRoadRunner 2.0: a high performance SBML simulation and analysis library. Bioinform. 39 (1) (2023)
Jin Xu, Gary Geng, Nhan D. Nguyen, Carmen Perena-Cortes, Claire Samuels, Herbert M. Sauro
SBcoyote: An extensible Python-based reaction editor and viewer. Biosyst. 232 (2023)
Woosub Shin, John H. Gennari, Joseph L. Hellerstein, Herbert M. Sauro
An automated model annotation system (AMAS) for SBML models. Bioinform. 39 (10) (2023)
Steve Ma, Longxuan Fan, Sai Anish Konanki, Eva Liu, John H. Gennari, Lucian P. Smith, Joseph L. Hellerstein, Herbert M. Sauro
VSCode-Antimony: a source editor for building, analyzing, and translating antimony models. Bioinform. 39 (12) (2023)
Michael A Kochen, H. Steven Wiley, Song Feng, Herbert M. Sauro
SBbadger: biochemical reaction networks with definable degree distributions. Bioinform. 38 (22) (2022)
Bilal Shaikh, Lucian P. Smith, Dan Vasilescu, Gnaneswara Marupilla, Michael Wilson, Eran Agmon, Henry Agnew, Steven S. Andrews, Azraf Anwar, Moritz E. Beber, Frank T. Bergmann, David Brooks, Lutz Brusch, Laurence Calzone, Kiri Choi, Joshua Cooper, John Detloff, Brian Drawert, Michel Dumontier, G. Bard Ermentrout, James R. Faeder, Andrew P. Freiburger, Fabian Fröhlich, Akira Funahashi, Alan Garny, John H. Gennari, Padraig Gleeson, Anne Goelzer, Zachary Haiman, Jan Hasenauer, Joseph L. Hellerstein, Henning Hermjakob, Stefan Hoops, Jon C. Ison, Diego Jahn, Henry V. Jakubowski, Ryann Jordan, Matús Kalas, Matthias König, Wolfram Liebermeister, Rahuman S. Malik-Sheriff, Synchon Mandal, Robert McDougal, J. Kyle Medley, Pedro Mendes, Robert Müller, Chris J. Myers, Aurélien Naldi, Tung V. N. Nguyen, David P. Nickerson, Brett G. Olivier, Drashti Patoliya, Loïc Paulevé, Linda R. Petzold, Ankita Priya, Anand K. Rampadarath, Johann M. Rohwer, Ali S. Saglam, Dilawar Singh, Ankur Sinha, Jacky L. Snoep, Hugh Sorby, Ryan K. Spangler, Jörn Starruß, Payton J. Thomas, David van Niekerk, Daniel Weindl, Fengkai Zhang, Anna Zhukova, Arthur P. Goldberg, James C. Schaff, Michael L. Blinov, Herbert M. Sauro, Ion I. Moraru, Jonathan R. Karr
BioSimulators: a central registry of simulation engines and services for recommending specific tools. Nucleic Acids Res. 50 (W1) (2022)
Bilal Shaikh, Lucian P. Smith, Dan Vasilescu, Gnaneswara Marupilla, Michael Wilson, Eran Agmon, Henry Agnew, Steven S. Andrews, Azraf Anwar, Moritz E. Beber, Frank T. Bergmann, David Brooks, Lutz Brusch, Laurence Calzone, Kiri Choi, Joshua Cooper, John Detloff, Brian Drawert, Michel Dumontier, G. Bard Ermentrout, James R. Faeder, Andrew P. Freiburger, Fabian Fröhlich, Akira Funahashi, Alan Garny, John H. Gennari, Padraig Gleeson, Anne Goelzer, Zachary Haiman, Joseph L. Hellerstein, Stefan Hoops, Jon C. Ison, Diego Jahn, Henry V. Jakubowski, Ryann Jordan, Matús Kalas, Matthias König, Wolfram Liebermeister, Synchon Mandal, Robert McDougal, J. Kyle Medley, Pedro Mendes, Robert Müller, Chris J. Myers, Aurélien Naldi, Tung V. N. Nguyen, David P. Nickerson, Brett G. Olivier, Drashti Patoliya, Loïc Paulevé, Linda R. Petzold, Ankita Priya, Anand K. Rampadarath, Johann M. Rohwer, Ali S. Saglam, Dilawar Singh, Ankur Sinha, Jacky Snoep, Hugh Sorby, Ryan K. Spangler, Jörn Starruß, Payton J. Thomas, David van Niekerk, Daniel Weindl, Fengkai Zhang, Anna Zhukova, Arthur P. Goldberg, Michael L. Blinov, Herbert M. Sauro, Ion I. Moraru, Jonathan R. Karr
BioSimulators: a central registry of simulation engines and services for recommending specific tools. CoRR (2022)
Ciaran M. Welsh, Jin Xu, Lucian P. Smith, Matthias König, Kiri Choi, Herbert M. Sauro
libRoadRunner 2.0: A High-Performance SBML Simulation and Analysis Library. CoRR (2022)
Ciaran M. Welsh, David P. Nickerson, Anand Rampadarath, Maxwell Lewis Neal, Herbert M. Sauro, John H. Gennari
libOmexMeta: enabling semantic annotation of models to support FAIR principles. Bioinform. 37 (24) (2021)
Hasan Baig, Pedro Fontanarossa, Vishwesh V. Kulkarni, James Alastair McLaughlin, Prashant Vaidyanathan, Bryan Bartley, Shyam Bhakta, Swapnil Bhatia, Mike Bissell, Kevin Clancy, Robert Sidney Cox III, Ángel Goñi Moreno, Thomas E. Gorochowski, Raik Grünberg, Jihwan Lee, Augustin Luna, Curtis Madsen, Goksel Misirli, Tramy Nguyen, Nicolas Le Novère, Zachary Palchick, Matthew R. Pocock, Nicholas Roehner, Herbert M. Sauro, James Scott-Brown, John T. Sexton, Guy-Bart Stan, Jeffrey J. Tabor, Logan Terry, Marta Vazquez Vilar, Christopher A. Voigt, Anil Wipat, David Zong, Zach Zundel, Jacob Beal, Chris J. Myers
Synthetic biology open language visual (SBOL Visual) version 2.3. J. Integr. Bioinform. 18 (3) (2021)
Lucian P. Smith, Frank T. Bergmann, Alan Garny, Tomás Helikar, Jonathan R. Karr, David P. Nickerson, Herbert M. Sauro, Dagmar Waltemath, Matthias König
The simulation experiment description markup language (SED-ML): language specification for level 1 version 4. J. Integr. Bioinform. 18 (3) (2021)
Veronica Porubsky, Lucian P. Smith, Herbert M. Sauro
Publishing reproducible dynamic kinetic models. Briefings Bioinform. 22 (3) (2021)
Hasan Baig, Pedro Fontanarrosa, Vishwesh V. Kulkarni, James Alastair McLaughlin, Prashant Vaidyanathan, Bryan Bartley, Swapnil Bhatia, Shyam Bhakta, Michael Bissell, Kevin Clancy, Robert Sidney Cox III, Ángel Goñi Moreno, Thomas E. Gorochowski, Raik Grünberg, Augustin Luna, Curtis Madsen, Goksel Misirli, Tramy Nguyen, Nicolas Gambardella, Zachary Palchick, Matthew R. Pocock, Nicholas Roehner, Herbert M. Sauro, James Scott-Brown, John T. Sexton, Guy-Bart Stan, Jeffrey J. Tabor, Marta Vazquez Vilar, Christopher A. Voigt, Anil Wipat, David Zong, Zach Zundel, Jacob Beal, Chris J. Myers
Synthetic biology open language visual (SBOL visual) version 2.2. J. Integr. Bioinform. 17 (2-3) (2020)
Jason A. Papin, Feilim Mac Gabhann, Herbert M. Sauro, David P. Nickerson, Anand Rampadarath
Improving reproducibility in computational biology research. PLoS Comput. Biol. 16 (5) (2020)
J. Kyle Medley, Joseph L. Hellerstein, Herbert M. Sauro
libsbmljs - Enabling web-based SBML tools. Biosyst. 195 (2020)
J. Kyle Medley, Jonathan J. Y. Teo, Sung Sik Woo, Joseph L. Hellerstein, Rahul Sarpeshkar, Herbert M. Sauro
A compiler for biological networks on silicon chips. PLoS Comput. Biol. 16 (9) (2020)
Dagmar Waltemath, Martin Golebiewski, Michael L. Blinov, Padraig Gleeson, Henning Hermjakob, Michael Hucka, Esther Thea Inau, Sarah M. Keating, Matthias König, Olga Krebs, Rahuman S. Malik-Sheriff, David P. Nickerson, Ernst Oberortner, Herbert M. Sauro, Falk Schreiber, Lucian P. Smith, Melanie I. Stefan, Ulrike Wittig, Chris J. Myers
The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE). J. Integr. Bioinform. 17 (2-3) (2020)
Maxwell Lewis Neal, Matthias König, David P. Nickerson, Goksel Misirli, Reza Kalbasi, Andreas Dräger, Koray Atalag, Vijayalakshmi Chelliah, Michael T. Cooling, Daniel L. Cook, Sharon M. Crook, Miguel de Alba, Samuel H. Friedman, Alan Garny, John H. Gennari, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Nick S. Juty, Chris J. Myers, Brett G. Olivier, Herbert M. Sauro, Martin Scharm, Jacky L. Snoep, Vasundra Touré, Anil Wipat, Olaf Wolkenhauer, Dagmar Waltemath
Harmonizing semantic annotations for computational models in biology. Briefings Bioinform. 20 (2) (2019)
Parker S. Ruth, Herbert M. Sauro
A Commentary on the Linearity and Time-Invariance of ODE-Based Systems. CoRR (2019)
Curtis Madsen, Ángel Goñi Moreno, Umesh P, Zachary Palchick, Nicholas Roehner, Christian Atallah, Bryan Bartley, Kiri Choi, Robert Sidney Cox III, Thomas E. Gorochowski, Raik Grünberg, Chris Macklin, James Alastair McLaughlin, Xianwei Meng, Tramy Nguyen, Matthew R. Pocock, Meher Samineni, James Scott-Brown, Ysis Tarter, Michael Zhang, Zhen Zhang, Zach Zundel, Jacob Beal, Michael Bissell, Kevin Clancy, John H. Gennari, Goksel Misirli, Chris J. Myers, Ernst Oberortner, Herbert M. Sauro, Anil Wipat
Synthetic Biology Open Language (SBOL) Version 2.3. J. Integr. Bioinform. 16 (2) (2019)
Curtis Madsen, Ángel Goñi Moreno, Zachary Palchick, Umesh P, Nicholas Roehner, Bryan Bartley, Swapnil Bhatia, Shyam Bhakta, Mike Bissell, Kevin Clancy, Robert Sidney Cox III, Thomas E. Gorochowski, Raik Grünberg, Augustin Luna, James Alastair McLaughlin, Tramy Nguyen, Nicolas Le Novère, Matthew R. Pocock, Herbert M. Sauro, James Scott-Brown, John T. Sexton, Guy-Bart Stan, Jeffrey J. Tabor, Christopher A. Voigt, Zach Zundel, Chris J. Myers, Jacob Beal, Anil Wipat
Synthetic Biology Open Language Visual (SBOL Visual) Version 2.1. J. Integr. Bioinform. 16 (2) (2019)
Robert Sidney Cox III, Curtis Madsen, James Alastair McLaughlin, Tramy Nguyen, Nicholas Roehner, Bryan Bartley, Swapnil Bhatia, Mike Bissell, Kevin Clancy, Thomas E. Gorochowski, Raik Grünberg, Augustin Luna, Nicolas Le Novère, Matthew R. Pocock, Herbert M. Sauro, John T. Sexton, Guy-Bart Stan, Jeffrey J. Tabor, Christopher A. Voigt, Zach Zundel, Chris J. Myers, Jacob Beal, Anil Wipat
Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0. J. Integr. Bioinform. 15 (1) (2018)
Yosef Bedaso, Frank T. Bergmann, Kiri Choi, Kyle Medley, Herbert M. Sauro
A portable structural analysis library for reaction networks. Biosyst. (2018)
Kiri Choi, J. Kyle Medley, Matthias König, Kaylene Stocking, Lucian P. Smith, Stanley Gu, Herbert M. Sauro
Tellurium: An extensible python-based modeling environment for systems and synthetic biology. Biosyst. 171 (2018)
Robert Sidney Cox III, Curtis Madsen, James Alastair McLaughlin, Tramy Nguyen, Nicholas Roehner, Bryan Bartley, Jacob Beal, Michael Bissell, Kiri Choi, Kevin Clancy, Raik Grünberg, Chris Macklin, Goksel Misirli, Ernst Oberortner, Matthew R. Pocock, Meher Samineni, Michael Zhang, Zhen Zhang, Zach Zundel, John H. Gennari, Chris J. Myers, Herbert M. Sauro, Anil Wipat
Synthetic Biology Open Language (SBOL) Version 2.2.0. J. Integr. Bioinform. 15 (1) (2018)
J. Kyle Medley, Kiri Choi, Matthias König, Lucian P. Smith, Stanley Gu, Joseph L. Hellerstein, Stuart C. Sealfon, Herbert M. Sauro
Tellurium notebooks - An environment for reproducible dynamical modeling in systems biology. PLoS Comput. Biol. 14 (6) (2018)
Jacob Beal, Robert Sidney Cox III, Raik Grünberg, James Alastair McLaughlin, Tramy Nguyen, Bryan Bartley, Michael Bissell, Kiri Choi, Kevin Clancy, Chris Macklin, Curtis Madsen, Goksel Misirli, Ernst Oberortner, Matthew R. Pocock, Nicholas Roehner, Meher Samineni, Michael Zhang, Zhen Zhang, Zach Zundel, John H. Gennari, Chris J. Myers, Herbert M. Sauro, Anil Wipat
Synthetic Biology Open Language (SBOL) Version 2.1.0. J. Integr. Bioinform. 13 (3) (2016)
Kiri Choi, Lucian P. Smith, J. Kyle Medley, Herbert M. Sauro
phraSED-ML: A paraphrased, human-readable adaptation of SED-ML. J. Bioinform. Comput. Biol. 14 (6) (2016)
Bryan Bartley, Jacob Beal, Kevin Clancy, Goksel Misirli, Nicholas Roehner, Ernst Oberortner, Matthew R. Pocock, Michael Bissell, Curtis Madsen, Tramy Nguyen, Zhen Zhang, John H. Gennari, Chris J. Myers, Anil Wipat, Herbert M. Sauro
Synthetic Biology Open Language (SBOL) Version 2.0.0. J. Integr. Bioinform. 12 (2) (2015)
Endre T. Somogyi, Jean-Marie Bouteiller, James A. Glazier, Matthias König, J. Kyle Medley, Maciej H. Swat, Herbert M. Sauro
libRoadRunner: A High Performance SBML Simulation and Analysis Library. CoRR (2015)
Kyung Hyuk Kim, Kiri Choi, Bryan Bartley, Herbert M. Sauro
Controlling E. coli Gene Expression Noise. IEEE Trans. Biomed. Circuits Syst. 9 (4) (2015)
Endre T. Somogyi, Jean-Marie Bouteiller, James A. Glazier, Matthias König, J. Kyle Medley, Maciej H. Swat, Herbert M. Sauro
libRoadRunner: a high performance SBML simulation and analysis library. Bioinform. 31 (20) (2015)
Frank T. Bergmann, Richard R. Adams, Stuart L. Moodie, Jonathan Cooper, Mihai Glont, Martin Golebiewski, Michael Hucka, Camille Laibe, Andrew K. Miller, David P. Nickerson, Brett G. Olivier, Nicolas Rodriguez, Herbert M. Sauro, Martin Scharm, Stian Soiland-Reyes, Dagmar Waltemath, Florent Yvon, Nicolas Le Novère
COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project. BMC Bioinform. 15 (2014)
Pablo Meyer, Thomas Cokelaer, Deepak Chandran, Kyung Hyuk Kim, Po-Ru Loh, George Tucker, Mark Lipson, Bonnie Berger, Clemens Kreutz, Andreas Raue, Bernhard Steiert, Jens Timmer, Erhan Bilal, Herbert M. Sauro, Gustavo Stolovitzky, Julio Saez-Rodriguez
Network topology and parameter estimation: from experimental design methods to gene regulatory network kinetics using a community based approach. BMC Syst. Biol. 8 (2014)
Maxwell Lewis Neal, Michael T. Cooling, Lucian P. Smith, Christopher T. Thompson, Herbert M. Sauro, Brian E. Carlson, Daniel L. Cook, John H. Gennari
A Reappraisal of How to Build Modular, Reusable Models of Biological Systems. PLoS Comput. Biol. 10 (10) (2014)
Chris J. Myers, Herbert M. Sauro, Anil Wipat
Introduction to the Special Issue on Computational Synthetic Biology. ACM J. Emerg. Technol. Comput. Syst. 11 (3) (2014)
Lucian P. Smith, Erik Butterworth, James B. Bassingthwaighte, Herbert M. Sauro
SBML and CellML translation in Antimony and JSim. Bioinform. 30 (7) (2014)
Maxwell Lewis Neal, Michal Galdzicki, J. T. Gallimore, Herbert M. Sauro
A C library for retrieving specific reactions from the BioModels database. Bioinform. 30 (1) (2014)
Frank T. Bergmann, Richard Adams, Stuart L. Moodie, Jonathan Cooper, Mihai Glont, Martin Golebiewski, Michael Hucka, Camille Laibe, Andrew K. Miller, David P. Nickerson, Brett G. Olivier, Nicolas Rodriguez, Herbert M. Sauro, Martin Scharm, Stian Soiland-Reyes, Dagmar Waltemath, Florent Yvon, Nicolas Le Novère
COMBINE archive: One File To Share Them All. CoRR (2014)
Natasa Miskov-Zivanov, James R. Faeder, Chris J. Myers, Herbert M. Sauro
Modeling and design automation of biological circuits and systems. ICCAD (2012)
Sean C. Sleight, Herbert M. Sauro
Design and construction of a prototype CMY (Cyan-Magenta-Yellow) genetic circuit as a mutational readout device to measure evolutionary stability dynamics and determine design principles for robust synthetic systems. ALIFE (2012)
Kyung Hyuk Kim, Herbert M. Sauro
Measuring the degree of modularity in gene regulatory networks from the relaxation of finite perturbations. CDC (2012)
Kyung Hyuk Kim, Herbert M. Sauro
Adjusting Phenotypes by Noise Control. PLoS Comput. Biol. 8 (1) (2012)
Dagmar Waltemath, Richard R. Adams, Daniel A. Beard, Frank T. Bergmann, Upinder S. Bhalla, Randall Britten, Vijayalakshmi Chelliah, Mike T. Cooling, Jonathan Cooper, Edmund J. Crampin, Alan Garny, Stefan Hoops, Michael Hucka, Peter J. Hunter, Edda Klipp, Camille Laibe, Andrew K. Miller, Ion I. Moraru, David P. Nickerson, Poul M. F. Nielsen, Macha Nikolski, Sven Sahle, Herbert M. Sauro, Henning Schmidt, Jacky L. Snoep, Dominic P. Tolle, Olaf Wolkenhauer, Nicolas Le Novère
Minimum Information About a Simulation Experiment (MIASE). PLoS Comput. Biol. 7 (4) (2011)
Si Yuan Shen, Frank T. Bergmann, Herbert M. Sauro
SBML2TikZ: supporting the SBML render extension in LaTeX. Bioinform. 26 (21) (2010)
Lucian P. Smith, Frank T. Bergmann, Deepak Chandran, Herbert M. Sauro
Antimony: a modular model definition language. Bioinform. 25 (18) (2009)
Frank T. Bergmann, Herbert M. Sauro
Comparing simulation results of SBML capable simulators. Bioinform. 24 (17) (2008)
Ravishankar Rao Vallabhajosyula, Herbert M. Sauro
Stochastic simulation GUI for biochemical networks. Bioinform. 23 (14) (2007)
Vijay Chickarmane, Animesh Ray, Herbert M. Sauro, Ali Nadim
A Model for p53 Dynamics Triggered by DNA Damage. SIAM J. Appl. Dyn. Syst. 6 (1) (2007)
Herbert M. Sauro
Innovation in software for systems biology: is there any? WSC (2006)
Herbert M. Sauro, David Harel, Marta Z. Kwiatkowska, Clifford A. Shaffer, Adelinde M. Uhrmacher, Michael Hucka, Pedro Mendes, Lena Strömbäck, John J. Tyson
Challenges for modeling and simulation methods in systems biology. WSC (2006)
Anastasia Deckard, Frank T. Bergmann, Herbert M. Sauro
Supporting the SBML layout extension. Bioinform. 22 (23) (2006)
Ravishankar Rao Vallabhajosyula, Herbert M. Sauro
Complexity reduction of biochemical networks. WSC (2006)
Ravishankar Rao Vallabhajosyula, Vijay Chickarmane, Herbert M. Sauro
Conservation analysis of large biochemical networks. Bioinform. 22 (3) (2006)
Nicolas Le Novère, Benjamin J. Bornstein, Alexander Broicher, Mélanie Courtot, Marco Donizelli, Harish Dharuri, Lu Li, Herbert M. Sauro, Maria J. Schilstra, Bruce E. Shapiro, Jacky L. Snoep, Michael Hucka
BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems. Nucleic Acids Res. 34 (Database-Issue) (2006)
Frank T. Bergmann, Herbert M. Sauro
SBW - a modular framework for systems biology. WSC (2006)
Vijay Chickarmane, Carl Troein, Ulrike A. Nuber, Herbert M. Sauro, Carsten Peterson
Transcriptional Dynamics of the Embryonic Stem Cell Switch. PLoS Comput. Biol. 2 (9) (2006)
Herbert M. Sauro
Simulation of biochemical networks - Cellular networks as dynamic control systems. EMBC (2006)
Vijay Chickarmane, Sri R. Paladugu, Frank T. Bergmann, Herbert M. Sauro
Bifurcation discovery tool. Bioinform. 21 (18) (2005)
Cameron Wellock, Vijay Chickarmane, Herbert M. Sauro
The SBW-CMATLAB interface. Bioinform. 21 (6) (2005)
Michael Hucka, Andrew Finney, Herbert M. Sauro, H. Bolouri, John C. Doyle, Hiroaki Kitano, Adam P. Arkin, Benjamin J. Bornstein, D. Bray, Athel Cornish-Bowden, Autumn A. Cuellar, Serge Dronov, Ernst Dieter Gilles, Martin Ginkel, Victoria Gor, Igor Goryanin, W. J. Hedley, T. Charles Hodgman, Jan-Hendrik S. Hofmeyr, Peter J. Hunter, Nick S. Juty, J. L. Kasberger, Andreas Kremling, Ursula Kummer, Nicolas Le Novère, Leslie M. Loew, D. Lucio, Pedro Mendes, E. Minch, Eric Mjolsness, Yoichi Nakayama, M. R. Nelson, Poul M. F. Nielsen, T. Sakurada, James C. Schaff, Bruce E. Shapiro, Thomas Simon Shimizu, Hugh D. Spence, Jörg Stelling, Koichi Takahashi, Masaru Tomita, J. Wagner, J. Wang
The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. Bioinform. 19 (4) (2003)
Michael Hucka, Andrew Finney, Herbert M. Sauro, H. Bolouri, John C. Doyle, Hiroaki Kitano
The ERATO Systems Biology Workbench: Enabling Interaction and Exchange Between Software Tools for Computational Biology. Pacific Symposium on Biocomputing (2002)
J. H. Woods, Herbert M. Sauro
Elasticities in Metabolic Control Analysis: algebraic derivation of simplified expressions. Comput. Appl. Biosci. 13 (2) (1997)
Herbert M. Sauro
SCAMP: a general-purpose simulator and metabolic control analysis program. Comput. Appl. Biosci. 9 (4) (1993)