Maxwell Lewis Neal

Publication Activity (10 Years)

Years Active: 2006-2021
Publications (10 Years): 9

Top Topics

Physiological Processes

Computational Model

Semi Automatically

Top Venues

J. Biomed. Semant.

J. Integr. Bioinform.

Publications

Ciaran M. Welsh, David P. Nickerson, Anand Rampadarath, Maxwell Lewis Neal, Herbert M. Sauro, John H. Gennari
libOmexMeta: enabling semantic annotation of models to support FAIR principles. Bioinform. 37 (24) (2021)
John H. Gennari, Matthias König, Goksel Misirli, Maxwell Lewis Neal, David P. Nickerson, Dagmar Waltemath
OMEX metadata specification (version 1.2). J. Integr. Bioinform. 18 (3) (2021)
Maxwell Lewis Neal, John H. Gennari, Dagmar Waltemath, David P. Nickerson, Matthias König
Open modeling and exchange (OMEX) metadata specification version 1.0. J. Integr. Bioinform. 17 (2-3) (2020)
Daniel L. Cook, John H. Gennari, Maxwell Lewis Neal
The Ontology of Physics for Biology - A Companion to Basic Formal Ontology. ICBO (2019)
Maxwell Lewis Neal, Matthias König, David P. Nickerson, Goksel Misirli, Reza Kalbasi, Andreas Dräger, Koray Atalag, Vijayalakshmi Chelliah, Michael T. Cooling, Daniel L. Cook, Sharon M. Crook, Miguel de Alba, Samuel H. Friedman, Alan Garny, John H. Gennari, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Nick S. Juty, Chris J. Myers, Brett G. Olivier, Herbert M. Sauro, Martin Scharm, Jacky L. Snoep, Vasundra Touré, Anil Wipat, Olaf Wolkenhauer, Dagmar Waltemath
Harmonizing semantic annotations for computational models in biology. Briefings Bioinform. 20 (2) (2019)
Dewan M. Sarwar, Reza Kalbasi, John H. Gennari, Brian E. Carlson, Maxwell Lewis Neal, Bernard de Bono, Koray Atalag, Peter J. Hunter, David P. Nickerson
Model annotation and discovery with the Physiome Model Repository. BMC Bioinform. 20 (1) (2019)
Maxwell Lewis Neal, Christopher T. Thompson, Karam G. Kim, Ryan C. James, Daniel L. Cook, Brian E. Carlson, John H. Gennari
SemGen: a tool for semantics-based annotation and composition of biosimulation models. Bioinform. 35 (9) (2019)
Daniel L. Cook, John H. Gennari, Maxwell Lewis Neal
Extending the Ontology of Physics for Biology with Thermodynamics. ICBO (2017)
Maxwell Lewis Neal, John H. Gennari, Daniel L. Cook
Qualitative Causal Analyses of Biosimulation Models. ICBO/BioCreative (2016)
Maxwell Lewis Neal, Michael T. Cooling, Lucian P. Smith, Christopher T. Thompson, Herbert M. Sauro, Brian E. Carlson, Daniel L. Cook, John H. Gennari
A Reappraisal of How to Build Modular, Reusable Models of Biological Systems. PLoS Comput. Biol. 10 (10) (2014)
Maxwell Lewis Neal, Michal Galdzicki, J. T. Gallimore, Herbert M. Sauro
A C library for retrieving specific reactions from the BioModels database. Bioinform. 30 (1) (2014)
Daniel L. Cook, Maxwell Lewis Neal, Fred L. Bookstein, John H. Gennari
Ontology of physics for biology: representing physical dependencies as a basis for biological processes. J. Biomed. Semant. 4 (2013)
Nazanin Tabesh-Saleki, Brian E. Carlson, Christopher T. Thompson, Maxwell Lewis Neal, Daniel L. Cook, Mary Shimoyama
Innovative Use of Ontologies: Association of Physiological Pathways to Corresponding Computational Models and Disparate Data Types. AMIA (2013)
Maxwell Lewis Neal, Daniel L. Cook, John H. Gennari
An OWL knowledge base for classifying and querying collections of physiological models: A prototype human physiome. ICBO (2013)
Erik Butterworth, Bartholomew Jardine, Gary M. Raymond, Maxwell Lewis Neal, James B. Bassingthwaighte
JSim, an open-source modeling system for data analysis. F1000Research 2 (2013)
Daniel L. Cook, Maxwell Lewis Neal, Robert Hoehndorf, Georgios V. Gkoutos, John H. Gennari
Representing physiological processes and their participants with PhysioMaps. J. Biomed. Semant. 4 (S-1) (2013)
Daniel L. Cook, Michal Galdzicki, Maxwell Lewis Neal, José L. V. Mejino Jr., John H. Gennari
HeartCyc: A Cardiac Cycle Process Ontology Based in the Ontology of Physics for Biology. ICBO (2011)
John H. Gennari, Maxwell Lewis Neal, Michal Galdzicki, Daniel L. Cook
Multiple ontologies in action: Composite annotations for biosimulation models. J. Biomed. Informatics 44 (1) (2011)
Maxwell Lewis Neal, Roy Kerckhoffs
Current progress in patient-specific modeling. Briefings Bioinform. 11 (1) (2010)
Maxwell Lewis Neal, John H. Gennari, Theo Arts, Daniel L. Cook
Advances in Semantic Representation for Multiscale Biosimulation: A Case Study in Merging Models. Pacific Symposium on Biocomputing (2009)
John H. Gennari, Maxwell Lewis Neal, Brian E. Carlson, Daniel L. Cook
Integration of Multi-Scale Biosimulation Models via Light-Weight Semantics. Pacific Symposium on Biocomputing (2008)
Daniel L. Cook, José L. V. Mejino Jr., Maxwell Lewis Neal, John H. Gennari
Bridging Biological Ontologies and Biosimulation: The Ontology of Physics for Biology. AMIA (2008)
Daniel L. Rubin, David Grossman, Maxwell Lewis Neal, Daniel L. Cook, James B. Bassingthwaighte, Mark A. Musen
Ontology-Based Representation of Simulation Models of Physiology. AMIA (2006)