Andreas Dräger

ORCID

Publication Activity (10 Years)

Years Active: 2007-2023
Publications (10 Years): 23

Top Venues

J. Integr. Bioinform.

Bioinform.

PLoS Comput. Biol.

BMC Bioinform.

Eberhard Karls University of Tübingen (PHD)

Education History

Eberhard Karls University of Tübingen

PHD

Publications

Manuel Glöckler, Andreas Dräger, Reihaneh Mostolizadeh
Hierarchical modelling of microbial communities. Bioinform. 39 (1) (2023)
Famke Bäuerle, Gwendolyn O. Döbel, Laura Camus, Simon Heilbronner, Andreas Dräger
Genome-scale metabolic models consistently predict in vitro characteristics of Corynebacterium striatum. Frontiers Bioinform. 3 (2023)
Nantia Leonidou, Alina Renz, Reihaneh Mostolizadeh, Andreas Dräger
New workflow predicts drug targets against SARS-CoV-2 via metabolic changes in infected cells. PLoS Comput. Biol. 19 (3) (2023)
Bhanwar Lal Puniya, Andreas Dräger
Advancements in computational modelling of biological systems: seventh annual SysMod meeting. Bioinform. 39 (9) (2023)
Hemil Panchiwala, Shalin Shah, Hannes Planatscher, Mykola Zakharchuk, Matthias König, Andreas Dräger
The systems biology simulation core library. Bioinform. 38 (3) (2022)
Anna Niarakis, Juilee Thakar, Matteo Barberis, María Rodríguez Martínez, Tomás Helikar, Marc R. Birtwistle, Claudine Chaouiya, Laurence Calzone, Andreas Dräger
Computational modelling in health and disease: highlights of the 6th annual SysMod meeting. Bioinform. 38 (21) (2022)
Manuel Glöckler, Andreas Dräger, Reihaneh Mostolizadeh
NCMW: A Python Package to Analyze Metabolic Interactions in the Nasal Microbiome. Frontiers Bioinform. 2 (2022)
Constantin Holzapfel, Miriam Hoene, Xinjie Zhao, Chunxiu Hu, Cora Weigert, Andreas Niess, Guowang Xu, Rainer Lehmann, Andreas Dräger, Michael Krone
FluxomicsExplorer: Differential visual analysis of Flux Sampling based on Metabolomics. Comput. Graph. 108 (2022)
Andreas Dräger, Tomás Helikar, Matteo Barberis, Marc Birtwistle, Laurence Calzone, Claudine Chaouiya, Jan Hasenauer, Jonathan R. Karr, Anna Niarakis, María Rodríguez Martínez, Julio Saez-Rodriguez, Juilee Thakar
SysMod: the ISCB community for data-driven computational modelling and multi-scale analysis of biological systems. Bioinform. 37 (21) (2021)
Frank T. Bergmann, Tobias Czauderna, Ugur Dogrusoz, Adrien Rougny, Andreas Dräger, Vasundra Touré, Alexander Mazein, Michael L. Blinov, Augustin Luna
Systems biology graphical notation markup language (SBGNML) version 0.3. J. Integr. Bioinform. 17 (2-3) (2020)
Lea Buchweitz, James T. Yurkovich, Christoph Blessing, Veronika Kohler, Fabian Schwarzkopf, Zachary A. King, Laurence Yang, Freyr Jóhannsson, Ólafur E. Sigurjónsson, Ottar Rolfsson, Julian Heinrich, Andreas Dräger
Visualizing metabolic network dynamics through time-series metabolomic data. BMC Bioinform. 21 (1) (2020)
Charles J. Norsigian, Neha Pusarla, John Luke McConn, James T. Yurkovich, Andreas Dräger, Bernhard O. Palsson, Zachary A. King
BiGG Models 2020: multi-strain genome-scale models and expansion across the phylogenetic tree. Nucleic Acids Res. 48 (Database-Issue) (2020)
Fengkai Zhang, Lucian P. Smith, Michael L. Blinov, James R. Faeder, William S. Hlavacek, José Juan Tapia, Sarah M. Keating, Nicolas Rodriguez, Andreas Dräger, Leonard A. Harris, Andrew Finney, Bin Hu, Michael Hucka, Martin Meier-Schellersheim
Systems biology markup language (SBML) level 3 package: multistate, multicomponent and multicompartment species, version 1, release 2. J. Integr. Bioinform. 17 (2-3) (2020)
Michael Krone, Andreas Dräger, Ebru Cobanoglu, Manuel Otto Harke, Miriam Hoene, Cora Weigert, Rainer Lehmann
A Web-based Visual Analytics Application for Biological Networks. EuroVis (Posters) (2020)
Maxwell Lewis Neal, Matthias König, David P. Nickerson, Goksel Misirli, Reza Kalbasi, Andreas Dräger, Koray Atalag, Vijayalakshmi Chelliah, Michael T. Cooling, Daniel L. Cook, Sharon M. Crook, Miguel de Alba, Samuel H. Friedman, Alan Garny, John H. Gennari, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Nick S. Juty, Chris J. Myers, Brett G. Olivier, Herbert M. Sauro, Martin Scharm, Jacky L. Snoep, Vasundra Touré, Anil Wipat, Olaf Wolkenhauer, Dagmar Waltemath
Harmonizing semantic annotations for computational models in biology. Briefings Bioinform. 20 (2) (2019)
Michael Hucka, Frank T. Bergmann, Claudine Chaouiya, Andreas Dräger, Stefan Hoops, Sarah M. Keating, Matthias König, Nicolas Le Novère, Chris J. Myers, Brett G. Olivier, Sven Sahle, James C. Schaff, Rahuman S. Malik-Sheriff, Lucian P. Smith, Dagmar Waltemath, Darren J. Wilkinson, Fengkai Zhang
The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2. J. Integr. Bioinform. 16 (2) (2019)
Paolo Romano, Arnaud Céol, Andreas Dräger, Antonino Fiannaca, Rosalba Giugno, Massimo La Rosa, Luciano Milanesi, Ulrich Pfeffer, Riccardo Rizzo, Soo-Yong Shin, Junfeng Xia, Alfonso Urso
The 2017 Network Tools and Applications in Biology (NETTAB) workshop: aims, topics and outcomes. BMC Bioinform. (4) (2019)
Adrien Rougny, Vasundra Touré, Stuart L. Moodie, Irina Balaur, Tobias Czauderna, Hanna Borlinghaus, Ugur Dogrusoz, Alexander Mazein, Andreas Dräger, Michael L. Blinov, Alice Villéger, Robin Haw, Emek Demir, Huaiyu Mi, Anatoly A. Sorokin, Falk Schreiber, Augustin Luna
Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0. J. Integr. Bioinform. 16 (2) (2019)
Michael Hucka, Frank T. Bergmann, Andreas Dräger, Stefan Hoops, Sarah M. Keating, Nicolas Le Novère, Chris J. Myers, Brett G. Olivier, Sven Sahle, James C. Schaff, Lucian P. Smith, Dagmar Waltemath, Darren J. Wilkinson
The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core. J. Integr. Bioinform. 15 (1) (2018)
Michael Hucka, Frank T. Bergmann, Andreas Dräger, Stefan Hoops, Sarah M. Keating, Nicolas Le Novère, Chris J. Myers, Brett G. Olivier, Sven Sahle, James C. Schaff, Lucian P. Smith, Dagmar Waltemath, Darren J. Wilkinson
The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core. J. Integr. Bioinform. 15 (1) (2018)
Roland Keller, Marcus Klein, Maria Thomas, Andreas Dräger, Ute Metzger, Markus F. Templin, Thomas O. Joos, Wolfgang E. Thasler, Andreas Zell, Ulrich M. Zanger
Coordinating Role of RXRα in Downregulating Hepatic Detoxification during Inflammation Revealed by Fuzzy-Logic Modeling. PLoS Comput. Biol. 12 (1) (2016)
Bin Du, Daniel C. Zielinski, Erol S. Kavvas, Andreas Dräger, Justin Tan, Zhen Zhang, Kayla E. Ruggiero, Garri A. Arzumanyan, Bernhard O. Palsson
Evaluation of rate law approximations in bottom-up kinetic models of metabolism. BMC Syst. Biol. 10 (2016)
Zachary A. King, Justin Lu, Andreas Dräger, Philip Miller, Stephen Federowicz, Joshua A. Lerman, Ali Ebrahim, Bernhard O. Palsson, Nathan E. Lewis
BiGG Models: A platform for integrating, standardizing and sharing genome-scale models. Nucleic Acids Res. 44 (Database-Issue) (2016)
Nicolas Rodriguez, Alex Thomas, Leandro H. Watanabe, Ibrahim Y. Vazirabad, Victor Kofia, Harold F. Gómez, Florian Mittag, Jakob Matthes, Jan Rudolph, Finja Wrzodek, Eugen Netz, Alexander Diamantikos, Johannes Eichner, Roland Keller, Clemens Wrzodek, Sebastian Fröhlich, Nathan E. Lewis, Chris J. Myers, Nicolas Le Novère, Bernhard Ø. Palsson, Michael Hucka, Andreas Dräger
JSBML 1.0: providing a smorgasbord of options to encode systems biology models. Bioinform. 31 (20) (2015)
Zachary A. King, Andreas Dräger, Ali Ebrahim, Nikolaus Sonnenschein, Nathan E. Lewis, Bernhard O. Palsson
Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Biological Pathways. PLoS Comput. Biol. 11 (8) (2015)
Andreas Dräger, Daniel C. Zielinski, Roland Keller, Matthias Rall, Johannes Eichner, Bernhard O. Palsson, Andreas Zell
SBMLsqueezer 2: context-sensitive creation of kinetic equations in biochemical networks. BMC Syst. Biol. 9 (2015)
Michael Hucka, Frank T. Bergmann, Andreas Dräger, Stefan Hoops, Sarah M. Keating, Nicolas Le Novère, Chris J. Myers, Brett G. Olivier, Sven Sahle, James C. Schaff, Lucian P. Smith, Dagmar Waltemath, Darren J. Wilkinson
Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions. J. Integr. Bioinform. 12 (2) (2015)
Alexander Dörr, Roland Keller, Andreas Zell, Andreas Dräger
SBMLSimulator: A Java Tool for Model Simulation and Parameter Estimation in Systems Biology. Comput. 2 (4) (2014)
Roland Keller, Alexander Dörr, Akito Tabira, Akira Funahashi, Michael J. Ziller, Richard R. Adams, Nicolas Rodriguez, Nicolas Le Novère, Noriko Hiroi, Hannes Planatscher, Andreas Zell, Andreas Dräger
The systems biology simulation core algorithm. BMC Syst. Biol. 7 (2013)
Finja Büchel, Nicolas Rodriguez, Neil Swainston, Clemens Wrzodek, Tobias Czauderna, Roland Keller, Florian Mittag, Michael Schubert, Mihai Glont, Martin Golebiewski, Martijn P. van Iersel, Sarah M. Keating, Matthias Rall, Michael Wybrow, Henning Hermjakob, Michael Hucka, Douglas B. Kell, Wolfgang Müller, Pedro Mendes, Andreas Zell, Claudine Chaouiya, Julio Saez-Rodriguez, Falk Schreiber, Camille Laibe, Andreas Dräger, Nicolas Le Novère
Path2Models: large-scale generation of computational models from biochemical pathway maps. BMC Syst. Biol. 7 (2013)
Claudine Chaouiya, Duncan Bérenguier, Sarah M. Keating, Aurélien Naldi, Martijn P. van Iersel, Nicolas Rodriguez, Andreas Dräger, Finja Büchel, Thomas Cokelaer, Bryan M. Kowal, Benjamin Wicks, Emanuel J. V. Gonçalves, Julien Dorier, Michel Page, Pedro T. Monteiro, Axel von Kamp, Ioannis Xenarios, Hidde de Jong, Michael Hucka, Steffen Klamt, Denis Thieffry, Nicolas Le Novère, Julio Saez-Rodriguez, Tomás Helikar
SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools. BMC Syst. Biol. 7 (2013)
Clemens Wrzodek, Finja Büchel, Manuel Ruff, Andreas Dräger, Andreas Zell
Precise generation of systems biology models from KEGG pathways. BMC Syst. Biol. 7 (2013)
Sebastian Vlaic, Bianca Hoffmann, Peter Kupfer, Michael Weber, Andreas Dräger
GRN2SBML: automated encoding and annotation of inferred gene regulatory networks complying with SBML. Bioinform. 29 (17) (2013)
Finja Büchel, Clemens Wrzodek, Florian Mittag, Andreas Dräger, Johannes Eichner, Nicolas Rodriguez, Nicolas Le Novère, Andreas Zell
Qualitative translation of relations from BioPAX to SBML qual. Bioinform. 28 (20) (2012)
Matthias König, Andreas Dräger, Hermann-Georg Holzhütter
CySBML: a Cytoscape plugin for SBML. Bioinform. 28 (18) (2012)
Adrian Schröder, Clemens Wrzodek, Johannes Wollnik, Andreas Dräger, Dierk Wanke, Kenneth W. Berendzen, Andreas Zell
Inferring transcriptional regulators for sets of co-expressed genes by multi-objective evolutionary optimization. IEEE Congress on Evolutionary Computation (2011)
Clemens Wrzodek, Andreas Dräger, Andreas Zell
KEGGtranslator: visualizing and converting the KEGG PATHWAY database to various formats. Bioinform. 27 (16) (2011)
Andreas Dräger, Nicolas Rodriguez, Marine Dumousseau, Alexander Dörr, Clemens Wrzodek, Nicolas Le Novère, Andreas Zell, Michael Hucka
JSBML: a flexible Java library for working with SBML. Bioinform. 27 (15) (2011)
Adrian Schröder, Johannes Wollnik, Clemens Wrzodek, Andreas Dräger, Michael Bonin, Oliver Burk, Maria Thomas, Wolfgang E. Thasler, Ulrich M. Zanger, Andreas Zell
Inferring statin-induced gene regulatory relationships in primary human hepatocytes. Bioinform. 27 (18) (2011)
Sandro Lambeck, Andreas Dräger, Reinhard Guthke
Network Inference by Considering Multiple Objectives: Insights from In Vivo Transcriptomic Data Generated by a Synthetic Network. BIOCOMP (2010)
Clemens Wrzodek, Adrian Schröder, Andreas Dräger, Dierk Wanke, Kenneth W. Berendzen, Marcel Kronfeld, Klaus Harter, Andreas Zell
ModuleMaster: A new tool to decipher transcriptional regulatory networks. Biosyst. 99 (1) (2010)
Andreas Dräger, Marcel Kronfeld, Michael J. Ziller, Jochen Supper, Hannes Planatscher, Jørgen B. Magnus, Marco Oldiges, Oliver Kohlbacher, Andreas Zell
Modeling metabolic networks in C. glutamicum: a comparison of rate laws in combination with various parameter optimization strategies. BMC Syst. Biol. 3 (2009)
Marcel Kronfeld, Andreas Dräger, Moritz Aschoff, Andreas Zell
On the Benefits of Multimodal Optimization for Metablic Network Modeling. GCB (2009)
Jochen Supper, Lucía Spangenberg, Hannes Planatscher, Andreas Dräger, Adrian Schröder, Andreas Zell
BowTieBuilder: modeling signal transduction pathways. BMC Syst. Biol. 3 (2009)
Andreas Dräger, Hannes Planatscher, Dieudonné Motsou Wouamba, Adrian Schröder, Michael Hucka, Lukas Endler, Martin Golebiewski, Wolfgang Müller, Andreas Zell
X: Conversion of SBML files into human-readable reports. Bioinform. 25 (11) (2009)
Richard C. G. Holland, Thomas A. Down, Matthew R. Pocock, Andreas Prlic, David S. Huen, Keith James, Sylvain Foisy, Andreas Dräger, Andy Yates, Michael L. Heuer, Mark J. Schreiber
BioJava: an open-source framework for bioinformatics. Bioinform. 24 (18) (2008)
Andreas Dräger, Nadine Hassis, Jochen Supper, Adrian Schröder, Andreas Zell
SBMLsqueezer: A CellDesigner plug-in to generate kinetic rate equations for biochemical networks. BMC Syst. Biol. 2 (2008)
Andreas Dräger, Jochen Supper, Hannes Planatscher, Jørgen B. Magnus, Marco Oldiges, Andreas Zell
Comparing various evolutionary algorithms on the parameter optimization of the valine and leucine biosynthesis in corynebacterium glutamicum. IEEE Congress on Evolutionary Computation (2007)
Jochen Supper, Holger Fröhlich, Christian Spieth, Andreas Dräger, Andreas Zell
Inferring Gene Regulatory Networks by Machine Learning Methods. APBC (2007)
Andreas Dräger, Marcel Kronfeld, Jochen Supper, Hannes Planatscher, Jørgen B. Magnus, Marco Oldiges, Andreas Zell
Benchmarking evolutionary algorithms on convenience kinetics modelsof the valine and leucine biosynthesis in C. glutamicum. IEEE Congress on Evolutionary Computation (2007)

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Publication Activity (10 Years)

Top Topics

Top Venues

Andreas Dräger