Zachary A. King

Publication Activity (10 Years)

Years Active: 2015-2020
Publications (10 Years): 10

Top Topics

Biological Pathways

Experimental Data

Gene Expression

Top Venues

PLoS Comput. Biol.

Nucleic Acids Res.

BMC Syst. Biol.

Publications

Avi Kumar, Jack Mitchener, Zachary A. King, Christian M. Metallo
Escher-Trace: a web application for pathway-based visualization of stable isotope tracing data. BMC Bioinform. 21 (1) (2020)
Lea Buchweitz, James T. Yurkovich, Christoph Blessing, Veronika Kohler, Fabian Schwarzkopf, Zachary A. King, Laurence Yang, Freyr Jóhannsson, Ólafur E. Sigurjónsson, Ottar Rolfsson, Julian Heinrich, Andreas Dräger
Visualizing metabolic network dynamics through time-series metabolomic data. BMC Bioinform. 21 (1) (2020)
Charles J. Norsigian, Neha Pusarla, John Luke McConn, James T. Yurkovich, Andreas Dräger, Bernhard O. Palsson, Zachary A. King
BiGG Models 2020: multi-strain genome-scale models and expansion across the phylogenetic tree. Nucleic Acids Res. 48 (Database-Issue) (2020)
Colton J. Lloyd, Zachary A. King, Troy E. Sandberg, Ying Hefner, Connor A. Olson, Patrick V. Phaneuf, Edward J. O'Brien, Jon G. Sanders, Rodolfo A. Salido, Karenina Sanders, Caitriona Brennan, Gregory Humphrey, Rob Knight, Adam M. Feist
The genetic basis for adaptation of model-designed syntrophic co-cultures. PLoS Comput. Biol. 15 (3) (2019)
Jean-Christophe Lachance, Colton J. Lloyd, Jonathan M. Monk, Laurence Yang, Anand Sastry, Yara Seif, Bernhard O. Palsson, Sébastien Rodrigue, Adam M. Feist, Zachary A. King, Pierre-Étienne Jacques
BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data. PLoS Comput. Biol. 15 (4) (2019)
Chuankai Cheng, Edward J. O'Brien, Douglas McCloskey, Jose Utrilla, Connor A. Olson, Ryan A. LaCroix, Troy E. Sandberg, Adam M. Feist, Bernhard O. Palsson, Zachary A. King
Laboratory evolution reveals a two-dimensional rate-yield tradeoff in microbial metabolism. PLoS Comput. Biol. 15 (6) (2019)
Elliot Rowe, Bernhard O. Palsson, Zachary A. King
Escher-FBA: a web application for interactive flux balance analysis. BMC Syst. Biol. 12 (1) (2018)
Colton J. Lloyd, Ali Ebrahim, Laurence Yang, Zachary A. King, Edward Catoiu, Edward J. O'Brien, Joanne K. Liu, Bernhard O. Palsson
COBRAme: A computational framework for genome-scale models of metabolism and gene expression. PLoS Comput. Biol. 14 (7) (2018)
Zachary A. King, Justin Lu, Andreas Dräger, Philip Miller, Stephen Federowicz, Joshua A. Lerman, Ali Ebrahim, Bernhard O. Palsson, Nathan E. Lewis
BiGG Models: A platform for integrating, standardizing and sharing genome-scale models. Nucleic Acids Res. 44 (Database-Issue) (2016)
Zachary A. King, Andreas Dräger, Ali Ebrahim, Nikolaus Sonnenschein, Nathan E. Lewis, Bernhard O. Palsson
Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Biological Pathways. PLoS Comput. Biol. 11 (8) (2015)