James T. Yurkovich

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 11

Top Topics

Crossword Puzzles

Component Failures

Systems Biology

Top Venues

PLoS Comput. Biol.

BMC Syst. Biol.

Frontiers Digit. Health

Publications

Yue Zhang, Guangrong Qin, Boris Aguilar, Noa Rappaport, James T. Yurkovich, Lance Pflieger, Sui Huang, Leroy Hood, Ilya Shmulevich
A framework towards digital twins for type 2 diabetes. Frontiers Digit. Health 6 (2024)
Zachary B. Haiman, Daniel C. Zielinski, Yuko Koike, James T. Yurkovich, Bernhard O. Palsson
MASSpy: Building, simulating, and visualizing dynamic biological models in Python using mass action kinetics. PLoS Comput. Biol. 17 (1) (2021)
Lea Buchweitz, James T. Yurkovich, Christoph Blessing, Veronika Kohler, Fabian Schwarzkopf, Zachary A. King, Laurence Yang, Freyr Jóhannsson, Ólafur E. Sigurjónsson, Ottar Rolfsson, Julian Heinrich, Andreas Dräger
Visualizing metabolic network dynamics through time-series metabolomic data. BMC Bioinform. 21 (1) (2020)
Charles J. Norsigian, Neha Pusarla, John Luke McConn, James T. Yurkovich, Andreas Dräger, Bernhard O. Palsson, Zachary A. King
BiGG Models 2020: multi-strain genome-scale models and expansion across the phylogenetic tree. Nucleic Acids Res. 48 (Database-Issue) (2020)
Erol S. Kavvas, Yara Seif, James T. Yurkovich, Charles J. Norsigian, Saugat Poudel, William W. Greenwald, Sankha Ghatak, Bernhard O. Palsson, Jonathan M. Monk
Updated and standardized genome-scale reconstruction of Mycobacterium tuberculosis H37Rv, iEK1011, simulates flux states indicative of physiological conditions. BMC Syst. Biol. 12 (1) (2018)
James T. Yurkovich, Miguel A. Alcantar, Zachary B. Haiman, Bernhard O. Palsson
Network-level allosteric effects are elucidated by detailing how ligand-binding events modulate utilization of catalytic potentials. PLoS Comput. Biol. 14 (8) (2018)
James T. Yurkovich, Aarash Bordbar, Ólafur E. Sigurjónsson, Bernhard O. Palsson
Systems biology as an emerging paradigm in transfusion medicine. BMC Syst. Biol. 12 (1) (2018)
James T. Yurkovich, Laurence Yang, Bernhard O. Palsson
Utilizing biomarkers to forecast quantitative metabolite concentration profiles in human red blood cells. CCTA (2017)
James T. Yurkovich, Laurence Yang, Bernhard O. Palsson
Biomarkers are used to predict quantitative metabolite concentration profiles in human red blood cells. PLoS Comput. Biol. 13 (3) (2017)
Dagmar Waltemath, Jonathan R. Karr, Frank T. Bergmann, Vijayalakshmi Chelliah, Michael Hucka, Marcus Krantz, Wolfram Liebermeister, Pedro Mendes, Chris J. Myers, Pinar Pir, Begum Alaybeyoglu, Naveen K. Aranganathan, Kambiz Baghalian, Arne T. Bittig, Paulo E. Pinto Burke, Matteo Cantarelli, Yin Hoon Chew, Rafael S. Costa, Joseph Cursons, Tobias Czauderna, Arthur P. Goldberg, Harold F. Gómez, Jens Hahn, Tuure Hameri, Daniel F. Hernandez Gardiol, Denis Kazakiewicz, Ilya Kiselev, Vincent Knight-Schrijver, Christian Knüpfer, Matthias König, Daewon Lee, Audald Lloret-Villas, Nikita Mandrik, J. Kyle Medley, Bertrand Moreau, Hojjat Naderi-Meshkin, Sucheendra K. Palaniappan, Daniel Priego-Espinosa, Martin Scharm, Mahesh Sharma, Kieran Smallbone, Natalie J. Stanford, Je-Hoon Song, Tom Theile, Milenko Tokic, Namrata Tomar, Vasundra Touré, Jannis Uhlendorf, Thawfeek M. Varusai, Leandro H. Watanabe, Florian Wendland, Markus Wolfien, James T. Yurkovich, Yan Zhu, Argyris Zardilis, Anna Zhukova, Falk Schreiber
Toward Community Standards and Software for Whole-Cell Modeling. IEEE Trans. Biomed. Eng. 63 (10) (2016)
James T. Yurkovich, Bernhard O. Palsson
Solving Puzzles With Missing Pieces: The Power of Systems Biology [Point of View]. Proc. IEEE 104 (1) (2016)