Sucheendra K. Palaniappan

Publication Activity (10 Years)

Years Active: 2011-2024
Publications (10 Years): 13

Top Topics

Biological Pathways

Partially Observable

Conditional Entropy

Top Venues

Artif. Intell. Rev.

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Uchenna Akujuobi, Priyadarshini Kumari, Jihun Choi, Samy Badreddine, Kana Maruyama, Sucheendra K. Palaniappan, Tarek R. Besold
Link prediction for hypothesis generation: an active curriculum learning infused temporal graph-based approach. Artif. Intell. Rev. 57 (9) (2024)
Uchenna Akujuobi, Michael Spranger, Sucheendra K. Palaniappan, Xiangliang Zhang
T-PAIR: Temporal Node pair Embedding for Automatic Biomedical Hypothesis Generation (Extended abstract). ICDE (2023)
Nikitha Karkera, Sathwik Acharya, Sucheendra K. Palaniappan
Leveraging pre-trained language models for mining microbiome-disease relationships. BMC Bioinform. 24 (1) (2023)
Uchenna Akujuobi, Michael Spranger, Sucheendra K. Palaniappan, Xiangliang Zhang
T-PAIR: Temporal Node-Pair Embedding for Automatic Biomedical Hypothesis Generation. IEEE Trans. Knowl. Data Eng. 34 (6) (2022)
R. Ramanathan, Nicolas K. Shinada, Michinobu Shimatani, Yuhei Yamaguchi, Junichi Tanaka, Yuta Iizuka, Sucheendra K. Palaniappan
A Reciprocal Embedding Framework For Modelling Mutual Preferences. AAAI (2021)
R. Ramanathan, Nicolas K. Shinada, Sucheendra K. Palaniappan
Building a reciprocal recommendation system at scale from scratch: Learnings from one of Japan's prominent dating applications. RecSys (2020)
Matthieu Pichené, Sucheendra K. Palaniappan, Eric Fabre, Blaise Genest
Modeling Variability in Populations of Cells Using Approximated Multivariate Distributions. IEEE ACM Trans. Comput. Biol. Bioinform. 17 (5) (2020)
Sucheendra K. Palaniappan, François Bertaux, Matthieu Pichené, Eric Fabre, Grégory Batt, Blaise Genest
Abstracting the dynamics of biological pathways using information theory: a case study of apoptosis pathway. Bioinform. 33 (13) (2017)
Michael Spranger, Sucheendra K. Palaniappan, Samik Ghosh
Measuring the State of the Art of Automated Pathway Curation Using Graph Algorithms - A Case Study of the mTOR Pathway. CoRR (2016)
Dagmar Waltemath, Jonathan R. Karr, Frank T. Bergmann, Vijayalakshmi Chelliah, Michael Hucka, Marcus Krantz, Wolfram Liebermeister, Pedro Mendes, Chris J. Myers, Pinar Pir, Begum Alaybeyoglu, Naveen K. Aranganathan, Kambiz Baghalian, Arne T. Bittig, Paulo E. Pinto Burke, Matteo Cantarelli, Yin Hoon Chew, Rafael S. Costa, Joseph Cursons, Tobias Czauderna, Arthur P. Goldberg, Harold F. Gómez, Jens Hahn, Tuure Hameri, Daniel F. Hernandez Gardiol, Denis Kazakiewicz, Ilya Kiselev, Vincent Knight-Schrijver, Christian Knüpfer, Matthias König, Daewon Lee, Audald Lloret-Villas, Nikita Mandrik, J. Kyle Medley, Bertrand Moreau, Hojjat Naderi-Meshkin, Sucheendra K. Palaniappan, Daniel Priego-Espinosa, Martin Scharm, Mahesh Sharma, Kieran Smallbone, Natalie J. Stanford, Je-Hoon Song, Tom Theile, Milenko Tokic, Namrata Tomar, Vasundra Touré, Jannis Uhlendorf, Thawfeek M. Varusai, Leandro H. Watanabe, Florian Wendland, Markus Wolfien, James T. Yurkovich, Yan Zhu, Argyris Zardilis, Anna Zhukova, Falk Schreiber
Toward Community Standards and Software for Whole-Cell Modeling. IEEE Trans. Biomed. Eng. 63 (10) (2016)
Michael Spranger, Sucheendra K. Palaniappan, Samik Ghosh
Extracting Biological Pathway Models From NLP Event Representations. CoRR (2016)
Sucheendra K. Palaniappan, Matthieu Pichené, Grégory Batt, Eric Fabre, Blaise Genest
A Look-Ahead Simulation Algorithm for DBN Models of Biochemical Pathways. HSB (2016)
Michael Spranger, Sucheendra K. Palaniappan, Samik Ghosh
Measuring the State of the Art of Automated Pathway Curation Using Graph Algorithms - A Case Study of the mTOR Pathway. BioNLP@ACL (2016)
Michael Spranger, Sucheendra K. Palaniappan, Samik Ghosh
Extracting Biological Pathway Models From NLP Event Representations. BioNLP@IJCNLP (2015)
Benjamin M. Gyori, Daniel Paulin, Sucheendra K. Palaniappan
Probabilistic verification of partially observable dynamical systems. CoRR (2014)
Sucheendra K. Palaniappan, Benjamin M. Gyori, Bing Liu, David Hsu, P. S. Thiagarajan
Statistical Model Checking Based Calibration and Analysis of Bio-pathway Models. CMSB (2013)
Andrei Hagiescu, Bing Liu, R. Ramanathan, Sucheendra K. Palaniappan, Zheng Cui, Bipasa Chattopadhyay, P. S. Thiagarajan, Weng-Fai Wong
GPU code generation for ODE-based applications with phased shared-data access patterns. ACM Trans. Archit. Code Optim. 10 (4) (2013)
Sucheendra K. Palaniappan, S. Akshay, Bing Liu, Blaise Genest, P. S. Thiagarajan
A Hybrid Factored Frontier Algorithm for Dynamic Bayesian Networks with a Biopathways Application. IEEE ACM Trans. Comput. Biol. Bioinform. 9 (5) (2012)
Bing Liu, Andrei Hagiescu, Sucheendra K. Palaniappan, Bipasa Chattopadhyay, Zheng Cui, Weng-Fai Wong, P. S. Thiagarajan
Approximate probabilistic analysis of biopathway dynamics. Bioinform. 28 (11) (2012)
Chuan Hock Koh, Sucheendra K. Palaniappan, P. S. Thiagarajan, Limsoon Wong
Improved statistical model checking methods for pathway analysis. BMC Bioinform. 13 (S-17) (2012)
Sucheendra K. Palaniappan, P. S. Thiagarajan
Dynamic Bayesian Networks: A Factored Model of Probabilistic Dynamics. ATVA (2012)
Sucheendra K. Palaniappan, S. Akshay, Blaise Genest, P. S. Thiagarajan
A hybrid factored frontier algorithm for dynamic Bayesian network models of biopathways. CMSB (2011)