Kieran Smallbone

Publication Activity (10 Years)

Years Active: 2007-2017
Publications (10 Years): 4

Top Topics

Biochemical Networks

Benchmark Problems

Systems Biology

Top Venues

BMC Syst. Biol.

Database J. Biol. Databases Curation

Comput. Biol. Chem.

Publications

Pierre Millard, Kieran Smallbone, Pedro Mendes
Metabolic regulation is sufficient for global and robust coordination of glucose uptake, catabolism, energy production and growth in Escherichia coli. PLoS Comput. Biol. 13 (2) (2017)
Dagmar Waltemath, Jonathan R. Karr, Frank T. Bergmann, Vijayalakshmi Chelliah, Michael Hucka, Marcus Krantz, Wolfram Liebermeister, Pedro Mendes, Chris J. Myers, Pinar Pir, Begum Alaybeyoglu, Naveen K. Aranganathan, Kambiz Baghalian, Arne T. Bittig, Paulo E. Pinto Burke, Matteo Cantarelli, Yin Hoon Chew, Rafael S. Costa, Joseph Cursons, Tobias Czauderna, Arthur P. Goldberg, Harold F. Gómez, Jens Hahn, Tuure Hameri, Daniel F. Hernandez Gardiol, Denis Kazakiewicz, Ilya Kiselev, Vincent Knight-Schrijver, Christian Knüpfer, Matthias König, Daewon Lee, Audald Lloret-Villas, Nikita Mandrik, J. Kyle Medley, Bertrand Moreau, Hojjat Naderi-Meshkin, Sucheendra K. Palaniappan, Daniel Priego-Espinosa, Martin Scharm, Mahesh Sharma, Kieran Smallbone, Natalie J. Stanford, Je-Hoon Song, Tom Theile, Milenko Tokic, Namrata Tomar, Vasundra Touré, Jannis Uhlendorf, Thawfeek M. Varusai, Leandro H. Watanabe, Florian Wendland, Markus Wolfien, James T. Yurkovich, Yan Zhu, Argyris Zardilis, Anna Zhukova, Falk Schreiber
Toward Community Standards and Software for Whole-Cell Modeling. IEEE Trans. Biomed. Eng. 63 (10) (2016)
Alejandro Fernández Villaverde, David Henriques, Kieran Smallbone, Sophia Bongard, Joachim Schmid, Damjan Cicin-Sain, Anton Crombach, Julio Saez-Rodriguez, Klaus Mauch, Eva Balsa-Canto, Pedro Mendes, Johannes Jaeger, Julio R. Banga
BioPreDyn-bench: a suite of benchmark problems for dynamic modelling in systems biology. BMC Syst. Biol. 9 (2015)
Brandon E. Barker, Narayanan Sadagopan, Yiping Wang, Kieran Smallbone, Christopher R. Myers, Hongwei Xi, Jason W. Locasale, Zhenglong Gu
A robust and efficient method for estimating enzyme complex abundance and metabolic flux from expression data. Comput. Biol. Chem. 59 (2015)
Alejandro Fernández Villaverde, David Henriques, Kieran Smallbone, Sophia Bongard, Joachim Schmid, Damjan Cicin-Sain, Anton Crombach, Julio Saez-Rodriguez, Klaus Mauch, Eva Balsa-Canto, Pedro Mendes, Johannes Jaeger, Julio R. Banga
BioPreDyn-bench: benchmark problems for kinetic modelling in systems biology. CoRR (2014)
Benjamin D. Heavner, Kieran Smallbone, Nathan D. Price, Larry P. Walker
Version 6 of the consensus yeast metabolic network refines biochemical coverage and improves model performance. Database J. Biol. Databases Curation 2013 (2013)
Benjamin D. Heavner, Kieran Smallbone, Brandon Barker, Pedro Mendes, Larry P. Walker
Yeast 5 - an expanded reconstruction of the Saccharomyces cerevisiae metabolic network. BMC Syst. Biol. 6 (2012)
Dave Lee, Kieran Smallbone, Warwick B. Dunn, Ettore Murabito, Catherine Winder, Douglas B. Kell, Pedro Mendes, Neil Swainston
Improving metabolic flux predictions using absolute gene expression data. BMC Syst. Biol. 6 (2012)
Pedro Mendes, Natalie J. Stanford, Kieran Smallbone
Kinetic modelling of large-scale metabolic networks. CMSB (2011)
Neil Swainston, Kieran Smallbone, Pedro Mendes, Douglas B. Kell, Norman W. Paton
The SuBliMinaL Toolbox: automating steps in the reconstruction of metabolic networks. J. Integr. Bioinform. 8 (2) (2011)
Paul D. Dobson, Kieran Smallbone, Daniel Jameson, Evangelos Simeonidis, Karin Lanthaler, Pinar Pir, Chuan Lu, Neil Swainston, Warwick B. Dunn, Paul Fisher, Duncan Hull, Marie Brown, Olusegun Oshota, Natalie J. Stanford, Douglas B. Kell, Ross D. King, Stephen G. Oliver, Robert D. Stevens, Pedro Mendes
Further developments towards a genome-scale metabolic model of yeast. BMC Syst. Biol. 4 (2010)
Kieran Smallbone, Evangelos Simeonidis, Neil Swainston, Pedro Mendes
Towards a genome-scale kinetic model of cellular metabolism. BMC Syst. Biol. 4 (2010)
Catherine J. Kelly, Kieran Smallbone, Tiina Roose, Michael Brady
A Model to Investigate the Feasibility of Fdg as a Surrogate Marker of Hypoxia. ISBI (2007)