Alejandro Fernández Villaverde

Publication Activity (10 Years)

Years Active: 2009-2024
Publications (10 Years): 22

Top Topics

Computational Methods

Biological Systems

Systems Biology

Top Venues

PLoS Comput. Biol.

Comput. Methods Programs Biomed.

Publications

Sandra Díaz-Seoane, Antonio Barreiro Blas, Alejandro Fernández Villaverde
Corrigendum to "Controllability and accessibility analysis of nonlinear biosystems" [Computer Methods and Programs in Biomedicine 242 (2023) 107837]. Comput. Methods Programs Biomed. 245 (2024)
José Antonio González-Prieto, Alejandro Fernández Villaverde
Smooth Non Linear High Gain Observers for a Class of Dynamical Systems. IEEE Access 10 (2022)
Gemma Massonis, Julio R. Banga, Alejandro Fernández Villaverde
Structural identifiability and observability of compartmental models of the COVID-19 pandemic. Annu. Rev. Control. 51 (2021)
Alejandro Fernández Villaverde, Gemma Massonis
On testing structural identifiability by a simple scaling method: Relying on scaling symmetries can be misleading. PLoS Comput. Biol. 17 (10) (2021)
Gemma Massonis, Julio R. Banga, Alejandro Fernández Villaverde
Repairing dynamic models: a method to obtain identifiable and observable reparameterizations with mechanistic insights. CoRR (2020)
Nerea Martínez, Alejandro Fernández Villaverde
Nonlinear observability algorithms with known and unknown inputs: analysis and implementation. CoRR (2020)
Gemma Massonis, Alejandro Fernández Villaverde
Finding and Breaking Lie Symmetries: Implications for Structural Identifiability and Observability in Biological Modelling. Symmetry 12 (3) (2020)
Alejandro Fernández Villaverde, Fabian Fröhlich, Daniel Weindl, Jan Hasenauer, Julio R. Banga
Benchmarking optimization methods for parameter estimation in large kinetic models. Bioinform. 35 (5) (2019)
Alejandro Fernández Villaverde
Observability and Structural Identifiability of Nonlinear Biological Systems. Complex. 2019 (2019)
Alejandro Fernández Villaverde, Carlo Cosentino, Attila Gábor, Gábor Szederkényi
Computational Methods for Identification and Modelling of Complex Biological Systems. Complex. 2019 (2019)
Alejandro Fernández Villaverde, Neil D. Evans, Michael J. Chappell, Julio R. Banga
Input-Dependent Structural Identifiability of Nonlinear Systems. IEEE Control. Syst. Lett. 3 (2) (2019)
Alejandro Fernández Villaverde, Kolja Becker, Julio R. Banga
PREMER: A Tool to Infer Biological Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 15 (4) (2018)
Alejandro Fernández Villaverde, Julio R. Banga
Dynamical compensation and structural identifiability: analysis, implications, and reconciliation. CoRR (2017)
David Henriques, Alejandro Fernández Villaverde, Miguel Rocha, Julio Saez-Rodriguez, Julio R. Banga
Data-driven reverse engineering of signaling pathways using ensembles of dynamic models. PLoS Comput. Biol. 13 (2) (2017)
Alejandro Fernández Villaverde, Julio R. Banga
Dynamical compensation in biological systems as a particular case of structural non-identifiability. CoRR (2017)
Alejandro Fernández Villaverde, Julio R. Banga
Dynamical compensation and structural identifiability of biological models: Analysis, implications, and reconciliation. PLoS Comput. Biol. 13 (11) (2017)
Attila Gábor, Alejandro Fernández Villaverde, Julio R. Banga
Parameter identifiability analysis and visualization in large-scale kinetic models of biosystems. BMC Syst. Biol. 11 (1) (2017)
Alejandro Fernández Villaverde, Antonio Barreiro, Antonis Papachristodoulou
Structural Identifiability of Dynamic Systems Biology Models. PLoS Comput. Biol. 12 (10) (2016)
Alejandro Fernández Villaverde, Kolja Becker, Julio R. Banga
PREMER: Parallel Reverse Engineering of Biological Networks with Information Theory. CMSB (2016)
Abel Folch-Fortuny, Alejandro Fernández Villaverde, Alberto Ferrer, Julio R. Banga
Enabling network inference methods to handle missing data and outliers. BMC Bioinform. 16 (2015)
Alejandro Fernández Villaverde, Sophia Bongard, Klaus Mauch, Dirk Müller, Eva Balsa-Canto, Joachim Schmid, Julio R. Banga
A consensus approach for estimating the predictive accuracy of dynamic models in biology. Comput. Methods Programs Biomed. 119 (1) (2015)
Alejandro Fernández Villaverde, David Henriques, Kieran Smallbone, Sophia Bongard, Joachim Schmid, Damjan Cicin-Sain, Anton Crombach, Julio Saez-Rodriguez, Klaus Mauch, Eva Balsa-Canto, Pedro Mendes, Johannes Jaeger, Julio R. Banga
BioPreDyn-bench: a suite of benchmark problems for dynamic modelling in systems biology. BMC Syst. Biol. 9 (2015)
Alejandro Fernández Villaverde, David Henriques, Kieran Smallbone, Sophia Bongard, Joachim Schmid, Damjan Cicin-Sain, Anton Crombach, Julio Saez-Rodriguez, Klaus Mauch, Eva Balsa-Canto, Pedro Mendes, Johannes Jaeger, Julio R. Banga
BioPreDyn-bench: benchmark problems for kinetic modelling in systems biology. CoRR (2014)
Alejandro Fernández Villaverde, Sophia Bongard, Klaus Mauch, Dirk Müller, Eva Balsa-Canto, Joachim Schmid, Julio R. Banga
High-Confidence Predictions in Systems Biology Dynamic Models. PACBB (2014)
Jose A. Egea, David Henriques, Thomas Cokelaer, Alejandro Fernández Villaverde, Aidan MacNamara, Diana-Patricia Danciu, Julio R. Banga, Julio Saez-Rodriguez
MEIGO: an open-source software suite based on metaheuristics for global optimization in systems biology and bioinformatics. BMC Bioinform. 15 (2014)
Jose A. Egea, David Henriques, Thomas Cokelaer, Alejandro Fernández Villaverde, Julio R. Banga, Julio Saez-Rodriguez
MEIGO: an open-source software suite based on metaheuristics for global optimization in systems biology and bioinformatics. CoRR (2013)
Alejandro Fernández Villaverde, Jose A. Egea, Julio R. Banga
A cooperative strategy for parameter estimation in large scale systems biology models. BMC Syst. Biol. 6 (2012)
Alejandro Fernández Villaverde, Antonio Barreiro Blas, Joaquín Carrasco, Alfonso Baños Torrico
Reset Control for Passive Bilateral Teleoperation. IEEE Trans. Ind. Electron. 58 (7) (2011)
John Ross, Alejandro Fernández Villaverde
Thermodynamics and Fluctuations Far From Equilibrium. Entropy 12 (10) (2010)
Alejandro Fernández Villaverde, Antonio Barreiro, Cesáreo Raimúndez
Passive position error correction in Internet-based teleoperation. Autom. 46 (11) (2010)
Cesáreo Raimúndez, Antonio Barreiro, Alejandro Fernández Villaverde
Reset control for injecting dissipation into port-hamiltonian systems. ECC (2009)