Stephen G. Oliver

Publication Activity (10 Years)

Years Active: 2000-2021
Publications (10 Years): 9

Top Topics

Gene Expression

Top Venues

Nucleic Acids Res.

PLoS Comput. Biol.

Publications

Nishanthi Gangadharan, David Sewell, Richard Turner, Ray Field, Matthew Cheeks, Stephen G. Oliver, Nigel K. H. Slater, Duygu Dikicioglu
Data intelligence for process performance prediction in biologics manufacturing. Comput. Chem. Eng. 146 (2021)
Jorge Júlvez, Stephen G. Oliver
Extending the Modeling and Analysis Capabilities of Continuous Petri Nets by Flexible Nets. CDC (2021)
Seth Carbon, Eric Douglass, Benjamin M. Good, Deepak R. Unni, Nomi L. Harris, Christopher J. Mungall, Siddartha Basu, Rex L. Chisholm, Robert J. Dodson, Eric Hartline, Petra Fey, Paul D. Thomas, Laurent-Philippe Albou, Dustin Ebert, Michael J. Kesling, Huaiyu Mi, Anushya Muruganujan, Xiaosong Huang, Tremayne Mushayahama, Sandra A. LaBonte, Deborah A. Siegele, Giulia Antonazzo, Helen Attrill, Nick H. Brown, Phani V. Garapati, Steven J. Marygold, Vitor Trovisco, Gilberto dos Santos, Kathleen Falls, Christopher J. Tabone, Pinglei Zhou, Joshua L. Goodman, Victor B. Strelets, Jim Thurmond, Penelope Garmiri, Rizwan Ishtiaq, Milagros Rodríguez-López, Marcio Luis Acencio, Martin Kuiper, Astrid Lægreid, Colin Logie, Ruth C. Lovering, Barbara Kramarz, Shirin C. C. Saverimuttu, Sandra M. Pinheiro, Heather Gunn, Renzhi Su, Katherine E. Thurlow, Marcus C. Chibucos, Michelle G. Giglio, Suvarna Nadendla, James B. Munro, Rebecca C. Jackson, Margaret J. Duesbury, Noemi del-Toro, Birgit H. M. Meldal, Kalpana Paneerselvam, Livia Perfetto, Pablo Porras, Sandra E. Orchard, Anjali Shrivastava, Hsin-Yu Chang, Robert D. Finn, Alex L. Mitchell, Neil D. Rawlings, Lorna J. Richardson, Amaia Sangrador-Vegas, Judith A. Blake, Karen R. Christie, Mary E. Dolan, Harold J. Drabkin, David P. Hill, Li Ni, Dmitry M. Sitnikov, Midori A. Harris, Stephen G. Oliver, Kim Rutherford, Valerie Wood, Jaqueline Hayles, Jürg Bähler, Elizabeth R. Bolton, Jeffrey DePons, Melinda R. Dwinell, G. Thomas Hayman, Mary L. Kaldunski, Anne E. Kwitek, Stanley J. F. Laulederkind, Cody Plasterer, Marek Tutaj, Mahima Vedi, Shur-Jen Wang, Peter D'Eustachio, Lisa Matthews, James P. Balhoff, Suzi A. Aleksander, Michael J. Alexander, J. Michael Cherry, Stacia R. Engel, Felix Gondwe, Kalpana Karra, Stuart R. Miyasato, Robert S. Nash, Matt Simison, Marek S. Skrzypek, Shuai Weng, Edith D. Wong, Marc Feuermann, Pascale Gaudet, Anne Morgat, Erica Bakker, Tanya Z. Berardini, Leonore Reiser, Shabari Subramaniam, Eva Huala, Cecilia N. Arighi, Andrea H. Auchincloss, Kristian B. Axelsen, Ghislaine Argoud-Puy, Alex Bateman, Marie-Claude Blatter, Emmanuel Boutet, Emily Bowler, Lionel Breuza, Alan Bridge, Ramona Britto, Hema Bye-A-Jee, Cristina Casals-Casas, Elisabeth Coudert, Paul Denny, Anne Estreicher, Maria Livia Famiglietti, George E. Georghiou, Arnaud Gos, Nadine Gruaz-Gumowski, Emma Hatton-Ellis, Chantal Hulo, Alexandr Ignatchenko, Florence Jungo, Kati Laiho, Philippe Le Mercier, Damien Lieberherr, Antonia Lock, Yvonne Lussi, Alistair MacDougall, Michele Magrane, Maria Jesus Martin, Patrick Masson, Darren A. Natale, Nevila Hyka-Nouspikel, Ivo Pedruzzi, Lucille Pourcel, Sylvain Poux, Sangya Pundir, Catherine Rivoire, Elena Speretta, Shyamala Sundaram, Nidhi Tyagi, Kate Warner, Rossana Zaru, Cathy H. Wu, Alexander D. Diehl, Juancarlos Chan, Christian A. Grove, Raymond Y. N. Lee, Hans-Michael Müller, Daniela Raciti, Kimberly Van Auken, Paul W. Sternberg, Matthew Berriman, Michael Paulini, Kevin L. Howe, Sibyl Gao, Adam Wright, Lincoln Stein, Douglas G. Howe, Sabrina Toro, Monte Westerfield, Pankaj Jaiswal, Laurel Cooper, Justin Elser
The Gene Ontology resource: enriching a GOld mine. Nucleic Acids Res. 49 (Database-Issue) (2021)
Jorge Júlvez, Stephen G. Oliver
fnyzer: A Python Package for the Analysis of Flexible Nets. CMSB (2020)
Jorge Júlvez, Stephen G. Oliver
Steady State Analysis of Flexible Nets. IEEE Trans. Autom. Control. 65 (6) (2020)
Antonia Lock, Kim Rutherford, Midori A. Harris, Jacqueline Hayles, Stephen G. Oliver, Jürg Bähler, Valerie Wood
PomBase 2018: user-driven reimplementation of the fission yeast database provides rapid and intuitive access to diverse, interconnected information. Nucleic Acids Res. 47 (Database-Issue) (2019)
Jorge Júlvez, Stephen G. Oliver
Flexible Nets: a modeling formalism for dynamic systems with uncertain parameters. Discret. Event Dyn. Syst. 29 (3) (2019)
Hayden Tronnolone, Jennifer M. Gardner, Joanna F. Sundstrom, Vladimir Jiranek, Stephen G. Oliver, Benjamin J. Binder
TAMMiCol: Tool for analysis of the morphology of microbial colonies. PLoS Comput. Biol. 14 (12) (2018)
Isik Baris Fidaner, Ayca Cankorur-Cetinkaya, Duygu Dikicioglu, Betül Kirdar, Ali Taylan Cemgil, Stephen G. Oliver
CLUSTERnGO: a user-defined modelling platform for two-stage clustering of time-series data. Bioinform. 32 (3) (2016)
Benjamin J. Binder, Joanna F. Sundstrom, Jennifer M. Gardner, Vladimir Jiranek, Stephen G. Oliver
Quantifying Two-Dimensional Filamentous and Invasive Growth Spatial Patterns in Yeast Colonies. PLoS Comput. Biol. 11 (2) (2015)
Panayotis Vlastaridis, Stephen G. Oliver, Yves Van de Peer, Grigoris D. Amoutzias
The Challenges of Interpreting Phosphoproteomics Data: A Critical View Through the Bioinformatics Lens. CIBB (2015)
Mark D. McDowall, Midori A. Harris, Antonia Lock, Kim Rutherford, Daniel M. Staines, Jürg Bähler, Paul J. Kersey, Stephen G. Oliver, Valerie Wood
PomBase 2015: updates to the fission yeast database. Nucleic Acids Res. 43 (Database-Issue) (2015)
Kim M. Rutherford, Midori A. Harris, Antonia Lock, Stephen G. Oliver, Valerie Wood
Canto: an online tool for community literature curation. Bioinform. 30 (12) (2014)
Midori A. Harris, Antonia Lock, Jürg Bähler, Stephen G. Oliver, Valerie Wood
FYPO: the fission yeast phenotype ontology. Bioinform. 29 (13) (2013)
Valerie Wood, Midori A. Harris, Mark D. McDowall, Kim Rutherford, Brendan W. Vaughan, Daniel M. Staines, Martin Aslett, Antonia Lock, Jürg Bähler, Paul J. Kersey, Stephen G. Oliver
PomBase: a comprehensive online resource for fission yeast. Nucleic Acids Res. 40 (Database-Issue) (2012)
Pinar Pir, Alex Gutteridge, Jian Wu, Bharat Rash, Douglas B. Kell, Nianshu Zhang, Stephen G. Oliver
The genetic control of growth rate: a systems biology study in yeast. BMC Syst. Biol. 6 (2012)
Duygu Dikicioglu, Erkan Karabekmez, Bharat Rash, Pinar Pir, Betül Kirdar, Stephen G. Oliver
How yeast re-programmes its transcriptional profile in response to different nutrient impulses. BMC Syst. Biol. 5 (2011)
Nicola Bonzanni, Nianshu Zhang, Stephen G. Oliver, Jasmin Fisher
. Bioinform. 27 (13) (2011)
Paul D. Dobson, Kieran Smallbone, Daniel Jameson, Evangelos Simeonidis, Karin Lanthaler, Pinar Pir, Chuan Lu, Neil Swainston, Warwick B. Dunn, Paul Fisher, Duncan Hull, Marie Brown, Olusegun Oshota, Natalie J. Stanford, Douglas B. Kell, Ross D. King, Stephen G. Oliver, Robert D. Stevens, Pedro Mendes
Further developments towards a genome-scale metabolic model of yeast. BMC Syst. Biol. 4 (2010)
Daniel Jameson, David A. Turner, John Ankers, Stephnie Kennedy, Sheila Ryan, Neil Swainston, Tony Griffiths, David G. Spiller, Stephen G. Oliver, Michael R. H. White, Douglas B. Kell, Norman W. Paton
Information management for high content live cell imaging. BMC Bioinform. 10 (2009)
Ross D. King, Jem J. Rowland, Wayne Aubrey, Maria Liakata, Magdalena Markham, Larisa N. Soldatova, Ken E. Whelan, Amanda Clare, Mike Young, Andrew Sparkes, Stephen G. Oliver, Pinar Pir
The Robot Scientist Adam. Computer 42 (8) (2009)
Jennifer A. Siepen, Khalid Belhajjame, Julian N. Selley, Suzanne M. Embury, Norman W. Paton, Carole A. Goble, Stephen G. Oliver, Robert Stevens, Lucas Zamboulis, Nigel J. Martin, Alexandra Poulovassilis, Philip Jones, Richard G. Côté, Henning Hermjakob, Melissa M. Pentony, David T. Jones, Christine A. Orengo, Simon J. Hubbard
ISPIDER Central: an integrated database web-server for proteomics. Nucleic Acids Res. 36 (Web-Server-Issue) (2008)
Peter Li, Juan I. Castrillo, Giles Velarde, Ingo Wassink, Stian Soiland-Reyes, Stuart Owen, David Withers, Tom Oinn, Matthew R. Pocock, Carole A. Goble, Stephen G. Oliver, Douglas B. Kell
Performing statistical analyses on quantitative data in Taverna workflows: An example using R and maxdBrowse to identify differentially-expressed genes from microarray data. BMC Bioinform. 9 (2008)
Daniel Jameson, Kevin L. Garwood, Christopher Garwood, Tim Booth, Pinar Alper, Stephen G. Oliver, Norman W. Paton
Data capture in bioinformatics: requirements and experiences with Pedro. BMC Bioinform. 9 (2008)
Grigoris D. Amoutzias, Elgar Pichler, Nina Mian, David De Graaf, Anastasia Imsiridou, Marc Robinson-Rechavi, Erich Bornberg-Bauer, David L. Robertson, Stephen G. Oliver
A protein interaction atlas for the nuclear receptors: properties and quality of a hub-based dimerisation network. BMC Syst. Biol. 1 (2007)
Luke Hakes, Simon C. Lovell, Stephen G. Oliver, David L. Robertson
Similarity in expression accounts for correlated evolution of interacting proteins. BMC Syst. Biol. 1 (S-1) (2007)
Intikhab Alam, Mike Cornell, Darren M. Soanes, Cornelia Hedeler, Han Min Wong, Magnus Rattray, Simon J. Hubbard, Nicholas J. Talbot, Stephen G. Oliver, Norman W. Paton
A Methodology for Comparative Functional Genomics. J. Integr. Bioinform. 4 (3) (2007)
Kevin L. Garwood, Christopher Garwood, Cornelia Hedeler, Tony Griffiths, Neil Swainston, Stephen G. Oliver, Norman W. Paton
Model-driven user interfaces for bioinformatics data resources: regenerating the wheel as an alternative to reinventing it. BMC Bioinform. 7 (2006)
Irena Spasic, Warwick B. Dunn, Giles Velarde, Andy Tseng, Helen Jenkins, Nigel Hardy, Stephen G. Oliver, Douglas B. Kell
MeMo: a hybrid SQL/XML approach to metabolomic data management for functional genomics. BMC Bioinform. 7 (2006)
Pinar Pir, Betül Kirdar, Andrew Hayes, Z. Ilsen Önsan, Kutlu Ö. Ülgen, Stephen G. Oliver
Integrative investigation of metabolic and transcriptomic data. BMC Bioinform. 7 (2006)
Kevin L. Garwood, Chris F. Taylor, Kai J. Runte, Andy Brass, Stephen G. Oliver, Norman W. Paton
Pedro: a configurable data entry tool for XML. Bioinform. 20 (15) (2004)
J. E. Mabey, M. J. Anderson, Peter F. Giles, Crispin J. Miller, Terri K. Attwood, Norman W. Paton, Erich Bornberg-Bauer, G. D. Robson, Stephen G. Oliver, David W. Denning
CADRE: the Central Aspergillus Data REpository. Nucleic Acids Res. 32 (Database-Issue) (2004)
Paul E. Boardman, Stephen G. Oliver, Simon J. Hubbard
SiteSeer: visualisation and analysis of transcription factor binding sites in nucleotide sequences. Nucleic Acids Res. 31 (13) (2003)
Philip G. K. Reiser, Ross D. King, Douglas B. Kell, Stephen Muggleton, Christopher H. Bryant, Stephen G. Oliver
Developing a Logical Model of Yeast Metabolism. Electron. Trans. Artif. Intell. 5 (B) (2001)
Mike Cornell, Norman W. Paton, Shengli Wu, Carole A. Goble, Crispin J. Miller, Paul Kirby, Karen Eilbeck, Andy Brass, Andrew Hayes, Stephen G. Oliver
GIMS - A Data Warehouse for Storage and Analysis of Genome Sequence and Functional Data. BIBE (2001)
Christopher H. Bryant, Stephen Muggleton, Stephen G. Oliver, Douglas B. Kell, Philip G. K. Reiser, Ross D. King
Combining Inductive Logic Programming, Active Learning and Robotics to Discover the Function of Genes. Electron. Trans. Artif. Intell. 5 (B) (2001)
Norman W. Paton, Shakeel A. Khan, Andrew Hayes, Fouzia Moussouni, Andy Brass, Karen Eilbeck, Carole A. Goble, Simon J. Hubbard, Stephen G. Oliver
Conceptual modelling of genomic information. Bioinform. 16 (6) (2000)