Lincoln Stein

Publication Activity (10 Years)

Years Active: 1993-2022
Publications (10 Years): 20

Top Topics

Scientific Fields

Metabolic Pathways

Top Venues

Nucleic Acids Res.

PLoS Comput. Biol.

Publications

Marc Gillespie, Bijay Jassal, Ralf Stephan, Marija Milacic, Karen Rothfels, Andrea Senff-Ribeiro, Johannes Griss, Cristoffer Sevilla, Lisa Matthews, Chuqiao Gong, Chuan Deng, Thawfeek M. Varusai, Eliot Ragueneau, Yusra Haider, Bruce May, Veronica Shamovsky, Joel Weiser, Timothy Brunson, Nasim Sanati, Liam Beckman, Xiang Shao, Antonio Fabregat, Konstantinos Sidiropoulos, Julieth Murillo, Guilherme Viteri, Justin Cook, Solomon Shorser, Gary Bader, Emek Demir, Chris Sander, Robin Haw, Guanming Wu, Lincoln Stein, Henning Hermjakob, Peter D'Eustachio
The reactome pathway knowledgebase 2022. Nucleic Acids Res. 50 (D1) (2022)
Denis Yuen, Louise Cabansay, Andrew Duncan, Gary Luu, Gregory Hogue, Charles Overbeck, Natalie Perez, Walt Shands, David Steinberg, Chaz Reid, Nneka Olunwa, Richard Hansen, Elizabeth Sheets, Ash O'farrell, Kim Cullion, Brian D. O'Connor, Benedict Paten, Lincoln Stein
The Dockstore: enhancing a community platform for sharing reproducible and accessible computational protocols. Nucleic Acids Res. 49 (Webserver-Issue) (2021)
Elliot A. Hershberg, Garrett Stevens, Colin M. Diesh, Peter Xie, Teresa De Jesus Martinez, Robert Buels, Lincoln Stein, Ian H. Holmes
JBrowseR: an R interface to the JBrowse 2 genome browser. Bioinform. 37 (21) (2021)
Seth Carbon, Eric Douglass, Benjamin M. Good, Deepak R. Unni, Nomi L. Harris, Christopher J. Mungall, Siddartha Basu, Rex L. Chisholm, Robert J. Dodson, Eric Hartline, Petra Fey, Paul D. Thomas, Laurent-Philippe Albou, Dustin Ebert, Michael J. Kesling, Huaiyu Mi, Anushya Muruganujan, Xiaosong Huang, Tremayne Mushayahama, Sandra A. LaBonte, Deborah A. Siegele, Giulia Antonazzo, Helen Attrill, Nick H. Brown, Phani V. Garapati, Steven J. Marygold, Vitor Trovisco, Gilberto dos Santos, Kathleen Falls, Christopher J. Tabone, Pinglei Zhou, Joshua L. Goodman, Victor B. Strelets, Jim Thurmond, Penelope Garmiri, Rizwan Ishtiaq, Milagros Rodríguez-López, Marcio Luis Acencio, Martin Kuiper, Astrid Lægreid, Colin Logie, Ruth C. Lovering, Barbara Kramarz, Shirin C. C. Saverimuttu, Sandra M. Pinheiro, Heather Gunn, Renzhi Su, Katherine E. Thurlow, Marcus C. Chibucos, Michelle G. Giglio, Suvarna Nadendla, James B. Munro, Rebecca C. Jackson, Margaret J. Duesbury, Noemi del-Toro, Birgit H. M. Meldal, Kalpana Paneerselvam, Livia Perfetto, Pablo Porras, Sandra E. Orchard, Anjali Shrivastava, Hsin-Yu Chang, Robert D. Finn, Alex L. Mitchell, Neil D. Rawlings, Lorna J. Richardson, Amaia Sangrador-Vegas, Judith A. Blake, Karen R. Christie, Mary E. Dolan, Harold J. Drabkin, David P. Hill, Li Ni, Dmitry M. Sitnikov, Midori A. Harris, Stephen G. Oliver, Kim Rutherford, Valerie Wood, Jaqueline Hayles, Jürg Bähler, Elizabeth R. Bolton, Jeffrey DePons, Melinda R. Dwinell, G. Thomas Hayman, Mary L. Kaldunski, Anne E. Kwitek, Stanley J. F. Laulederkind, Cody Plasterer, Marek Tutaj, Mahima Vedi, Shur-Jen Wang, Peter D'Eustachio, Lisa Matthews, James P. Balhoff, Suzi A. Aleksander, Michael J. Alexander, J. Michael Cherry, Stacia R. Engel, Felix Gondwe, Kalpana Karra, Stuart R. Miyasato, Robert S. Nash, Matt Simison, Marek S. Skrzypek, Shuai Weng, Edith D. Wong, Marc Feuermann, Pascale Gaudet, Anne Morgat, Erica Bakker, Tanya Z. Berardini, Leonore Reiser, Shabari Subramaniam, Eva Huala, Cecilia N. Arighi, Andrea H. Auchincloss, Kristian B. Axelsen, Ghislaine Argoud-Puy, Alex Bateman, Marie-Claude Blatter, Emmanuel Boutet, Emily Bowler, Lionel Breuza, Alan Bridge, Ramona Britto, Hema Bye-A-Jee, Cristina Casals-Casas, Elisabeth Coudert, Paul Denny, Anne Estreicher, Maria Livia Famiglietti, George E. Georghiou, Arnaud Gos, Nadine Gruaz-Gumowski, Emma Hatton-Ellis, Chantal Hulo, Alexandr Ignatchenko, Florence Jungo, Kati Laiho, Philippe Le Mercier, Damien Lieberherr, Antonia Lock, Yvonne Lussi, Alistair MacDougall, Michele Magrane, Maria Jesus Martin, Patrick Masson, Darren A. Natale, Nevila Hyka-Nouspikel, Ivo Pedruzzi, Lucille Pourcel, Sylvain Poux, Sangya Pundir, Catherine Rivoire, Elena Speretta, Shyamala Sundaram, Nidhi Tyagi, Kate Warner, Rossana Zaru, Cathy H. Wu, Alexander D. Diehl, Juancarlos Chan, Christian A. Grove, Raymond Y. N. Lee, Hans-Michael Müller, Daniela Raciti, Kimberly Van Auken, Paul W. Sternberg, Matthew Berriman, Michael Paulini, Kevin L. Howe, Sibyl Gao, Adam Wright, Lincoln Stein, Douglas G. Howe, Sabrina Toro, Monte Westerfield, Pankaj Jaiswal, Laurel Cooper, Justin Elser
The Gene Ontology resource: enriching a GOld mine. Nucleic Acids Res. 49 (Database-Issue) (2021)
Bijay Jassal, Lisa Matthews, Guilherme Viteri, Chuqiao Gong, Pascual Lorente, Antonio Fabregat, Konstantinos Sidiropoulos, Justin Cook, Marc Gillespie, Robin Haw, Fred Loney, Bruce May, Marija Milacic, Karen Rothfels, Cristoffer Sevilla, Veronica Shamovsky, Solomon Shorser, Thawfeek M. Varusai, Joel Weiser, Guanming Wu, Lincoln Stein, Henning Hermjakob, Peter D'Eustachio
The reactome pathway knowledgebase. Nucleic Acids Res. 48 (Database-Issue) (2020)
Todd W. Harris, Valerio Arnaboldi, Scott Cain, Juancarlos Chan, Wen J. Chen, Jae-Hyoung Cho, Paul Davis, Sibyl Gao, Christian A. Grove, Ranjana Kishore, Raymond Y. N. Lee, Hans-Michael Müller, Cecilia Nakamura, Paulo A. S. Nuin, Michael Paulini, Daniela Raciti, Faye Rodgers, Matthew Russell, Gary Schindelman, Kimberly Van Auken, Qinghua Wang, Gary Williams, Adam Wright, Karen Yook, Kevin L. Howe, Tim Schedl, Lincoln Stein, Paul W. Sternberg
WormBase: a modern Model Organism Information Resource. Nucleic Acids Res. 48 (Database-Issue) (2020)
Eric Yao, Robert Buels, Lincoln Stein, Taner Z. Sen, Ian H. Holmes
JBrowse Connect: A server API to connect JBrowse instances and users. PLoS Comput. Biol. 16 (8) (2020)
Sushma Naithani, Parul Gupta, Justin Preece, Peter D'Eustachio, Justin Elser, Priyanka Garg, Daemon A. Dikeman, Jason Kiff, Justin Cook, Andrew Olson, Sharon Wei, Marcela K. Tello-Ruiz, Antonio Fabregat Mundo, Alfonso Muñoz-Pomer Fuentes, Suhaib Mohammed, Tiejun Cheng, Evan Bolton, Irene Papatheodorou, Lincoln Stein, Doreen Ware, Pankaj Jaiswal
Plant Reactome: a knowledgebase and resource for comparative pathway analysis. Nucleic Acids Res. 48 (Database-Issue) (2020)
Guilherme Viteri, Lisa Matthews, Thawfeek M. Varusai, Marc Gillespie, Marija Milacic, Justin Cook, Joel Weiser, Solomon Shorser, Konstantinos Sidiropoulos, Antonio Fabregat, Robin Haw, Guanming Wu, Lincoln Stein, Peter D'Eustachio, Henning Hermjakob
Reactome and ORCID - fine-grained credit attribution for community curation. Database J. Biol. Databases Curation 2019 (2019)
Raymond Y. N. Lee, Kevin L. Howe, Todd W. Harris, Valerio Arnaboldi, Scott Cain, Juancarlos Chan, Wen J. Chen, Paul Davis, Sibyl Gao, Christian A. Grove, Ranjana Kishore, Hans-Michael Müller, Cecilia Nakamura, Paulo A. S. Nuin, Michael Paulini, Daniela Raciti, Faye Rodgers, Matthew Russell, Gary Schindelman, Mary Ann Tuli, Kimberly Van Auken, Qinghua Wang, Gary Williams, Adam Wright, Karen Yook, Matthew Berriman, Paul J. Kersey, Tim Schedl, Lincoln Stein, Paul W. Sternberg
WormBase 2017: molting into a new stage. Nucleic Acids Res. 46 (Database-Issue) (2018)
Antonio Fabregat, Florian Korninger, Guilherme Viteri, Konstantinos Sidiropoulos, Pablo Marín-García, Peipei Ping, Guanming Wu, Lincoln Stein, Peter D'Eustachio, Henning Hermjakob
Reactome graph database: Efficient access to complex pathway data. PLoS Comput. Biol. 14 (1) (2018)
Antonio Fabregat, Steven Jupe, Lisa Matthews, Konstantinos Sidiropoulos, Marc Gillespie, Phani V. Garapati, Robin Haw, Bijay Jassal, Florian Korninger, Bruce May, Marija Milacic, Corina Duenas, Karen Rothfels, Cristoffer Sevilla, Veronica Shamovsky, Solomon Shorser, Thawfeek M. Varusai, Guilherme Viteri, Joel Weiser, Guanming Wu, Lincoln Stein, Henning Hermjakob, Peter D'Eustachio
The Reactome Pathway Knowledgebase. Nucleic Acids Res. 46 (Database-Issue) (2018)
Antonio Fabregat, Konstantinos Sidiropoulos, Guilherme Viteri, Pablo Marín-García, Peipei Ping, Lincoln Stein, Peter D'Eustachio, Henning Hermjakob
Reactome diagram viewer: data structures and strategies to boost performance. Bioinform. 34 (7) (2018)
Antonio Fabregat, Konstantinos Sidiropoulos, Guilherme Viteri, Oscar Forner-Martinez, Pablo Marín-García, Vicente Arnau, Peter D'Eustachio, Lincoln Stein, Henning Hermjakob
Reactome pathway analysis: a high-performance in-memory approach. BMC Bioinform. 18 (1) (2017)
Konstantinos Sidiropoulos, Guilherme Viteri, Cristoffer Sevilla, Steven Jupe, Marissa Webber, Marija Orlic-Milacic, Bijay Jassal, Bruce May, Veronica Shamovsky, Corina Duenas, Karen Rothfels, Lisa Matthews, Heeyeon Song, Lincoln Stein, Robin Haw, Peter D'Eustachio, Peipei Ping, Henning Hermjakob, Antonio Fabregat
Reactome enhanced pathway visualization. Bioinform. 33 (21) (2017)
Brian D. O'Connor, Denis Yuen, Vincent Chung, Andrew G. Duncan, Xiangkun Liu, Janice Patricia, Benedict Paten, Lincoln Stein, Vincent Ferretti
The Dockstore: enabling modular, community-focused sharing of Docker-based genomics tools and workflows. F1000Research 6 (2017)
Antonio Fabregat, Konstantinos Sidiropoulos, Phani V. Garapati, Marc Gillespie, Kerstin Hausmann, Robin Haw, Bijay Jassal, Steven Jupe, Florian Korninger, Sheldon J. McKay, Lisa Matthews, Bruce May, Marija Milacic, Karen Rothfels, Veronica Shamovsky, Marissa Webber, Joel Weiser, Mark Williams, Guanming Wu, Lincoln Stein, Henning Hermjakob, Peter D'Eustachio
The Reactome pathway Knowledgebase. Nucleic Acids Res. 44 (Database-Issue) (2016)
Kevin L. Howe, Bruce J. Bolt, Scott Cain, Juancarlos Chan, Wen J. Chen, Paul Davis, James Done, Thomas A. Down, Sibyl Gao, Christian A. Grove, Todd W. Harris, Ranjana Kishore, Raymond Y. N. Lee, Jane Lomax, Yuling Li, Hans-Michael Müller, Cecilia Nakamura, Paulo A. S. Nuin, Michael Paulini, Daniela Raciti, Gary Schindelman, Eleanor Stanley, Mary Ann Tuli, Kimberly Van Auken, Daniel Wang, Xiaodong Wang, Gary Williams, Adam Wright, Karen Yook, Matthew Berriman, Paul J. Kersey, Tim Schedl, Lincoln Stein, Paul W. Sternberg
WormBase 2016: expanding to enable helminth genomic research. Nucleic Acids Res. 44 (Database-Issue) (2016)
Marcela K. Tello-Ruiz, Joshua C. Stein, Sharon Wei, Justin Preece, Andrew Olson, Sushma Naithani, Vindhya Amarasinghe, Palitha Dharmawardhana, Yinping Jiao, Joseph Mulvaney, Sunita Kumari, Kapeel Chougule, Justin Elser, Bo Wang, James Thomason, Daniel M. Bolser, Arnaud Kerhornou, Brandon Walts, Nuno A. Fonseca, Laura Huerta, Maria Keays, Y. Amy Tang, Helen E. Parkinson, Antonio Fabregat, Sheldon J. McKay, Joel Weiser, Peter D'Eustachio, Lincoln Stein, Robert Petryszak, Paul J. Kersey, Pankaj Jaiswal, Doreen Ware
Gramene 2016: comparative plant genomics and pathway resources. Nucleic Acids Res. 44 (Database-Issue) (2016)
Liya Wang, Doreen Ware, Carol Lushbough, Nirav C. Merchant, Lincoln Stein
A genome-wide association study platform built on iPlant cyber-infrastructure. Concurr. Comput. Pract. Exp. 27 (2) (2015)
Guanming Wu, Eric T. Dawson, Adrian Duong, Robin Haw, Lincoln Stein
ReactomeFIViz: the Reactome FI Cytoscape app for pathway and network-based data analysis. F1000Research 3 (2014)
Amit G. Deshwar, Shankar Vembu, Christina K. Yung, Gun Ho Jang, Lincoln Stein, Quaid Morris
Reconstructing subclonal composition and evolution from whole genome sequencing of tumors. CoRR (2014)
Todd W. Harris, Joachim Baran, Tamberlyn Bieri, Abigail Cabunoc, Juancarlos Chan, Wen J. Chen, Paul Davis, James Done, Christian A. Grove, Kevin L. Howe, Ranjana Kishore, Raymond Y. N. Lee, Yuling Li, Hans-Michael Müller, Cecilia Nakamura, Philip Ozersky, Michael Paulini, Daniela Raciti, Gary Schindelman, Mary Ann Tuli, Kimberly Van Auken, Daniel Wang, Xiaodong Wang, Gary Williams, J. D. Wong, Karen Yook, Tim Schedl, Jonathan Hodgkin, Matthew Berriman, Paul J. Kersey, John Spieth, Lincoln Stein, Paul W. Sternberg
WormBase 2014: new views of curated biology. Nucleic Acids Res. 42 (Database-Issue) (2014)
Wei Jiao, Shankar Vembu, Amit G. Deshwar, Lincoln Stein, Quaid Morris
Inferring clonal evolution of tumors from single nucleotide somatic mutations. BMC Bioinform. 15 (2014)
David Croft, Antonio Fabregat Mundo, Robin Haw, Marija Milacic, Joel Weiser, Guanming Wu, Michael Caudy, Phani V. Garapati, Marc Gillespie, Maulik R. Kamdar, Bijay Jassal, Steven Jupe, Lisa Matthews, Bruce May, Stanislav Palatnik, Karen Rothfels, Veronica Shamovsky, Heeyeon Song, Mark Williams, Ewan Birney, Henning Hermjakob, Lincoln Stein, Peter D'Eustachio
The Reactome pathway knowledgebase. Nucleic Acids Res. 42 (Database-Issue) (2014)
Marcela K. Monaco, Joshua C. Stein, Sushma Naithani, Sharon Wei, Palitha Dharmawardhana, Sunita Kumari, Vindhya Amarasinghe, Ken Youens-Clark, James Thomason, Justin Preece, Shiran Pasternak, Andrew Olson, Yinping Jiao, Zhenyuan Lu, Daniel M. Bolser, Arnaud Kerhornou, Daniel M. Staines, Brandon Walts, Guanming Wu, Peter D'Eustachio, Robin Haw, David Croft, Paul J. Kersey, Lincoln Stein, Pankaj Jaiswal, Doreen Ware
Gramene 2013: comparative plant genomics resources. Nucleic Acids Res. 42 (Database-Issue) (2014)
Karen Yook, Todd W. Harris, Tamberlyn Bieri, Abigail Cabunoc, Juancarlos Chan, Wen J. Chen, Paul Davis, Norie De La Cruz, Adrian Duong, Ruihua Fang, Uma Ganesan, Christian A. Grove, Kevin L. Howe, Snehalata Kadam, Ranjana Kishore, Raymond Y. N. Lee, Yuling Li, Hans-Michael Müller, Cecilia Nakamura, Bill Nash, Philip Ozersky, Michael Paulini, Daniela Raciti, Arun Rangarajan, Gary Schindelman, Xiaoqi Shi, Erich M. Schwarz, Mary Ann Tuli, Kimberly Van Auken, Daniel Wang, Xiaodong Wang, Gary Williams, Jonathan Hodgkin, Matthew Berriman, Richard Durbin, Paul J. Kersey, John Spieth, Lincoln Stein, Paul W. Sternberg
WormBase 2012: more genomes, more data, new website. Nucleic Acids Res. 40 (Database-Issue) (2012)
Wei Jiao, Shankar Vembu, Amit G. Deshwar, Lincoln Stein, Quaid Morris
Modeling the Clonal Evolution of Cancer from Next Generation Sequencing Data CoRR (2012)
Xin Feng, Robert Grossman, Lincoln Stein
PeakRanger: A cloud-enabled peak caller for ChIP-seq data. BMC Bioinform. 12 (2011)
David Croft, Gavin O'Kelly, Guanming Wu, Robin Haw, Marc Gillespie, Lisa Matthews, Michael Caudy, Phani V. Garapati, Gopal Gopinath, Bijay Jassal, Steven Jupe, Irina Kalatskaya, Shahana Mahajan, Bruce May, Nelson Ndegwa, Esther Schmidt, Veronica Shamovsky, Christina K. Yung, Ewan Birney, Henning Hermjakob, Peter D'Eustachio, Lincoln Stein
Reactome: a database of reactions, pathways and biological processes. Nucleic Acids Res. 39 (Database-Issue) (2011)
Bijay Jassal, Steven Jupe, Michael Caudy, Ewan Birney, Lincoln Stein, Henning Hermjakob, Peter D'Eustachio
The systematic annotation of the three main GPCR families in Reactome. Database J. Biol. Databases Curation 2010 (2010)
Lisa Matthews, Gopal Gopinath, Marc Gillespie, Michael Caudy, David Croft, Bernard de Bono, Phani V. Garapati, Jill Hemish, Henning Hermjakob, Bijay Jassal, Alexander Kanapin, Suzanna Lewis, Shahana Mahajan, Bruce May, Esther Schmidt, Imre Vastrik, Guanming Wu, Ewan Birney, Lincoln Stein, Peter D'Eustachio
Reactome knowledgebase of human biological pathways and processes. Nucleic Acids Res. 37 (Database-Issue) (2009)
Ken Youens-Clark, Benjamin Faga, Immanuel Yap, Lincoln Stein, Doreen Ware
CMap 1.01: a comparative mapping application for the Internet. Bioinform. 25 (22) (2009)
Junjian Ni, Anuradha Pujar, Ken Youens-Clark, Immanuel Yap, Pankaj Jaiswal, Isaak Y. Tecle, Chih-Wei Tung, Liya Ren, William Spooner, Xuehong Wei, Shuly Avraham, Doreen Ware, Lincoln Stein, Susan McCouch
Gramene QTL database: development, content and applications. Database J. Biol. Databases Curation 2009 (2009)
Shulamit Avraham, Chih-Wei Tung, Katica Ilic, Pankaj Jaiswal, Elizabeth A. Kellogg, Susan McCouch, Anuradha Pujar, Leonore Reiser, Seung Yon Rhee, Martin M. Sachs, Mary L. Schaeffer, Lincoln Stein, Peter F. Stevens, Leszek Vincent, Felipe Zapata, Doreen Ware
The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations. Nucleic Acids Res. 36 (Database-Issue) (2008)
Chengzhi Liang, Pankaj Jaiswal, Claire Hebbard, Shuly Avraham, Edward S. Buckler, Terry M. Casstevens, Bonnie L. Hurwitz, Susan McCouch, Junjian Ni, Anuradha Pujar, Dean Ravenscroft, Liya Ren, William Spooner, Isaak Y. Tecle, Jim Thomason, Chih-Wei Tung, Xuehong Wei, Immanuel Yap, Ken Youens-Clark, Doreen Ware, Lincoln Stein
Gramene: a growing plant comparative genomics resource. Nucleic Acids Res. 36 (Database-Issue) (2008)
Payan Canaran, Edward S. Buckler, Jeffrey Glaubitz, Lincoln Stein, Qi Sun, Wei Zhao, Doreen Ware
Panzea: an update on new content and features. Nucleic Acids Res. 36 (Database-Issue) (2008)
Bernard de Bono, Imre Vastrik, Peter D'Eustachio, Esther Schmidt, Gopal Gopinath, David Croft, Marc Gillespie, Bijay Jassal, Suzanna Lewis, Lisa Matthews, Guanming Wu, Ewan Birney, Lincoln Stein
Reactome: An integrated expert model of human molecular processes and access toolkit. J. Integr. Bioinform. 4 (3) (2007)
Esther Schmidt, Ewan Birney, David Croft, Bernard de Bono, Peter D'Eustachio, Marc Gillespie, Gopal Gopinath, Bijay Jassal, Suzanna Lewis, Lisa Matthews, Lincoln Stein, Imre Vastrik, Guanming Wu
Reactome - A Knowledgebase of Biological Pathways. OTM Workshops (1) (2006)
Payan Canaran, Lincoln Stein, Doreen Ware
Look-Align: an interactive web-based multiple sequence alignment viewer with polymorphism analysis support. Bioinform. 22 (7) (2006)
Pankaj Jaiswal, Junjian Ni, Immanuel Yap, Doreen Ware, William Spooner, Ken Youens-Clark, Liya Ren, Chengzhi Liang, Wei Zhao, Kiran Ratnapu, Benjamin Faga, Payan Canaran, Molly Fogleman, Claire Hebbard, Shuly Avraham, Steven Schmidt, Terry M. Casstevens, Edward S. Buckler, Lincoln Stein, Susan McCouch
Gramene: a bird's eye view of cereal genomes. Nucleic Acids Res. 34 (Database-Issue) (2006)
Wei Zhao, Payan Canaran, Rebecca Jurkuta, Theresa Fulton, Jeffrey Glaubitz, Edward S. Buckler, John Doebley, Brandon S. Gaut, Major Goodman, Jim Holland, Stephen Kresovich, Michael D. McMullen, Lincoln Stein, Doreen Ware
Panzea: a database and resource for molecular and functional diversity in the maize genome. Nucleic Acids Res. 34 (Database-Issue) (2006)
G. Joshi-Tope, Marc Gillespie, Imre Vastrik, Peter D'Eustachio, Esther Schmidt, Bernard de Bono, Bijay Jassal, G. R. Gopinath, G. R. Wu, Lisa Matthews, Suzanna Lewis, Ewan Birney, Lincoln Stein
Reactome: a knowledgebase of biological pathways. Nucleic Acids Res. 33 (Database-Issue) (2005)
Xiaokang Pan, Lincoln Stein, Volker Brendel
SynBrowse: a synteny browser for comparative sequence analysis. Bioinform. 21 (17) (2005)
Phillip W. Lord, Sean Bechhofer, Mark D. Wilkinson, Gary S. Schiltz, Damian Gessler, Duncan Hull, Carole A. Goble, Lincoln Stein
Applying Semantic Web Services to Bioinformatics: Experiences Gained, Lessons Learnt. ISWC (2004)
Christopher Maher, Marja Timmermans, Lincoln Stein, Doreen Ware
Identifying MicroRNAs in Plant Genomes. CSB (2004)
Gudmundur A. Thorisson, Lincoln Stein
The SNP Consortium website: past, present and future. Nucleic Acids Res. 31 (1) (2003)
Doreen Ware, Pankaj Jaiswal, Junjian Ni, Xiaokang Pan, Kuan Y. Chang, Kenneth Clark, Leonid Teytelman, Steven Schmidt, Wei Zhao, Samuel Cartinhour, Susan McCouch, Lincoln Stein
Gramene: a resource for comparative grass genomics. Nucleic Acids Res. 30 (1) (2002)
Lincoln Stein, Paul W. Sternberg, Richard Durbin, Jean Thierry-Mieg, John Spieth
WormBase: network access to the genome and biology of Caenorhabditis elegans. Nucleic Acids Res. 29 (1) (2001)
Robin D. Dowell, Rodney M. Jokerst, Allen Day, Sean R. Eddy, Lincoln Stein
The Distributed Annotation System. BMC Bioinform. 2 (2001)
Lincoln Stein
SBOX: Put CGI Scripts in a Box. USENIX Annual Technical Conference, General Track (1999)
Nathan Goodman, Steve Rozen, Lincoln Stein, A. G. Smith
The LabBase system for data management in large scale biology research laboratories. Bioinform. 14 (7) (1998)
Nathan Goodman, Steve Rozen, Lincoln Stein
The LabFlow System for Workflow Management in Large Scale Biology Research Laboratories. ISMB (1998)
Lincoln Stein
Exploring CGI with Perl. World Wide Web J. 2 (1997)
Donna K. Slonim, Leonid Kruglyak, Lincoln Stein, Eric S. Lander
Building human genome maps with radiation hybrids. RECOMB (1997)
Donna K. Slonim, Leonid Kruglyak, Lincoln Stein, Eric S. Lander
Building Human Genome Maps with Radiation Hybrids. J. Comput. Biol. 4 (4) (1997)
Lincoln Stein, Andre Marquis, Robert Dredge, Mary Pat Reeve, Mark Daly, Steve Rozen, Nathan Goodman
Splicing UNIX into a Genome Mapping Laboratory. USENIX Summer (1994)
Steve Rozen, Lincoln Stein, Nathan Goodman
Constructing a Domain-Specific DBMS using a Persistent Object System. POS (1994)
Nathan Goodman, Steve Rozen, Lincoln Stein
Building a Laboratory Information System Around a C++-Based Object-Oriented DBMS. VLDB (1994)
Nathan Goodman, Steve Rozen, Lincoln Stein
Requirements for a Deductive Query Language in the MapBase Genome-Mapping Database. Workshop on Programming with Logic Databases (Informal Proceedings), ILPS (1993)
Nathan Goodman, Steve Rozen, Lincoln Stein
Requirements for a Deductive Query Language in a Genome-Mapping Database. Workshop on Programming with Logic Databases (Book), ILPS (1993)