Robin D. Dowell

Publication Activity (10 Years)

Years Active: 2001-2024
Publications (10 Years): 6

Top Topics

Internal And External

Generative Model

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Zachary L. Maas, Robin D. Dowell
Internal and external normalization of nascent RNA sequencing run-on experiments. BMC Bioinform. 25 (1) (2024)
Jacob T. Stanley, Alison R. Gilchrist, Alex C. Stabell, Mary A. Allen, Sara L. Sawyer, Robin D. Dowell
Two-stage ML Classifier for Identifying Host Protein Targets of the Dengue Protease. PSB (2020)
Joseph Azofeifa, Robin D. Dowell
A generative model for the behavior of RNA polymerase. Bioinform. 33 (2) (2017)
Joseph Azofeifa, Mary A. Allen, Manuel E. Lladser, Robin D. Dowell
An Annotation Agnostic Algorithm for Detecting Nascent RNA Transcripts in GRO-Seq. IEEE ACM Trans. Comput. Biol. Bioinform. 14 (5) (2017)
Pratyaydipta Rudra, W. Jenny Shi, Brian Vestal, Pamela H. Russell, Aaron Odell, Robin D. Dowell, Richard Radcliffe, Laura M. Saba, Katerina Kechris
Model based heritability scores for high-throughput sequencing data. BMC Bioinform. 18 (1) (2017)
David A. Knox, Robin D. Dowell
A Modeling Framework for Generation of Positional and Temporal Simulations of Transcriptional Regulation. IEEE ACM Trans. Comput. Biol. Bioinform. 13 (3) (2016)
Daniel Malmer, Phillip A. Richmond, Aaron Odell, Richard Radcliffe, Robin D. Dowell
Inferring ancestry in mouse genomes using a hidden Markov model. BCB (2014)
Joseph Azofeifa, Mary A. Allen, Manuel E. Lladser, Robin D. Dowell
FStitch: a fast and simple algorithm for detecting nascent RNA transcripts. BCB (2014)
Timothy Danford, Robin D. Dowell, Sudeep Agarwala, Paula Grisafi, Gerald Fink, David K. Gifford
Discovering Regulatory Overlapping RNA Transcripts. J. Comput. Biol. 18 (3) (2011)
Timothy Danford, Robin D. Dowell, Sudeep Agarwala, Paula Grisafi, Gerald Fink, David K. Gifford
Discovering Regulatory Overlapping RNA Transcripts. RECOMB (2010)
Georg K. Gerber, Robin D. Dowell, Tommi S. Jaakkola, David K. Gifford
Automated Discovery of Functional Generality of Human Gene Expression Programs. PLoS Comput. Biol. 3 (8) (2007)
Robin D. Dowell, Sean R. Eddy
Efficient pairwise RNA structure prediction and alignment using sequence alignment constraints. BMC Bioinform. 7 (2006)
Robin D. Dowell, Sean R. Eddy
Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction. BMC Bioinform. 5 (2004)
Robin D. Dowell, Rodney M. Jokerst, Allen Day, Sean R. Eddy, Lincoln Stein
The Distributed Annotation System. BMC Bioinform. 2 (2001)