Efficient pairwise RNA structure prediction and alignment using sequence alignment constraints.
Robin D. DowellSean R. EddyPublished in: BMC Bioinform. (2006)
Keyphrases
- sequence alignment
- pairwise
- protein sequences
- multiple sequence alignments
- dynamic programming
- multiple alignment
- phylogenetic analysis
- multiple sequence alignment
- protein classification
- prediction accuracy
- binding sites
- pairwise constraints
- protein structure prediction
- psi blast
- markov random field
- semi supervised
- computational methods
- similarity measure