An Annotation Agnostic Algorithm for Detecting Nascent RNA Transcripts in GRO-Seq.
Joseph AzofeifaMary A. AllenManuel E. LladserRobin D. DowellPublished in: IEEE ACM Trans. Comput. Biol. Bioinform. (2017)
Keyphrases
- learning algorithm
- times faster
- dynamic programming
- theoretical analysis
- experimental evaluation
- np hard
- detection algorithm
- ant colony optimization
- high accuracy
- worst case
- k means
- computational complexity
- computational cost
- significant improvement
- optimal solution
- convergence rate
- tree structure
- neural network
- optimization algorithm
- expectation maximization
- particle swarm optimization
- hidden markov models
- metadata
- genetic algorithm