Katerina Kechris

Publication Activity (10 Years)

Years Active: 2008-2022
Publications (10 Years): 10

Top Topics

Transcriptional Regulatory

Missing Data Imputation

Mass Spectrometry

Repeated Measures

Top Venues

PLoS Comput. Biol.

Genom. Proteom. Bioinform.

Publications

Jonathan P. Dekermanjian, Elin Shaddox, Debmalya Nandy, Debashis Ghosh, Katerina Kechris
Mechanism-aware imputation: a two-step approach in handling missing values in metabolomics. BMC Bioinform. 23 (1) (2022)
Charlie M. Carpenter, Daniel N. Frank, Kayla Williamson, Jaron Arbet, Brandie D. Wagner, Katerina Kechris, Miranda Kroehl
tidyMicro: a pipeline for microbiome data analysis and visualization using the tidyverse in R. BMC Bioinform. 22 (1) (2021)
Charlie M. Carpenter, Weiming Zhang, Lucas Gillenwater, Cameron Severn, Tusharkanti Ghosh, Russell Bowler, Katerina Kechris, Debashis Ghosh
PaIRKAT: A pathway integrated regression-based kernel association test with applications to metabolomics and COPD phenotypes. PLoS Comput. Biol. 17 (10) (2021)
Tusharkanti Ghosh, Daisy Philtron, Weiming Zhang, Katerina Kechris, Debashis Ghosh
Reproducibility of mass spectrometry based metabolomics data. BMC Bioinform. 22 (1) (2021)
Brian Vestal, Camille M. Moore, Elizabeth Wynn, Laura M. Saba, Tasha Fingerlin, Katerina Kechris
MCMSeq: Bayesian hierarchical modeling of clustered and repeated measures RNA sequencing experiments. BMC Bioinform. 21 (1) (2020)
W. Jenny Shi, Yonghua Zhuang, Pamela H. Russell, Brian Hobbs, Margaret M. Parker, Peter J. Castaldi, Pratyaydipta Rudra, Brian Vestal, Craig P. Hersh, Laura M. Saba, Katerina Kechris
Unsupervised discovery of phenotype-specific multi-omics networks. Bioinform. 35 (21) (2019)
Yafei Lyu, Lingzhou Xue, Feipeng Zhang, Hillary Koch, Laura M. Saba, Katerina Kechris, Qunhua Li
Condition-adaptive fused graphical lasso (CFGL): An adaptive procedure for inferring condition-specific gene co-expression network. PLoS Comput. Biol. 14 (9) (2018)
Charlotte Siska, Russell Bowler, Katerina Kechris
The discordant method: a novel approach for differential correlation. Bioinform. 33 (1) (2017)
Pratyaydipta Rudra, W. Jenny Shi, Brian Vestal, Pamela H. Russell, Aaron Odell, Robin D. Dowell, Richard Radcliffe, Laura M. Saba, Katerina Kechris
Model based heritability scores for high-throughput sequencing data. BMC Bioinform. 18 (1) (2017)
Charlotte Siska, Russell Bowler, Katerina Kechris
The discordant method: a novel approach for differential correlation. Bioinform. 32 (5) (2016)
Grant Hughes, Charmion Cruickshank-Quinn, Richard Reisdorph, Sharon Lutz, Irina Petrache, Nichole Reisdorph, Russell Bowler, Katerina Kechris
MSPrep - Summarization, normalization and diagnostics for processing of mass spectrometry-based metabolomic data. Bioinform. 30 (1) (2014)
Nichole Reisdorph, Robert Stearman, Katerina Kechris, Tzu Lip Phang, Richard Reisdorph, Jessica Prenni, David J. Erle, Christopher Coldren, Kevin L. Schey, Alexey I. Nesvizhskii, Marc Geraci
Hands-on Workshops as An Effective Means of Learning Advanced Technologies Including Genomics, Proteomics and Bioinformatics. Genom. Proteom. Bioinform. 11 (6) (2013)
Katerina Kechris, Hao Li
c-REDUCE: Incorporating sequence conservation to detect motifs that correlate with expression. BMC Bioinform. 9 (2008)