FStitch: a fast and simple algorithm for detecting nascent RNA transcripts.
Joseph AzofeifaMary A. AllenManuel E. LladserRobin D. DowellPublished in: BCB (2014)
Keyphrases
- detection algorithm
- high accuracy
- optimal solution
- learning algorithm
- experimental evaluation
- dynamic programming
- k means
- cost function
- times faster
- expectation maximization
- theoretical analysis
- improved algorithm
- multi objective
- search space
- computational complexity
- matching algorithm
- ant colony optimization
- computationally efficient
- computational cost
- particle swarm optimization
- probabilistic model
- bayesian networks
- similarity measure