Benjamin M. Good

Publication Activity (10 Years)

Years Active: 1999-2021
Publications (10 Years): 24

Top Topics

Biological Knowledge

Medline Abstracts

Top Venues

Database J. Biol. Databases Curation

Publications

Benjamin M. Good, Kimberly Van Auken, David P. Hill, Huaiyu Mi, Seth Carbon, James P. Balhoff, Laurent-Philippe Albou, Paul D. Thomas, Christopher J. Mungall, Judith A. Blake, Peter D'Eustachio
Reactome and the Gene Ontology: digital convergence of data resources. Bioinform. 37 (19) (2021)
Justin T. Reese, Deepak R. Unni, Tiffany J. Callahan, Luca Cappelletti, Vida Ravanmehr, Seth Carbon, Kent A. Shefchek, Benjamin M. Good, James P. Balhoff, Tommaso Fontana, Hannah Blau, Nicolas Matentzoglu, Nomi L. Harris, Monica C. Munoz-Torres, Melissa A. Haendel, Peter N. Robinson, Marcin P. Joachimiak, Christopher J. Mungall
KG-COVID-19: A Framework to Produce Customized Knowledge Graphs for COVID-19 Response. Patterns 2 (1) (2021)
Seth Carbon, Eric Douglass, Benjamin M. Good, Deepak R. Unni, Nomi L. Harris, Christopher J. Mungall, Siddartha Basu, Rex L. Chisholm, Robert J. Dodson, Eric Hartline, Petra Fey, Paul D. Thomas, Laurent-Philippe Albou, Dustin Ebert, Michael J. Kesling, Huaiyu Mi, Anushya Muruganujan, Xiaosong Huang, Tremayne Mushayahama, Sandra A. LaBonte, Deborah A. Siegele, Giulia Antonazzo, Helen Attrill, Nick H. Brown, Phani V. Garapati, Steven J. Marygold, Vitor Trovisco, Gilberto dos Santos, Kathleen Falls, Christopher J. Tabone, Pinglei Zhou, Joshua L. Goodman, Victor B. Strelets, Jim Thurmond, Penelope Garmiri, Rizwan Ishtiaq, Milagros Rodríguez-López, Marcio Luis Acencio, Martin Kuiper, Astrid Lægreid, Colin Logie, Ruth C. Lovering, Barbara Kramarz, Shirin C. C. Saverimuttu, Sandra M. Pinheiro, Heather Gunn, Renzhi Su, Katherine E. Thurlow, Marcus C. Chibucos, Michelle G. Giglio, Suvarna Nadendla, James B. Munro, Rebecca C. Jackson, Margaret J. Duesbury, Noemi del-Toro, Birgit H. M. Meldal, Kalpana Paneerselvam, Livia Perfetto, Pablo Porras, Sandra E. Orchard, Anjali Shrivastava, Hsin-Yu Chang, Robert D. Finn, Alex L. Mitchell, Neil D. Rawlings, Lorna J. Richardson, Amaia Sangrador-Vegas, Judith A. Blake, Karen R. Christie, Mary E. Dolan, Harold J. Drabkin, David P. Hill, Li Ni, Dmitry M. Sitnikov, Midori A. Harris, Stephen G. Oliver, Kim Rutherford, Valerie Wood, Jaqueline Hayles, Jürg Bähler, Elizabeth R. Bolton, Jeffrey DePons, Melinda R. Dwinell, G. Thomas Hayman, Mary L. Kaldunski, Anne E. Kwitek, Stanley J. F. Laulederkind, Cody Plasterer, Marek Tutaj, Mahima Vedi, Shur-Jen Wang, Peter D'Eustachio, Lisa Matthews, James P. Balhoff, Suzi A. Aleksander, Michael J. Alexander, J. Michael Cherry, Stacia R. Engel, Felix Gondwe, Kalpana Karra, Stuart R. Miyasato, Robert S. Nash, Matt Simison, Marek S. Skrzypek, Shuai Weng, Edith D. Wong, Marc Feuermann, Pascale Gaudet, Anne Morgat, Erica Bakker, Tanya Z. Berardini, Leonore Reiser, Shabari Subramaniam, Eva Huala, Cecilia N. Arighi, Andrea H. Auchincloss, Kristian B. Axelsen, Ghislaine Argoud-Puy, Alex Bateman, Marie-Claude Blatter, Emmanuel Boutet, Emily Bowler, Lionel Breuza, Alan Bridge, Ramona Britto, Hema Bye-A-Jee, Cristina Casals-Casas, Elisabeth Coudert, Paul Denny, Anne Estreicher, Maria Livia Famiglietti, George E. Georghiou, Arnaud Gos, Nadine Gruaz-Gumowski, Emma Hatton-Ellis, Chantal Hulo, Alexandr Ignatchenko, Florence Jungo, Kati Laiho, Philippe Le Mercier, Damien Lieberherr, Antonia Lock, Yvonne Lussi, Alistair MacDougall, Michele Magrane, Maria Jesus Martin, Patrick Masson, Darren A. Natale, Nevila Hyka-Nouspikel, Ivo Pedruzzi, Lucille Pourcel, Sylvain Poux, Sangya Pundir, Catherine Rivoire, Elena Speretta, Shyamala Sundaram, Nidhi Tyagi, Kate Warner, Rossana Zaru, Cathy H. Wu, Alexander D. Diehl, Juancarlos Chan, Christian A. Grove, Raymond Y. N. Lee, Hans-Michael Müller, Daniela Raciti, Kimberly Van Auken, Paul W. Sternberg, Matthew Berriman, Michael Paulini, Kevin L. Howe, Sibyl Gao, Adam Wright, Lincoln Stein, Douglas G. Howe, Sabrina Toro, Monte Westerfield, Pankaj Jaiswal, Laurel Cooper, Justin Elser
The Gene Ontology resource: enriching a GOld mine. Nucleic Acids Res. 49 (Database-Issue) (2021)
Ginger Tsueng, Max Nanis, Jennifer T. Fouquier, Michael Mayers, Benjamin M. Good, Andrew I. Su
Applying citizen science to gene, drug and disease relationship extraction from biomedical abstracts. Bioinform. 36 (4) (2020)
Núria Queralt-Rosinach, Gregory S. Stupp, Tong Shu Li, Michael Mayers, Maureen E. Hoatlin, Matthew Might, Benjamin M. Good, Andrew I. Su
Structured reviews for data and knowledge-driven research. Database J. Biol. Databases Curation 2020 (2020)
Tim E. Putman, Kevin Hybiske, Derek Jow, Cyrus Afrasiabi, Sebastien Lelong, Marco Alvarado Cano, Gregory S. Stupp, Andra Waagmeester, Benjamin M. Good, Chunlei Wu, Andrew I. Su
ChlamBase: a curated model organism database for the Chlamydia research community. Database J. Biol. Databases Curation 2019 (2019)
Ginger Tsueng, Max Nanis, Jennifer T. Fouquier, Michael Mayers, Benjamin M. Good, Andrew I. Su
Applying Citizen Science to Gene, Drug, Disease Relationship Extraction from Biomedical Abstracts. AKBC (2019)
James P. Balhoff, Benjamin M. Good, Seth Carbon, Chris Mungall
Arachne: an OWL RL Reasoner Applied to Gene Ontology Causal Activity Models (and Beyond). ISWC (P&D/Industry/BlueSky) (2018)
Tim E. Putman, Sebastien Lelong, Sebastian Burgstaller-Muehlbacher, Andra Waagmeester, Colin M. Diesh, Nathan A. Dunn, Monica C. Munoz-Torres, Gregory S. Stupp, Chunlei Wu, Andrew I. Su, Benjamin M. Good
WikiGenomes: an open web application for community consumption and curation of gene annotation data in Wikidata. Database J. Biol. Databases Curation 2017 (2017)
Tim E. Putman, Sebastian Burgstaller-Muehlbacher, Andra Waagmeester, Chunlei Wu, Andrew I. Su, Benjamin M. Good
Centralizing content and distributing labor: a community model for curating the very long tail of microbial genomes. Database J. Biol. Databases Curation 2016 (2016)
Benjamin M. Good, Timothy Putman, Andrew I. Su, Andra Waagmeester, Sebastian Burgstaller-Muehlbacher, Elvira Mitraka
Opportunities and Challenges Presented by Wikidata in the Context of Biocuration. ICBO/BioCreative (2016)
Andra Waagmeester, Egon L. Willighagen, Núria Queralt-Rosinach, Elvira Mitraka, Sebastian Burgstaller-Muehlbacher, Tim E. Putman, Julia Turner, Lynn M. Schriml, Paul Pavlidis, Andrew I. Su, Benjamin M. Good
Linking Wikidata to the Rest of the Semantic Web. SWAT4LS (2016)
Sebastian Burgstaller-Muehlbacher, Andra Waagmeester, Elvira Mitraka, Julia Turner, Tim E. Putman, Justin Leong, Chinmay Naik, Paul Pavlidis, Lynn M. Schriml, Benjamin M. Good, Andrew I. Su
Wikidata as a semantic framework for the Gene Wiki initiative. Database J. Biol. Databases Curation 2016 (2016)
Àlex Bravo, Tong Shu Li, Andrew I. Su, Benjamin M. Good, Laura I. Furlong
Combining machine learning, crowdsourcing and expert knowledge to detect chemical-induced diseases in text. Database J. Biol. Databases Curation 2016 (2016)
Karthik Gangavarapu, Vyshakh Babji, Tobias Meißner, Andrew I. Su, Benjamin M. Good
Branch: an interactive, web-based tool for testing hypotheses and developing predictive models. Bioinform. 32 (13) (2016)
Ritu Khare, Benjamin M. Good, Robert Leaman, Andrew I. Su, Zhiyong Lu
Crowdsourcing in biomedicine: challenges and opportunities. Briefings Bioinform. 17 (1) (2016)
Benjamin M. Good, Sebastian Burgstaller-Muehlbacher, Elvira Mitraka, Timothy Putman, Andrew I. Su, Andra Waagmeester
Opportunities and Challenges Presented by Wikidata in the Context of Biocuration. ICBO/BioCreative (2016)
Tong Shu Li, Àlex Bravo, Laura I. Furlong, Benjamin M. Good, Andrew I. Su
A crowdsourcing workflow for extracting chemical-induced disease relations from free text. Database J. Biol. Databases Curation 2016 (2016)
Tong Shu Li, Benjamin M. Good, Andrew I. Su
Exposing ambiguities in a relation-extraction gold standard with crowdsourcing. CoRR (2015)
Robert Leaman, Benjamin M. Good, Andrew I. Su, Zhiyong Lu
Session Introduction. Pacific Symposium on Biocomputing (2015)
Benjamin M. Good, Max Nanis, Chunlei Wu, Andrew I. Su
Microtask Crowdsourcing for Disease Mention Annotation in PubMed Abstracts. Pacific Symposium on Biocomputing (2015)
Elvira Mitraka, Andra Waagmeester, Sebastian Burgstaller-Muehlbacher, Lynn M. Schriml, Andrew I. Su, Benjamin M. Good
Wikidata: A Platform for Data Integration and Dissemination for the Life Sciences and Beyond. SWAT4LS (2015)
Karthik Gangavarapu, Vyshakh Babji, Tobias Meißner, Andrew I. Su, Benjamin M. Good
Branch: An interactive, web-based tool for testing hypotheses and developing predictive models. CoRR (2015)
Benjamin M. Good, Gavin Ha, Chi K. Ho, Mark D. Wilkinson
OntoLoki: an automatic, instance-based method for the evaluation of biological ontologies on the Semantic Web. CoRR (2015)
Benjamin M. Good, Max Nanis, Andrew I. Su
Microtask crowdsourcing for disease mention annotation in PubMed abstracts. CoRR (2014)
Benjamin M. Good, Andrew I. Su
Crowdsourcing for Bioinformatics CoRR (2013)
Benjamin M. Good, Andrew I. Su
Crowdsourcing for bioinformatics. Bioinform. 29 (16) (2013)
Hassan Masum, Aarthi Rao, Benjamin M. Good, Matthew H. Todd, Aled M. Edwards, Leslie Chan, Barry A. Bunin, Andrew I. Su, Zakir Thomas, Philip E. Bourne
Ten Simple Rules for Cultivating Open Science and Collaborative R&D. PLoS Comput. Biol. 9 (9) (2013)
Erik L. Clarke, Salvatore Loguercio, Benjamin M. Good, Andrew I. Su
A task-based approach for Gene Ontology evaluation. J. Biomed. Semant. 4 (S-1) (2013)
Benjamin M. Good, Erik L. Clarke, Salvatore Loguercio, Andrew I. Su
Building a biomedical semantic network in Wikipedia with Semantic Wiki Links. Database J. Biol. Databases Curation 2012 (2012)
Benjamin M. Good, Erik L. Clarke, Luca de Alfaro, Andrew I. Su
The Gene Wiki in 2011: community intelligence applied to human gene annotation. Nucleic Acids Res. 40 (Database-Issue) (2012)
Benjamin M. Good, Erik L. Clarke, Salvatore Loguercio, Andrew I. Su
Linking genes to diseases with a SNPedia-Gene Wiki mashup. J. Biomed. Semant. 3 (S-1) (2012)
Salvatore Loguercio, Erik L. Clarke, Benjamin M. Good, Andrew I. Su
A Task-Based Approach for Large-Scale Evaluation of the Gene Ontology. HISB (2012)
Benjamin M. Good, Salvatore Loguercio, Max Nanis, Andrew I. Su
genegames.org: High-Throughput Access to Biological Knowledge and Reasoning through Online Games. HISB (2012)
Benjamin M. Good, Joseph T. Tennis, Mark D. Wilkinson
Social tagging in the life sciences: characterizing a new metadata resource for bioinformatics. BMC Bioinform. 10 (2009)
Benjamin M. Good, Joseph T. Tennis
Term based comparison metrics for controlled and uncontrolled indexing languages. Inf. Res. 14 (1) (2009)
Benjamin M. Good, Joseph T. Tennis
Evidence of term-structure differences among folksonomies and controlled indexing languages. ASIST (2008)
François Belleau, Nicole Tourigny, Benjamin M. Good, Jean Morissette
Bio2RDF : A Semantic Web Atlas of Post Genomic Knowledge about Human and Mouse. DILS (2008)
Byron Yu-Lin Kuo, Thomas Hentrich, Benjamin M. Good, Mark D. Wilkinson
Tag clouds for summarizing web search results. WWW (2007)
Young C. Song, Edward A. Kawas, Benjamin M. Good, Mark D. Wilkinson, Scott J. Tebbutt
DataBiNS: a BioMoby-based data-mining workflow for biological pathways and non-synonymous SNPs. Bioinform. 23 (6) (2007)
Benjamin M. Good, Mark D. Wilkinson
Ontology engineering using volunteer labor. WWW (2007)
Benjamin M. Good, Mark D. Wilkinson
The Life Sciences Semantic Web is Full of Creeps! Briefings Bioinform. 7 (3) (2006)
Benjamin M. Good, James Hartzell, Rodney S. Tosten
A Smarter FAQ. IKE (2006)
Benjamin M. Good, Edward A. Kawas, Byron Yu-Lin Kuo, Mark D. Wilkinson
iHOPerator: user-scripting a personalized bioinformatics Web, starting with the iHOP website. BMC Bioinform. 7 (2006)
Benjamin M. Good, Erin M. Tranfield, Poh C. Tan, Marlene Shehata, Gurpreet K. Singhera, John Gosselink, Elena B. Okon, Mark D. Wilkinson
Fast, Cheap and Out of Control: A Zero Curation Model for Ontology Development. Pacific Symposium on Biocomputing (2006)
Barbara Starr, Vinay K. Chaudhri, Boris Katz, Benjamin M. Good, Jérôme Thoméré
HIKE (HPKB Integrated Knowledge Environment) - A Query Interface and Integrated Knowledge Environment for HPKB. AAAI/IAAI (1999)