Andrew I. Su

Publication Activity (10 Years)

Years Active: 2006-2023
Publications (10 Years): 32

Top Topics

Medline Abstracts

Metadata Schemas

Top Venues

Database J. Biol. Databases Curation

Publications

Marco Alvarado Cano, Ginger Tsueng, Xinghua Zhou, Jiwen Xin, Laura D. Hughes, Julia Mullen, Andrew I. Su, Chunlei Wu
Schema Playground: a tool for authoring, extending, and using metadata schemas to improve FAIRness of biomedical data. BMC Bioinform. 24 (1) (2023)
Jackson Callaghan, Colleen H. Xu, Jiwen Xin, Marco Alvarado Cano, Anders Riutta, Eric Zhou, Rohan Juneja, Yao Yao, Madhumita Narayan, Kristina Hanspers, Ayushi Agrawal, Alexander R. Pico, Chunlei Wu, Andrew I. Su
BioThings Explorer: a query engine for a federated knowledge graph of biomedical APIs. Bioinform. 39 (9) (2023)
Jackson Callaghan, Colleen H. Xu, Jiwen Xin, Marco Alvarado Cano, Anders Riutta, Eric Zhou, Rohan Juneja, Yao Yao, Madhumita Narayan, Kristina Hanspers, Ayushi Agrawal, Alexander R. Pico, Chunlei Wu, Andrew I. Su
BioThings Explorer: a query engine for a federated knowledge graph of biomedical APIs. CoRR (2023)
Michael Mayers, Roger Tu, Dylan Steinecke, Tong Shu Li, Núria Queralt-Rosinach, Andrew I. Su
Design and application of a knowledge network for automatic prioritization of drug mechanisms. Bioinform. 38 (10) (2022)
Sebastien Lelong, Xinghua Zhou, Cyrus Afrasiabi, Zhongchao Qian, Marco Alvarado Cano, Ginger Tsueng, Jiwen Xin, Julia Mullen, Yao Yao, Ricardo Avila, Greg Taylor, Andrew I. Su, Chunlei Wu
BioThings SDK: a toolkit for building high-performance data APIs in biomedical research. Bioinform. 38 (7) (2022)
Ginger Tsueng, Max Nanis, Jennifer T. Fouquier, Michael Mayers, Benjamin M. Good, Andrew I. Su
Applying citizen science to gene, drug and disease relationship extraction from biomedical abstracts. Bioinform. 36 (4) (2020)
Núria Queralt-Rosinach, Gregory S. Stupp, Tong Shu Li, Michael Mayers, Maureen E. Hoatlin, Matthew Might, Benjamin M. Good, Andrew I. Su
Structured reviews for data and knowledge-driven research. Database J. Biol. Databases Curation 2020 (2020)
Tim E. Putman, Kevin Hybiske, Derek Jow, Cyrus Afrasiabi, Sebastien Lelong, Marco Alvarado Cano, Gregory S. Stupp, Andra Waagmeester, Benjamin M. Good, Chunlei Wu, Andrew I. Su
ChlamBase: a curated model organism database for the Chlamydia research community. Database J. Biol. Databases Curation 2019 (2019)
Ginger Tsueng, Arun Kumar, Max Nanis, Andrew I. Su
Aligning Needs: Integrating Citizen Science Efforts into Schools Through Service Requirements. Hum. Comput. 6 (2019)
Michael Mayers, Tong Shu Li, Núria Queralt-Rosinach, Andrew I. Su
Time-resolved evaluation of compound repositioning predictions on a text-mined knowledge network. BMC Bioinform. 20 (1) (2019)
Tim E. Putman, Kevin Hybiske, Derek Jow, Cyrus Afrasiabi, Sebastien Lelong, Marco Alvarado Cano, Chunlei Wu, Andrew I. Su
ChlamBase: a curated model organism database for the Chlamydia research community. Database J. Biol. Databases Curation 2019 (2019)
Ginger Tsueng, Max Nanis, Jennifer T. Fouquier, Michael Mayers, Benjamin M. Good, Andrew I. Su
Applying Citizen Science to Gene, Drug, Disease Relationship Extraction from Biomedical Abstracts. AKBC (2019)
Jennifer M. Radin, Steven R. Steinhubl, Andrew I. Su, Hansa Bhargava, Benjamin Greenberg, Brian M. Bot, Megan Doerr, Eric J. Topol
The Healthy Pregnancy Research Program: transforming pregnancy research through a ResearchKit app. npj Digit. Medicine 1 (2018)
Jiwen Xin, Cyrus Afrasiabi, Sebastien Lelong, Julee Adesara, Ginger Tsueng, Andrew I. Su, Chunlei Wu
Cross-linking BioThings APIs through JSON-LD to facilitate knowledge exploration. BMC Bioinform. 19 (1) (2018)
Annika Jacobsen, Andra Waagmeester, Rajaram Kaliyaperumal, Gregory S. Stupp, Lynn M. Schriml, Mark Thompson, Andrew I. Su, Marco Roos
Wikidata as an intuitive resource towards semantic data modeling in data FAIRification. SWAT4LS (2018)
Tim E. Putman, Sebastien Lelong, Sebastian Burgstaller-Muehlbacher, Andra Waagmeester, Colin M. Diesh, Nathan A. Dunn, Monica C. Munoz-Torres, Gregory S. Stupp, Chunlei Wu, Andrew I. Su, Benjamin M. Good
WikiGenomes: an open web application for community consumption and curation of gene annotation data in Wikidata. Database J. Biol. Databases Curation 2017 (2017)
Tim E. Putman, Sebastian Burgstaller-Muehlbacher, Andra Waagmeester, Chunlei Wu, Andrew I. Su, Benjamin M. Good
Centralizing content and distributing labor: a community model for curating the very long tail of microbial genomes. Database J. Biol. Databases Curation 2016 (2016)
Benjamin M. Good, Timothy Putman, Andrew I. Su, Andra Waagmeester, Sebastian Burgstaller-Muehlbacher, Elvira Mitraka
Opportunities and Challenges Presented by Wikidata in the Context of Biocuration. ICBO/BioCreative (2016)
Andra Waagmeester, Egon L. Willighagen, Núria Queralt-Rosinach, Elvira Mitraka, Sebastian Burgstaller-Muehlbacher, Tim E. Putman, Julia Turner, Lynn M. Schriml, Paul Pavlidis, Andrew I. Su, Benjamin M. Good
Linking Wikidata to the Rest of the Semantic Web. SWAT4LS (2016)
Sebastian Burgstaller-Muehlbacher, Andra Waagmeester, Elvira Mitraka, Julia Turner, Tim E. Putman, Justin Leong, Chinmay Naik, Paul Pavlidis, Lynn M. Schriml, Benjamin M. Good, Andrew I. Su
Wikidata as a semantic framework for the Gene Wiki initiative. Database J. Biol. Databases Curation 2016 (2016)
Àlex Bravo, Tong Shu Li, Andrew I. Su, Benjamin M. Good, Laura I. Furlong
Combining machine learning, crowdsourcing and expert knowledge to detect chemical-induced diseases in text. Database J. Biol. Databases Curation 2016 (2016)
Karthik Gangavarapu, Vyshakh Babji, Tobias Meißner, Andrew I. Su, Benjamin M. Good
Branch: an interactive, web-based tool for testing hypotheses and developing predictive models. Bioinform. 32 (13) (2016)
Ritu Khare, Benjamin M. Good, Robert Leaman, Andrew I. Su, Zhiyong Lu
Crowdsourcing in biomedicine: challenges and opportunities. Briefings Bioinform. 17 (1) (2016)
Benjamin M. Good, Sebastian Burgstaller-Muehlbacher, Elvira Mitraka, Timothy Putman, Andrew I. Su, Andra Waagmeester
Opportunities and Challenges Presented by Wikidata in the Context of Biocuration. ICBO/BioCreative (2016)
Chunlei Wu, Xuefeng Jin, Ginger Tsueng, Cyrus Afrasiabi, Andrew I. Su
BioGPS: building your own mash-up of gene annotations and expression profiles. Nucleic Acids Res. 44 (Database-Issue) (2016)
Tong Shu Li, Àlex Bravo, Laura I. Furlong, Benjamin M. Good, Andrew I. Su
A crowdsourcing workflow for extracting chemical-induced disease relations from free text. Database J. Biol. Databases Curation 2016 (2016)
Tong Shu Li, Benjamin M. Good, Andrew I. Su
Exposing ambiguities in a relation-extraction gold standard with crowdsourcing. CoRR (2015)
Robert Leaman, Benjamin M. Good, Andrew I. Su, Zhiyong Lu
Session Introduction. Pacific Symposium on Biocomputing (2015)
Benjamin M. Good, Max Nanis, Chunlei Wu, Andrew I. Su
Microtask Crowdsourcing for Disease Mention Annotation in PubMed Abstracts. Pacific Symposium on Biocomputing (2015)
Elvira Mitraka, Andra Waagmeester, Sebastian Burgstaller-Muehlbacher, Lynn M. Schriml, Andrew I. Su, Benjamin M. Good
Wikidata: A Platform for Data Integration and Dissemination for the Life Sciences and Beyond. SWAT4LS (2015)
Karthik Gangavarapu, Vyshakh Babji, Tobias Meißner, Andrew I. Su, Benjamin M. Good
Branch: An interactive, web-based tool for testing hypotheses and developing predictive models. CoRR (2015)
Kathleen M. Fisch, Tobias Meißner, Louis Gioia, Jean-Christophe Ducom, Tristan M. Carland, Salvatore Loguercio, Andrew I. Su
Omics Pipe: a community-based framework for reproducible multi-omics data analysis. Bioinform. 31 (11) (2015)
Benjamin M. Good, Max Nanis, Andrew I. Su
Microtask crowdsourcing for disease mention annotation in PubMed abstracts. CoRR (2014)
Benjamin M. Good, Andrew I. Su
Crowdsourcing for Bioinformatics CoRR (2013)
Chunlei Wu, Ian MacLeod, Andrew I. Su
BioGPS and MyGene.info: organizing online, gene-centric information. Nucleic Acids Res. 41 (Database-Issue) (2013)
Benjamin M. Good, Andrew I. Su
Crowdsourcing for bioinformatics. Bioinform. 29 (16) (2013)
Hassan Masum, Aarthi Rao, Benjamin M. Good, Matthew H. Todd, Aled M. Edwards, Leslie Chan, Barry A. Bunin, Andrew I. Su, Zakir Thomas, Philip E. Bourne
Ten Simple Rules for Cultivating Open Science and Collaborative R&D. PLoS Comput. Biol. 9 (9) (2013)
Erik L. Clarke, Salvatore Loguercio, Benjamin M. Good, Andrew I. Su
A task-based approach for Gene Ontology evaluation. J. Biomed. Semant. 4 (S-1) (2013)
Benjamin M. Good, Erik L. Clarke, Salvatore Loguercio, Andrew I. Su
Building a biomedical semantic network in Wikipedia with Semantic Wiki Links. Database J. Biol. Databases Curation 2012 (2012)
Benjamin M. Good, Erik L. Clarke, Luca de Alfaro, Andrew I. Su
The Gene Wiki in 2011: community intelligence applied to human gene annotation. Nucleic Acids Res. 40 (Database-Issue) (2012)
Benjamin M. Good, Erik L. Clarke, Salvatore Loguercio, Andrew I. Su
Linking genes to diseases with a SNPedia-Gene Wiki mashup. J. Biomed. Semant. 3 (S-1) (2012)
Salvatore Loguercio, Erik L. Clarke, Benjamin M. Good, Andrew I. Su
A Task-Based Approach for Large-Scale Evaluation of the Gene Ontology. HISB (2012)
Benjamin M. Good, Salvatore Loguercio, Max Nanis, Andrew I. Su
genegames.org: High-Throughput Access to Biological Knowledge and Reasoning through Online Games. HISB (2012)
Banu Dost, Chunlei Wu, Andrew I. Su, Vineet Bafna
TCLUST: A Fast Method for Clustering Genome-Scale Expression Data. IEEE ACM Trans. Comput. Biol. Bioinform. 8 (3) (2011)
Jong-Min Lee, Jie Zhang, Andrew I. Su, John R. Walker, Tim Wiltshire, Kihwa Kang, Ella Dragileva, Tammy Gillis, Edith T. Lopez, Marie-Josee Boily, Michel Cyr, Isaac S. Kohane, James F. Gusella, Marcy E. MacDonald, Vanessa C. Wheeler
A novel approach to investigate tissue-specific trinucleotide repeat instability. BMC Syst. Biol. 4 (2010)
Jon W. Huss III, Pierre Lindenbaum, Michael Martone, Donabel Roberts, Angel D. Pizarro, Faramarz Valafar, John B. Hogenesch, Andrew I. Su
The Gene Wiki: community intelligence applied to human gene annotation. Nucleic Acids Res. 38 (Database-Issue) (2010)
Phillip McClurg, Mathew T. Pletcher, Tim Wiltshire, Andrew I. Su
Comparative analysis of haplotype association mapping algorithms. BMC Bioinform. 7 (2006)