Marco Roos

Publication Activity (10 Years)

Years Active: 2006-2023
Publications (10 Years): 31

Top Topics

Top Venues

J. Biomed. Semant.

Publications

Alberto Cámara Ballesteros, Nirupama Benis, César Henrique Bernabé, Inés de Oliveira Coelho, Clémence M. A. Le Cornec, Aylin Demir, Bruna dos Santos Vieira, Jose Antonio Ramírez, K. Joeri van der Velde, Shuxin Zhang, Ronald Cornet, Annika Jacobsen, Marco Roos, Franz Schaefer, Morris A. Swertz, Mark D. Wilkinson
Surveyed common data access policies preferences amongst European Reference Networks. SWAT4HCLS (2023)
Daphne Wijnbergen, Rajaram Kaliyaperumal, Marco Roos, Eleni Mina
The FAIR Data Point Populator: collaborative FAIRification and population of FAIR Data Points. SWAT4HCLS (2023)
César Henrique Bernabé, Annika Jacobsen, Luiz Olavo Bonino da Silva Santos, Marco Roos
A Method to Facilitate the Identification of FAIRification Objectives. ICBO (2023)
Núria Queralt-Rosinach, Paul N. Schofield, Marco Roos, Robert Hoehndorf
Updating the CEMO ontology for future epidemiological challenges. SWAT4HCLS (2023)
César Henrique Bernabé, Núria Queralt-Rosinach, Vítor E. Silva Souza, Luiz Olavo Bonino da Silva Santos, Barend Mons, Annika Jacobsen, Marco Roos
The use of foundational ontologies in biomedical research. J. Biomed. Semant. 14 (1) (2023)
Pablo Perdomo-Quinteiro, Sergiu Siminiuc, Paraskevi Sakellariou, Marco Roos, Pietro Spitali, Núria Queralt-Rosinach
FAIRification and semantic modelling for Duchenne and Becker Muscular Dystrophy rare diseases. SWAT4HCLS (2023)
Karolis Cremers, Marco Roos, Katy Wolstencroft, Eleni Mina, Núria Queralt-Rosinach
Structured review on Huntington's disease iron hypothesis. SWAT4HCLS (2023)
César Henrique Bernabé, Tiago Prince Sales, Erik Schultes, Niek van Ulzen, Annika Jacobsen, Luiz Olavo Bonino da Silva Santos, Barend Mons, Marco Roos
A goal-oriented method for FAIRification planning. ER (Companion) (2023)
Philip van Damme, Pablo Alarcón Moreno, César Henrique Bernabé, Alberto Cámara Ballesteros, Clémence M. A. Le Cornec, Bruna dos Santos Vieira, K. Joeri van der Velde, Shuxin Zhang, Claudio Carta, Ronald Cornet, Peter A. C. 't Hoen, Annika Jacobsen, Morris A. Swertz, Marco Roos, Nirupama Benis
A Resource for Guiding Data Stewards to Make European Rare Disease Patient Registries FAIR. Data Sci. J. 22 (2023)
Erik Schultes, Marco Roos, Luiz Olavo Bonino da Silva Santos, Giancarlo Guizzardi, Jildau Bouwman, Thomas Hankemeier, Arie Baak, Barend Mons
FAIR Digital Twins for Data-Intensive Research. Frontiers Big Data 5 (2022)
Núria Queralt-Rosinach, Rajaram Kaliyaperumal, César Henrique Bernabé, Qinqin Long, Simone A. Joosten, Henk Jan van der Wijk, Erik Flikkenschild, Kees Burger, Annika Jacobsen, Barend Mons, Marco Roos
Applying the FAIR principles to data in a hospital: challenges and opportunities in a pandemic. J. Biomed. Semant. 13 (1) (2022)
Rajaram Kaliyaperumal, Mark D. Wilkinson, Pablo Alarcón Moreno, Nirupama Benis, Ronald Cornet, Bruna dos Santos Vieira, Michel Dumontier, César Henrique Bernabé, Annika Jacobsen, Clémence M. A. Le Cornec, Mario Prieto Godoy, Núria Queralt-Rosinach, Leo J. Schultze Kool, Morris A. Swertz, Philip van Damme, K. Joeri van der Velde, Nawel Lalout, Shuxin Zhang, Marco Roos
Semantic modelling of common data elements for rare disease registries, and a prototype workflow for their deployment over registry data. J. Biomed. Semant. 13 (1) (2022)
César Henrique Bernabé, Núria Queralt-Rosinach, Vítor E. Silva Souza, Luiz Olavo Bonino da Silva Santos, Annika Jacobsen, Barend Mons, Marco Roos
The Use of Foundational Ontologies in Bioinformatics. SWAT4HCLS (2022)
Rajaram Kaliyaperumal, Gurnoor Singh, Núria Queralt-Rosinach, Jumamurat Bayjanov, Peter Bram 't Hoen, Marco Roos
Phenopackets for the Semantic Web. SWAT4HCLS (2022)
Núria Queralt-Rosinach, César H. Bernabé, Qinqin Long, Rajaram Kaliyaperumal, Marco Roos
LUMC Clinical Ontology for Biomedical Research. ICBO (2021)
Núria Queralt-Rosinach, Mark D. Wilkinson, Rajaram Kaliyaperumal, César Bernabé, Qinqin Long, Michel Dumontier, Paul N. Schofield, Marco Roos
Reuse of Design Pattern Measurements for Health Data. JOWO (2021)
Martijn G. Kersloot, Annika Jacobsen, Karlijn H. J. Groenen, Bruna dos Santos Vieira, Rajaram Kaliyaperumal, Ameen Abu-Hanna, Ronald Cornet, Peter A. C. 't Hoen, Marco Roos, Leo J. Schultze Kool, Derk L. Arts
De-novo FAIRification via an Electronic Data Capture system by automated transformation of filled electronic Case Report Forms into machine-readable data. J. Biomed. Informatics 122 (2021)
Rajaram Kaliyaperumal, Núria Queralt Rosinach, Kees Burger, Luiz Olavo Bonino da Silva Santos, Marc Hanauer, Marco Roos
Enabling FAIR Discovery of Rare Disease Digital Resources. dHealth (2021)
Annika Jacobsen, Ricardo de Miranda Azevedo, Nick S. Juty, Dominique Batista, Simon J. Coles, Ronald Cornet, Mélanie Courtot, Mercè Crosas, Michel Dumontier, Chris T. A. Evelo, Carole A. Goble, Giancarlo Guizzardi, Karsten Kryger Hansen, Ali Hasnain, Kristina M. Hettne, Jaap Heringa, Rob W. W. Hooft, Melanie Imming, Keith G. Jeffery, Rajaram Kaliyaperumal, Martijn G. Kersloot, Christine R. Kirkpatrick, Tobias Kuhn, Ignasi Labastida, Barbara Magagna, Peter McQuilton, Natalie Meyers, Annalisa Montesanti, Mirjam van Reisen, Philippe Rocca-Serra, Robert Pergl, Susanna-Assunta Sansone, Luiz Olavo Bonino da Silva Santos, Juliane Schneider, George O. Strawn, Mark Thompson, Andra Waagmeester, Tobias Weigel, Mark D. Wilkinson, Egon L. Willighagen, Peter Wittenburg, Marco Roos, Barend Mons, Erik Schultes
FAIR Principles: Interpretations and Implementation Considerations. Data Intell. 2 (1-2) (2020)
Annika Jacobsen, Rajaram Kaliyaperumal, Luiz Olavo Bonino da Silva Santos, Barend Mons, Erik Schultes, Marco Roos, Mark Thompson
A Generic Workflow for the Data FAIRification Process. Data Intell. 2 (1-2) (2020)
Núria Queralt-Rosinach, Rajaram Kaliyaperumal, César H. Bernabé, Qinqin Long, Henk Jan van der Wijk, Barend Mons, Marco Roos
FAIR Data Management to Access Patient Data. DaMaLOS (2020)
Mark Thompson, Kees Burger, Rajaram Kaliyaperumal, Marco Roos, Luiz Olavo Bonino da Silva Santos
Making FAIR Easy with FAIR Tools: From Creolization to Convergence. Data Intell. 2 (1-2) (2020)
Annalisa Landi, Mark Thompson, Viviana Giannuzzi, Fedele Bonifazi, Ignasi Labastida, Luiz Olavo Bonino da Silva Santos, Marco Roos
The "A" of FAIR - As Open as Possible, as Closed as Necessary. Data Intell. 2 (1-2) (2020)
Bruna dos Santos Vieira, Karlijn H. J. Groenen, Peter A. C. 't Hoen, Annika Jacobsen, Marco Roos, Rajaram Kaliyaperumal, Martijn G. Kersloot, Ronald Cornet, Leo J. Schultze Kool
Applying the FAIR Data Principles to the Registry of Vascular Anomalies (VASCA). dHealth (2020)
Jannik Schaaf, Dennis Kadioglu, Jens Goebel, Christian-Alexander Behrendt, Marco Roos, David van Enckevort, Frank Ückert, Fatlume Sadiku, Thomas O. F. Wagner, Holger Storf
OSSE Goes FAIR - Implementation of the FAIR Data Principles for an Open-Source Registry for Rare Diseases. GMDS (2018)
Annika Jacobsen, Andra Waagmeester, Rajaram Kaliyaperumal, Gregory S. Stupp, Lynn M. Schriml, Mark Thompson, Andrew I. Su, Marco Roos
Wikidata as an intuitive resource towards semantic data modeling in data FAIRification. SWAT4LS (2018)
Tareq B. Malas, Roman Kudrin, Sergei Starikov, Dorien Peters, Marco Roos, Peter A. C. 't Hoen, Kristina M. Hettne
Semantic Knowledge Graph Network Features for Drug Repurposing. SWAT4LS (2017)
Claudio Carta, Marco Roos, Annika Jacobsen, Rajaram Kaliyaperumal, Mark Thompson, Mark D. Wilkinson, Ronald Cornet, Andra Waagmeester, David van Enckevort, Mascha Jansen, Luana Licata, Allegra Via, Domenica Taruscio
The FAIRification of Data and the Potential of FAIR Resources Demonstrated, in Practice, at the Rome Bring Your Own Data Workshop. SWAT4LS (2017)
Mark Thompson, Luiz Olavo Bonino da Silva Santos, Kees Burger, Rajaram Kaliyaperumal, Erik A. Schultes, Annika Jacobsen, Claudio Carta, Richard Finkers, David van Enckevort, Mascha Jansen, Barend Mons, Marco Roos
Overview of a Suite of Tools and Training Material for Implementing FAIR Data Principles. SWAT4LS (2017)
Mascha Jansen, Claudio Carta, Marco Roos, Luiz Olavo Bonino da Silva Santos
The Organisation of Bring Your Own Data (BYOD) Workshops to Make Life Science Data Linkable at the Source. SWAT4LS (2016)
Marco Roos, Mark D. Wilkinson, Rajaram Kaliyaperumal, Mark Thompson, Claudio Carta, Ronald Cornet, Luiz Olavo Bonino da Silva Santos
Registries of Domain-Relevant Semantic Reference Models Help Bootstrap Interoperability in Domains with Fragmented Data Resources. SWAT4LS (2016)
Eleni Mina, Mark Thompson, Kristina M. Hettne, Willeke M. C. van Roon-Mom, Rajaram Kaliyaperumal, Eelke van der Horst, Katherine Wolstencroft, Barend Mons, Marco Roos
Multidisciplinary Collaboration to Facilitate Hypotheses Generation in Huntington's Disease. e-Science (2015)
Eleni Mina, Mark Thompson, Rajaram Kaliyaperumal, Jun Zhao, Eelke van der Horst, Zuotian Tatum, Kristina M. Hettne, Erik A. Schultes, Barend Mons, Marco Roos
Nanopublications for exposing experimental data in the life-sciences: a Huntington's Disease case study. J. Biomed. Semant. 6 (2015)
Eelke van der Horst, Rajaram Kaliyaperumal, Zuotian Tatum, Mark Thompson, Erik A. Schultes, Eleni Mina, Ivo Fokkema, Johan T. den Dunnen, Marco Roos, Jeroen F. J. Laros, Barend Mons, Kristina M. Hettne, Peter A. C. 't Hoen
Finding Novel Associations Across Domains Using Linked Data: a Case Study on Genetic Variants Disrupting Transcription Start Sites. SWAT4LS (2015)
Rajaram Kaliyaperumal, Peter Bram 'T Hoen, Mark Thompson, Eelke van der Horst, Marco Roos
Genome Annotation using Nanopublications: An Approach to Interoperability of Genetic Data. SWAT4LS (2014)
Zuotian Tatum, Marco Roos, Andrew P. Gibson, Peter E. M. Taschner, Mark Thompson, Erik A. Schultes, Jeroen F. J. Laros
Preserving sequence annotations across reference sequences. J. Biomed. Semant. 5 (S-1) (2014)
Tim Clark, Marco Roos
Recent applications of web semantics in eLifeScience. J. Web Semant. 29 (2014)
Marco Roos, Alasdair J. G. Gray, Andra Waagmeester, Mark Thompson, Rajaram Kaliyaperumal, Eelke van der Horst, Barend Mons, Mark D. Wilkinson
Bring Your Own Data Workshops: A Mechanism to Aid Data Owners to Comply with Linked Data Best Practices. SWAT4LS (2014)
Kristina M. Hettne, Reinout van Schouwen, Eleni Mina, Eelke van der Horst, Mark Thompson, Rajaram Kaliyaperumal, Barend Mons, Erik M. van Mulligen, Jan A. Kors, Marco Roos
Explain your data by Concept Profile Analysis Web Services. F1000Research 3 (2014)
Pedro Sernadela, Eelke van der Horst, Mark Thompson, Pedro Lopes, Marco Roos, José Luís Oliveira
A Nanopublishing Architecture for Biomedical Data. PACBB (2014)
Kristina M. Hettne, Harish Dharuri, Jun Zhao, Katherine Wolstencroft, Khalid Belhajjame, Stian Soiland-Reyes, Eleni Mina, Mark Thompson, Don Cruickshank, Lourdes Verdes-Montenegro, Julián Garrido, David De Roure, Óscar Corcho, Graham Klyne, Reinout van Schouwen, Peter A. C. 't Hoen, Sean Bechhofer, Carole A. Goble, Marco Roos
Structuring research methods and data with the research object model: genomics workflows as a case study. J. Biomed. Semant. 5 (2014)
Eelke van der Horst, Marco Roos, Kristina M. Hettne
Workflows and Services for Concept Profile Generation. SWAT4LS (2013)
Eleni Mina, Mark Thompson, Rajaram Kaliyaperumal, Jun Zhao, Kristina M. Hettne, Erik A. Schultes, Marco Roos
Nanopublications for Exposing Experimental Data in the Life-sciences: A Huntington's Disease Case Study. SWAT4LS (2013)
Kristina M. Hettne, Harish Dharuri, Jun Zhao, Katherine Wolstencroft, Khalid Belhajjame, Stian Soiland-Reyes, Eleni Mina, Mark Thompson, Don Cruickshank, Lourdes Verdes-Montenegro, Julián Garrido, David De Roure, Óscar Corcho, Graham Klyne, Reinout van Schouwen, Peter A. C. 't Hoen, Sean Bechhofer, Carole A. Goble, Marco Roos
Structuring research methods and data with the Research Object model: genomics workflows as a case study. CoRR (2013)
Mark Thompson, Erik A. Schultes, Marco Roos, Barend Mons
Data Publishing Using Nanopublications. Tiny Trans. Comput. Sci. 1 (2012)
Khalid Belhajjame, Óscar Corcho, Daniel Garijo, Jun Zhao, Paolo Missier, David R. Newman, Raúl Palma, Sean Bechhofer, Esteban García-Cuesta, José Manuél Gómez-Pérez, Graham Klyne, Kevin R. Page, Marco Roos, José Enrique Ruiz, Stian Soiland-Reyes, Lourdes Verdes-Montenegro, David De Roure, Carole A. Goble
Workflow-Centric Research Objects: A First Class Citizen in the Scholarly Discourse. SePublica@ESWC (2012)
Kristina M. Hettne, Katherine Wolstencroft, Khalid Belhajjame, Carole A. Goble, Eleni Mina, Harish Dharuri, David De Roure, Lourdes Verdes-Montenegro, Julián Garrido, Marco Roos
Best Practices for Workflow Design: How to Prevent Workflow Decay. SWAT4LS (2012)
Konstantinos Karasavvas, Katy Wolstencroft, Eleni Mina, Don Cruickshank, Alan R. Williams, David De Roure, Carole A. Goble, Marco Roos
Opening new gateways to workflows for life scientists. HealthGrid (2012)
Jun Zhao, José Manuél Gómez-Pérez, Khalid Belhajjame, Graham Klyne, Esteban García-Cuesta, Aleix Garrido, Kristina M. Hettne, Marco Roos, David De Roure, Carole A. Goble
Why workflows break - Understanding and combating decay in Taverna workflows. eScience (2012)
Jun Zhao, Graham Klyne, Piotr Holubowicz, Raúl Palma, Stian Soiland-Reyes, Kristina M. Hettne, José Enrique Ruiz, Marco Roos, Kevin R. Page, José Manuél Gómez-Pérez, David De Roure, Carole A. Goble
RO-Manager: A Tool for Creating and Manipulating Research Objects to Support Reproducibility and Reuse in Sciences. LISC@ISWC (2012)
Andrew P. Gibson, Jesse C. J. van Dam, Erik A. Schultes, Marco Roos, Barend Mons
Towards Computational Evaluation of Evidence for Scientific Assertions with Nanopublications. SWAT4LS (2012)
Kristina M. Hettne, Stian Soiland-Reyes, Graham Klyne, Khalid Belhajjame, Matthew Gamble, Sean Bechhofer, Marco Roos, Óscar Corcho
Workflow forever: semantic web semantic models and tools for preserving and digitally publishing computational experiments. SWAT4LS (2011)
David De Roure, Carole A. Goble, Graham Klyne, Marco Roos, Kristina M. Hettne, José Enrique Ruiz, Raúl Palma, José Manuél Gómez-Pérez, Paolo Missier, Khalid Belhajjame
Towards the Preservation of Scientific Workflows. iPRES (2011)
Marco Roos, Sean Bechhofer, Jun Zhao, Paolo Missier, David R. Newman, David De Roure, M. Scott Marshall
A Linked Data Approach to Sharing Workflows and Workflow Results. ISoLA (1) (2010)
Carole A. Goble, Jiten Bhagat, Sergejs Aleksejevs, Don Cruickshank, Danius T. Michaelides, David R. Newman, Mark Borkum, Sean Bechhofer, Marco Roos, Peter Li, David De Roure
myExperiment: a repository and social network for the sharing of bioinformatics workflows. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
David De Roure, Carole A. Goble, Sergejs Aleksejevs, Sean Bechhofer, Jiten Bhagat, Don Cruickshank, Paul Fisher, Nandkumar Kollara, Danius T. Michaelides, Paolo Missier, David R. Newman, Marcus Ramsden, Marco Roos, Katy Wolstencroft, Ed Zaluska, Jun Zhao
The Evolution of myExperiment. eScience (2010)
Jiten Bhagat, Franck Tanoh, Eric Nzuobontane, Thomas Laurent, Jerzy Orlowski, Marco Roos, Katy Wolstencroft, Sergejs Aleksejevs, Robert Stevens, Steve Pettifer, Rodrigo Lopez, Carole A. Goble
BioCatalogue: a universal catalogue of web services for the life sciences. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Adianto Wibisono, Marco Roos, M. Scott Marshall
The AIDA Toolkit - a Tool for Users and Developers. SWAT4LS (2010)
Marco Roos, M. Scott Marshall, Andrew P. Gibson, Martijn J. Schuemie, Edgar Meij, Sophia Katrenko, Willem Robert van Hage, Konstantinos Krommydas, Pieter W. Adriaans
Structuring and extracting knowledge for the support of hypothesis generation in molecular biology. BMC Bioinform. 10 (S-10) (2009)
Ingo H. C. Wassink, Paul E. van der Vet, Katy Wolstencroft, Pieter B. T. Neerincx, Marco Roos, Han Rauwerda, Timo M. Breit
Analysing Scientific Workflows: Why Workflows Not Only Connect Web Services. SERVICES I (2009)
Ingo H. C. Wassink, Paul E. van der Vet, Elisabeth M. A. G. van Dijk, Gerrit C. van der Veer, Marco Roos
New interactions with workflow systems. ECCE (2009)
Marco Roos, M. Scott Marshall, Andrew P. Gibson, Pieter W. Adriaans
Structuring Mined Knowledge for the Support of Hypothesis Generation in Molecular Biology. SWAT4LS (2008)
Paolo Missier, Khalid Belhajjame, Jun Zhao, Marco Roos, Carole A. Goble
Data Lineage Model for Taverna Workflows with Lightweight Annotation Requirements. IPAW (2008)
Vladimir Korkhov, Dmitry Vasyunin, Adianto Wibisono, Adam Belloum, Márcia A. Inda, Marco Roos, Timo M. Breit, Louis O. Hertzberger
VLAM-G: Interactive data driven workflow engine for Grid-enabled resources. Sci. Program. 15 (3) (2007)
Lennart J. G. Post, Marco Roos, M. Scott Marshall, Roel van Driel, Timo M. Breit
A semantic web approach applied to integrative bioinformatics experimentation: a biological use case with genomics data. Bioinform. 23 (22) (2007)
C. Maria Keet, Marco Roos, M. Scott Marshall
A Survey of Requirements for Automated Reasoning Services for Bio-Ontolgies in OWL. OWLED (2007)
Tessa E. Pronk, Andy D. Pimentel, Marco Roos, Timo M. Breit
Taking the example of computer systems engineering for the analysis of biological cell systems. Biosyst. 90 (3) (2007)
M. Scott Marshall, Lennart J. G. Post, Marco Roos, Timo M. Breit
Using Semantic Web Tools to Integrate Experimental Measurement Data on Our Own Terms. OTM Workshops (1) (2006)
Márcia A. Inda, Adam Belloum, Marco Roos, Dmitry Vasunin, Cees T. A. M. de Laat, Louis O. Hertzberger, Timo M. Breit
Interactive Workflows in a Virtual Laboratory for e-Bioscience: The SigWin-Detector Tool for Gene Expression Analysis. e-Science (2006)