Morris A. Swertz

Publication Activity (10 Years)

Years Active: 2004-2024
Publications (10 Years): 19

Top Topics

Virtual Reality

Top Venues

Database J. Biol. Databases Curation

Publications

Alexander Kellmann, Max Postema, Joris de Keijser, Pjotr Svetachov, Rebecca C. Wilson, Esther van Enckevort, Morris A. Swertz
Visualization and exploration of linked data using virtual reality. Database J. Biol. Databases Curation 2024 (2024)
Alberto Cámara Ballesteros, Nirupama Benis, César Henrique Bernabé, Inés de Oliveira Coelho, Clémence M. A. Le Cornec, Aylin Demir, Bruna dos Santos Vieira, Jose Antonio Ramírez, K. Joeri van der Velde, Shuxin Zhang, Ronald Cornet, Annika Jacobsen, Marco Roos, Franz Schaefer, Morris A. Swertz, Mark D. Wilkinson
Surveyed common data access policies preferences amongst European Reference Networks. SWAT4HCLS (2023)
Alexander Kellmann, Pauline Lanting, Lude Franke, David van Enckevort, Morris A. Swertz
Semi-automatic translation of medicine usage data (in Dutch, free-text) from Lifelines COVID-19 questionnaires to ATC codes. Database J. Biol. Databases Curation 2023 (2023)
Casper de Visser, Lennart F. Johansson, Purva Kulkarni, Hailiang Mei, Pieter B. T. Neerincx, K. Joeri van der Velde, Peter Horvatovich, Alain J. van Gool, Morris A. Swertz, Peter A. C. 't Hoen, Anna Niehues
Ten quick tips for building FAIR workflows. PLoS Comput. Biol. 19 (9) (2023)
Alexander Kellmann, Max Postema, Joris de Keijser, Pjotr Svetachov, Becca Wilson, Esther van Enckevort, Morris A. Swertz
Visualisation and Exploration of Linked Data Using Virtual Reality - a preview of Graph2VR. SWAT4HCLS (2023)
Philip van Damme, Pablo Alarcón Moreno, César Henrique Bernabé, Alberto Cámara Ballesteros, Clémence M. A. Le Cornec, Bruna dos Santos Vieira, K. Joeri van der Velde, Shuxin Zhang, Claudio Carta, Ronald Cornet, Peter A. C. 't Hoen, Annika Jacobsen, Morris A. Swertz, Marco Roos, Nirupama Benis
A Resource for Guiding Data Stewards to Make European Rare Disease Patient Registries FAIR. Data Sci. J. 22 (2023)
Rajaram Kaliyaperumal, Mark D. Wilkinson, Pablo Alarcón Moreno, Nirupama Benis, Ronald Cornet, Bruna dos Santos Vieira, Michel Dumontier, César Henrique Bernabé, Annika Jacobsen, Clémence M. A. Le Cornec, Mario Prieto Godoy, Núria Queralt-Rosinach, Leo J. Schultze Kool, Morris A. Swertz, Philip van Damme, K. Joeri van der Velde, Nawel Lalout, Shuxin Zhang, Marco Roos
Semantic modelling of common data elements for rare disease registries, and a prototype workflow for their deployment over registry data. J. Biomed. Semant. 13 (1) (2022)
Raúl Aguirre-Gamboa, Niek de Klein, Jennifer di Tommaso, Annique Claringbould, Monique G. P. van der Wijst, Dylan de Vries, Harm Brugge, Roy Oelen, Urmo Võsa, Maria M. Zorro, Xiaojin Chu, Olivier B. Bakker, Zuzanna Borek, Isis Ricaño-Ponce, Patrick Deelen, Cheng-Jiang Xu, Morris A. Swertz, Iris Jonkers, Sebo Withoff, Irma Joosten, Serena Sanna, Vinod Kumar, Hans J. P. M. Koenen, Leo A. B. Joosten, Mihai G. Netea, Cisca Wijmenga, Lude Franke, Yang Li
Deconvolution of bulk blood eQTL effects into immune cell subpopulations. BMC Bioinform. 21 (1) (2020)
David Salgado, Irina M. Armean, Michael Baudis, Sergi Beltran, Salvador Capella-Gutiérrez, Denise Carvalho-Silva, Victoria Dominguez Del Angel, Joaquín Dopazo, Laura I. Furlong, Bo Gao, Leyla Jael García Castro, Dietlind Gerloff, Ivo Gut, Attila Gyenesei, Nina Habermann, John M. Hancock, Marc Hanauer, Eivind Hovig, Lennart F. Johansson, Thomas Keane, Jan Korbel, Katharina B. Lauer, Steve Laurie, Brane Leskosek, David Lloyd, Tomàs Marquès-Bonet, Hailiang Mei, Katalin Monostory, Janet Piñero, Krzysztof Poterlowicz, Ana Rath, Pubudu Samarakoon, Ferran Sanz, Gary Saunders, Daoud Sie, Morris A. Swertz, Kirill Tsukanov, Alfonso Valencia, Marko Vidak, Cristina Yenyxe González, Bauke Ylstra, Christophe Béroud
The ELIXIR Human Copy Number Variations Community: building bioinformatics infrastructure for research. F1000Research 9 (2020)
K. Joeri van der Velde, Floris Imhann, Bart Charbon, Chao Pang, David van Enckevort, Mariska Slofstra, Ruggero Barbieri, Rudi Alberts, Dennis Hendriksen, Fleur D. L. Kelpin, Mark de Haan, Tommy de Boer, Sido Haakma, Connor Stroomberg, Salome Scholtens, Gert-Jan van de Geijn, Eleonora A. M. Festen, Rinse K. Weersma, Morris A. Swertz
MOLGENIS research: advanced bioinformatics data software for non-bioinformaticians. Bioinform. 35 (6) (2019)
Alexander Kellmann, David van Enckevort, Marije van der Geest, Aneas Hodselmans, Morris A. Swertz
MOLGENIS Catalogue - towards a Unified Application for Data and Sample Catalogues. SWAT4HCLS (2019)
Lennart F. Johansson, Hendrik A. de Weerd, Eddy N. de Boer, Freerk van Dijk, Gerard J. te Meerman, Rolf Sijmons, Birgit Sikkema-Raddatz, Morris A. Swertz
NIPTeR: an R package for fast and accurate trisomy prediction in non-invasive prenatal testing. BMC Bioinform. 19 (1) (2018)
Shuang Li, K. Joeri van der Velde, Morris A. Swertz
Machine Learning for Multi-Omics Data Integration and Variant Pathogenicity Estimation. eScience (2018)
Mark D. Wilkinson, Ruben Verborgh, Luiz Olavo Bonino da Silva Santos, Tim Clark, Morris A. Swertz, Fleur D. L. Kelpin, Alasdair J. G. Gray, Erik A. Schultes, Erik M. van Mulligen, Paolo Ciccarese, Arnold Kuzniar, Anand Gavai, Mark Thompson, Rajaram Kaliyaperumal, Jerven T. Bolleman, Michel Dumontier
Interoperability and FAIRness through a novel combination of Web technologies. PeerJ Prepr. 5 (2017)
Chao Pang, Fleur D. L. Kelpin, David van Enckevort, Niina Eklund, Kaisa Silander, Dennis Hendriksen, Mark de Haan, Jonathan Jetten, Tommy de Boer, Bart Charbon, Petr Holub, Hans L. Hillege, Morris A. Swertz
BiobankUniverse: automatic matchmaking between datasets for biobank data discovery and integration. Bioinform. 33 (22) (2017)
Mark D. Wilkinson, Ruben Verborgh, Luiz Olavo Bonino da Silva Santos, Tim Clark, Morris A. Swertz, Fleur D. L. Kelpin, Alasdair J. G. Gray, Erik A. Schultes, Erik M. van Mulligen, Paolo Ciccarese, Arnold Kuzniar, Anand Gavai, Mark Thompson, Rajaram Kaliyaperumal, Jerven T. Bolleman, Michel Dumontier
Interoperability and FAIRness through a novel combination of Web technologies. PeerJ Comput. Sci. 3 (2017)
Chao Pang, David van Enckevort, Mark de Haan, Fleur D. L. Kelpin, Jonathan Jetten, Dennis Hendriksen, Tommy de Boer, Bart Charbon, Erwin Winder, K. Joeri van der Velde, Dany Doiron, Isabel Fortier, Hans L. Hillege, Morris A. Swertz
MOLGENIS/connect: a system for semi-automatic integration of heterogeneous phenotype data with applications in biobanks. Bioinform. 32 (14) (2016)
Edwin Valentijn, K. G. Begeman, Andrey N. Belikov, Danny Boxhoorn, Jarle Brinchmann, John McFarland, H. Holties, K. H. Kuijken, Gijs A. Verdoes Kleijn, Willem-Jan Vriend, O. Rees Williams, Jos B. T. M. Roerdink, Lambert R. B. Schomaker, Morris A. Swertz, A. Tsyganov, G. J. W. van Dijk
Target and (Astro-)WISE technologies Data federations and its applications. Astroinformatics (2016)
Mark D. Wilkinson, Ruben Verborgh, Luiz Olavo Bonino da Silva Santos, Tim Clark, Morris A. Swertz, Fleur D. L. Kelpin, Alasdair J. G. Gray, Erik A. Schultes, Erik M. van Mulligen, Paolo Ciccarese, Mark Thompson, Rajaram Kaliyaperumal, Jerven T. Bolleman, Michel Dumontier
Interoperability and FAIRness through a novel combination of Web technologies. PeerJ Prepr. 4 (2016)
Chao Pang, Dennis Hendriksen, Martijn Dijkstra, K. Joeri van der Velde, Joël Kuiper, Hans L. Hillege, Morris A. Swertz
BiobankConnect: software to rapidly connect data elements for pooled analysis across biobanks using ontological and lexical indexing. J. Am. Medical Informatics Assoc. 22 (1) (2015)
Morris A. Swertz, K. Joeri van der Velde
MOLGENIS/OMX for multi-omics and personalized medicine. J. Clin. Bioinform. 5 (S-1) (2015)
Alexandros Kanterakis, Joël Kuiper, George Potamias, Morris A. Swertz
PyPedia: using the wiki paradigm as crowd sourcing environment for bioinformatics protocols. Source Code Biol. Medicine 10 (2015)
Morris A. Swertz, David van Enckevort, Chao Pang
MOLGENIS catalogue. J. Clin. Bioinform. 5 (S-1) (2015)
Chao Pang, Annet Sollie, Anna Sijtsma, Dennis Hendriksen, Bart Charbon, Mark de Haan, Tommy de Boer, Fleur D. L. Kelpin, Jonathan Jetten, K. Joeri van der Velde, Nynke Smidt, Rolf Sijmons, Hans L. Hillege, Morris A. Swertz
SORTA: a system for ontology-based re-coding and technical annotation of biomedical phenotype data. Database J. Biol. Databases Curation 2015 (2015)
K. Joeri van der Velde, Mark de Haan, Konrad Zych, Danny Arends, L. Basten Snoek, Jan E. Kammenga, Ritsert C. Jansen, Morris A. Swertz, Yang Li
. Nucleic Acids Res. 42 (Database-Issue) (2014)
Joël Kuiper, Iain James Marshall, Byron C. Wallace, Morris A. Swertz
Spá: A Web-Based Viewer for Text Mining in Evidence Based Medicine. ECML/PKDD (3) (2014)
Heorhiy Byelas, Martijn Dijkstra, Pieter B. T. Neerincx, Freerk van Dijk, Alexandros Kanterakis, Patrick Deelen, Morris A. Swertz
Scaling Bio-Analyses from Computational Clusters to Grids. IWSG (2013)
Heorhiy Byelas, Morris A. Swertz
Visualization of Bioinformatics Workflows for Ease of Understanding and Design Activities. BIOINFORMATICS (2013)
L. Basten Snoek, K. Joeri van der Velde, Danny Arends, Yang Li, Antje Beyer, Mark Elvin, Jasmin Fisher, Alex Hajnal, Michael O. Hengartner, Gino B. Poulin, Miriam Rodriguez, Tobias Schmid, Sabine Schrimpf, Feng Xue, Ritsert C. Jansen, Jan E. Kammenga, Morris A. Swertz
spp. Nucleic Acids Res. 41 (Database-Issue) (2013)
Miranda D. Stobbe, Morris A. Swertz, Ines Thiele, Trebor Rengaw, Antoine H. C. van Kampen, Perry D. Moerland
Consensus and conflict cards for metabolic pathway databases. BMC Syst. Biol. 7 (2013)
Heorhiy Byelas, Martijn Dijkstra, Morris A. Swertz
Introducing Data Provenance and Error Handling for NGS Workflows within the MOLGENIS Computational Framework. BIOINFORMATICS (2012)
Danny Arends, K. Joeri van der Velde, Pjotr Prins, Karl W. Broman, Steffen Möller, Ritsert C. Jansen, Morris A. Swertz
xQTL workbench: a scalable web environment for multi-level QTL analysis. Bioinform. 28 (7) (2012)
Caroline Durrant, Morris A. Swertz, Rudi Alberts, Danny Arends, Steffen Möller, Richard Mott, Pjotr Prins, K. Joeri van der Velde, Ritsert C. Jansen, Klaus Schughart
Bioinformatics tools and database resources for systems genetics analysis in mice - a short review and an evaluation of future needs. Briefings Bioinform. 13 (2) (2012)
Myles Byrne, Ivo F. A. C. Fokkema, Owen Lancaster, Tomasz Adamusiak, Anni Ahonen-Bishopp, David Atlan, Christophe Béroud, Michael Cornell, Raymond Dalgleish, Andrew Devereau, George P. Patrinos, Morris A. Swertz, Peter E. M. Taschner, Gudmundur A. Thorisson, Mauno Vihinen, Anthony J. Brookes, Juha Muilu
VarioML framework for comprehensive variation data representation and exchange. BMC Bioinform. 13 (2012)
Natalja Kurbatova, Tomasz Adamusiak, Pavel Kurnosov, Morris A. Swertz, Misha Kapushesky
ontoCAT: an R package for ontology traversal and search. Bioinform. 27 (17) (2011)
Tomasz Adamusiak, Tony Burdett, Natalja Kurbatova, K. Joeri van der Velde, Niran Abeygunawardena, Despoina Antonakaki, Misha Kapushesky, Helen E. Parkinson, Morris A. Swertz
OntoCAT - simple ontology search and integration in Java, R and REST/JavaScript. BMC Bioinform. 12 (2011)
Isthiaq Ahmad, Frank Suits, Berend Hoekman, Morris A. Swertz, Heorhiy Byelas, Martijn Dijkstra, Rob W. W. Hooft, Dmitry Katsubo, Bas van Breukelen, Rainer Bischoff, Peter Horvatovich
A high-throughput processing service for retention time alignment of complex proteomics and metabolomics LC-MS data. Bioinform. 27 (8) (2011)
Heorhiy Byelas, Alexandros Kanterakis, Morris A. Swertz
Towards a MOLGENIS Based Computational Framework. PDP (2011)
Morris A. Swertz, Martijn Dijkstra, Tomasz Adamusiak, K. Joeri van der Velde, Alexandros Kanterakis, Erik T. Roos, Joris Lops, Gudmundur A. Thorisson, Danny Arends, George Byelas, Juha Muilu, Anthony J. Brookes, Engbert O. de Brock, Ritsert C. Jansen, Helen E. Parkinson
The MOLGENIS toolkit: rapid prototyping of biosoftware at the push of a button. BMC Bioinform. 11 (S-12) (2010)
Damian Smedley, Paul N. Schofield, Chao-Kung Chen, Vassilis Aidinis, Crysanthi Ainali, Jonathan B. L. Bard, Rudi Balling, Ewan Birney, Andrew Blake, Erik Bongcam-Rudloff, Anthony J. Brookes, Gianni Cesareni, Christina Chandras, Janan T. Eppig, Paul Flicek, Georgios V. Gkoutos, Simon Greenaway, Michael Gruenberger, Jean-Karim Hériché, Andrew Lyall, Ann-Marie Mallon, Dawn Muddyman, Florian Reisinger, Martin Ringwald, Nadia A. Rosenthal, Klaus Schughart, Morris A. Swertz, Gudmundur A. Thorisson, Michael Zouberakis, John M. Hancock
Finding and sharing: new approaches to registries of databases and services for the biomedical sciences. Database J. Biol. Databases Curation 2010 (2010)
Michael Zouberakis, Christina Chandras, Morris A. Swertz, Damian Smedley, Michael Gruenberger, Jonathan B. L. Bard, Klaus Schughart, Nadia A. Rosenthal, John M. Hancock, Paul N. Schofield, George Kollias, Vassilis Aidinis
Mouse Resource Browser - a database of mouse databases. Database J. Biol. Databases Curation 2010 (2010)
Yang Li, Morris A. Swertz, Gonzalo Vera, Jingyuan Fu, Rainer Breitling, Ritsert C. Jansen
designGG: an R-package and web tool for the optimal design of genetical genomics experiments. BMC Bioinform. 10 (2009)
Damian Smedley, Morris A. Swertz, Katy Wolstencroft, Glenn Proctor, Michael Zouberakis, Jonathan B. L. Bard, John M. Hancock, Paul N. Schofield
Solutions for data integration in functional genomics: a critical assessment and case study. Briefings Bioinform. 9 (6) (2008)
Morris A. Swertz, Damian Smedley, Katy Wolstencroft, Rudi Alberts, Michael Zouberakis, Vassilis Aidinis, Klaus Schughart, Paul N. Schofield, Ritsert C. Jansen
Towards dynamic database infrastructures for mouse genetics. BIBE (2008)
Rudi Alberts, Jingyuan Fu, Morris A. Swertz, L. Alrik Lubbers, Casper J. Albers, Ritsert C. Jansen
Combining microarrays and genetic analysis. Briefings Bioinform. 6 (2) (2005)
Morris A. Swertz, Engbert O. de Brock, Sacha A. F. T. van Hijum, Anne de Jong, Girbe Buist, Richard J. S. Baerends, Jan Kok, Oscar P. Kuipers, Ritsert C. Jansen
Molecular Genetics Information System (MOLGENIS): alternatives in developing local experimental genomics databases. Bioinform. 20 (13) (2004)