Georgios V. Gkoutos

Publication Activity (10 Years)

Years Active: 2001-2024
Publications (10 Years): 39

Top Topics

Biomedical Ontologies

Top Venues

J. Biomed. Semant.

Comput. Biol. Medicine

ICBO/BioCreative

Publications

Yuting Zhang, Boyang Liu, Karina V. Bunting, David Brind, Alexander Thorley, Andreas Karwath, Wenqi Lu, Diwei Zhou, Xiaoxia Wang, Alastair R. Mobley, Otilia Tica, Georgios V. Gkoutos, Dipak Kotecha, Jinming Duan
Development of Automated Neural Network Prediction for Echocardiographic Left ventricular Ejection Fraction. CoRR (2024)
Samuel Cusworth, Georgios V. Gkoutos, Animesh Acharjee
A novel generative adversarial networks modelling for the class imbalance problem in high dimensional omics data. BMC Medical Informatics Decis. Mak. 24 (1) (2024)
Luke T. Slater, John A. Williams, Paul N. Schofield, Sophie Russell, Samantha C. Pendleton, Andreas Karwath, Hilary Fanning, Simon Ball, Robert Hoehndorf, Georgios V. Gkoutos
Klarigi: Characteristic explanations for semantic biomedical data. Comput. Biol. Medicine 153 (2023)
Honghan Wu, Minhong Wang, Jinge Wu, Farah Francis, Yun-Hsuan Chang, Alex Shavick, Hang Dong, Michael T. C. Poon, Natalie K. Fitzpatrick, Adam P. Levine, Luke T. Slater, Alex Handy, Andreas Karwath, Georgios V. Gkoutos, Claude Chelala, Anoop D. Shah, Robert Stewart, Nigel Collier, Beatrice Alex, William Whiteley, Cathie Sudlow, Angus Roberts, Richard J. B. Dobson
A survey on clinical natural language processing in the United Kingdom from 2007 to 2022. npj Digit. Medicine 5 (2022)
Luke T. Slater, Sophie Russell, Silver Makepeace, Alexander Carberry, Andreas Karwath, John A. Williams, Hilary Fanning, Simon Ball, Robert Hoehndorf, Georgios V. Gkoutos
Evaluating semantic similarity methods for comparison of text-derived phenotype profiles. BMC Medical Informatics Decis. Mak. 22 (1) (2022)
Yuanwei Xu, Katrina Nash, Animesh Acharjee, Georgios V. Gkoutos
CACONET: a novel classification framework for microbial correlation networks. Bioinform. 38 (6) (2022)
Honghan Wu, Huayu Zhang, Andreas Karwath, Zina M. Ibrahim, Ting Shi, Xin Zhang, Kun Wang, Jiaxing Sun, Kevin Dhaliwal, Daniel Bean, Victor Roth Cardoso, Kezhi Li, James T. Teo, Amitava Banerjee, Fang Gao-Smith, Tony Whitehouse, Tonny Veenith, Georgios V. Gkoutos, Xiaodong Wu, Richard J. B. Dobson, Bruce Guthrie
Ensemble learning for poor prognosis predictions: A case study on SARS-CoV-2. J. Am. Medical Informatics Assoc. 28 (4) (2021)
Luke T. Slater, Andreas Karwath, Robert Hoehndorf, Georgios V. Gkoutos
Effects of Negation and Uncertainty Stratification on Text-Derived Patient Profile Similarity. Frontiers Digit. Health 3 (2021)
Luke T. Slater, John A. Williams, Andreas Karwath, Hilary Fanning, Simon Ball, Paul N. Schofield, Robert Hoehndorf, Georgios V. Gkoutos
Multi-faceted semantic clustering with text-derived phenotypes. Comput. Biol. Medicine 138 (2021)
Luca Pion-Tonachini, Kristofer E. Bouchard, Héctor García Martín, Sean Peisert, W. Bradley Holtz, Anil Aswani, Dipankar Dwivedi, Haruko M. Wainwright, Ghanshyam Pilania, Benjamin Nachman, Babetta L. Marrone, Nicola Falco, Prabhat, Daniel B. Arnold, Alejandro Wolf-Yadlin, Sarah Powers, Sharlee Climer, Quinn Jackson, Ty Carlson, Michael Sohn, Petrus H. Zwart, Neeraj Kumar, Amy Justice, Claire J. Tomlin, Daniel A. Jacobson, Gos Micklem, Georgios V. Gkoutos, Peter J. Bickel, Jean-Baptiste Cazier, Juliane Müller, Bobbie-Jo Webb-Robertson, Rick Stevens, Mark Anderson, Kenneth Kreutz-Delgado, Michael W. Mahoney, James B. Brown
Learning from learning machines: a new generation of AI technology to meet the needs of science. CoRR (2021)
Samantha Pendleton, Luke T. Slater, Andreas Karwath, Rose M. Gilbert, Nicola Davis, Konrad Pesudovs, Xiaoxuan Liu, Alastair K. Denniston, Georgios V. Gkoutos, Tasanee Braithwaite
Development and application of the ocular immune-mediated inflammatory diseases ontology enhanced with synonyms from online patient support forum conversation. Comput. Biol. Medicine 135 (2021)
Vartika Bisht, Animesh Acharjee, Georgios V. Gkoutos
NFnetFu: A novel workflow for microbiome data fusion. Comput. Biol. Medicine 135 (2021)
Tanmay Basu, Georgios V. Gkoutos
Exploring the Performance of Baseline Text Mining Frameworks for Early Prediction of Self Harm Over Social Media. CLEF (Working Notes) (2021)
Luke T. Slater, Andreas Karwath, John A. Williams, Sophie Russell, Silver Makepeace, Alexander Carberry, Robert Hoehndorf, Georgios V. Gkoutos
Towards similarity-based differential diagnostics for common diseases. Comput. Biol. Medicine 133 (2021)
Senay Kafkas, Sara Althubaiti, Georgios V. Gkoutos, Robert Hoehndorf, Paul N. Schofield
Linking common human diseases to their phenotypes; development of a resource for human phenomics. J. Biomed. Semant. 12 (1) (2021)
Luke T. Slater, William Bradlow, Simon Ball, Robert Hoehndorf, Georgios V. Gkoutos
Improved characterisation of clinical text through ontology-based vocabulary expansion. J. Biomed. Semant. 12 (1) (2021)
Luke T. Slater, John A. Williams, Paul N. Schofield, Georgios V. Gkoutos
Exploring Sentiment as a Potential Indicator of Bias in Disease Ontologies. BIBM (2021)
Furqan Aziz, Mian Saeed Akbar, Muhammad Jawad, Abdul Haseeb Malik, Muhammad Irfan Uddin, Georgios V. Gkoutos
Graph characterisation using graphlet-based entropies. Pattern Recognit. Lett. 147 (2021)
Luke T. Slater, William Bradlow, Dino FA. Motti, Robert Hoehndorf, Simon Ball, Georgios V. Gkoutos
A fast, accurate, and generalisable heuristic-based negation detection algorithm for clinical text. Comput. Biol. Medicine 130 (2021)
Tanmay Basu, Simon Goldsworthy, Georgios V. Gkoutos
A Sentence Classification Framework to Identify Geometric Errors in Radiation Therapy from Relevant Literature. Inf. 12 (4) (2021)
Luke T. Slater, Georgios V. Gkoutos, Robert Hoehndorf
Towards semantic interoperability: finding and repairing hidden contradictions in biomedical ontologies. BMC Medical Informatics Decis. Mak. (10) (2020)
Fernando Javier Martínez Santiago, Rosario García-Viedma, John A. Williams, Luke T. Slater, Georgios V. Gkoutos
Aging Neuro-Behavior Ontology. Appl. Ontology 15 (2) (2020)
Samantha Pendleton, Georgios V. Gkoutos
Jabberwocky: an ontology-aware toolkit for manipulating text. J. Open Source Softw. 5 (51) (2020)
Imane Boudellioua, Maxat Kulmanov, Paul N. Schofield, Georgios V. Gkoutos, Robert Hoehndorf
DeepPVP: phenotype-based prioritization of causative variants using deep learning. BMC Bioinform. 20 (1) (2019)
Laurel Cooper, Austin Meier, Marie-Angélique Laporte, Justin Elser, Chris Mungall, Brandon T. Sinn, Dario Cavaliere, Seth Carbon, Nathan A. Dunn, Barry Smith, Botong Qu, Justin Preece, Eugene Zhang, Sinisa Todorovic, Georgios V. Gkoutos, John H. Doonan, Dennis W. Stevenson, Elizabeth Arnaud, Pankaj Jaiswal
The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics. Nucleic Acids Res. 46 (Database-Issue) (2018)
Maxat Kulmanov, Senay Kafkas, Andreas Karwath, Alexander Malic, Georgios V. Gkoutos, Michel Dumontier, Robert Hoehndorf
Vec2SPARQL: integrating SPARQL queries and knowledge graph embeddings. SWAT4LS (2018)
Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf
The anatomy of phenotype ontologies: principles, properties and applications. Briefings Bioinform. 19 (5) (2018)
Maxat Kulmanov, Paul N. Schofield, Georgios V. Gkoutos, Robert Hoehndorf
Ontology-based validation and identification of regulatory phenotypes. Bioinform. 34 (17) (2018)
Miguel Ángel Rodríguez-García, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf
Integrating phenotype ontologies with PhenomeNET. J. Biomed. Semant. 8 (1) (2017)
Imane Boudellioua, Rozaimi B. Mahamad Razali, Maxat Kulmanov, Yasmeen Hashish, Vladimir B. Bajic, Eva Goncalves-Serra, Nadia Schoenmakers, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf
Semantic prioritization of novel causative genomic variants. PLoS Comput. Biol. 13 (4) (2017)
Qinghua Wang, Shabbir S. Abdul, Lara Almeida, Sophia Ananiadou, Yalbi I. Balderas-Martínez, Riza Batista-Navarro, David Campos, Lucy Chilton, Hui-Jou Chou, Gabriela Contreras, Laurel Cooper, Hong-Jie Dai, Barbra Ferrell, Juliane Fluck, Socorro Gama-Castro, Nancy George, Georgios V. Gkoutos, Afroza Khanam Irin, Lars Juhl Jensen, Silvia Jimenez, Toni Rose Jue, Ingrid M. Keseler, Sumit Madan, Sérgio Matos, Peter McQuilton, Marija Milacic, Matthew E. Mort, Jeyakumar Natarajan, Evangelos Pafilis, Emiliano Pereira, Shruti Rao, Fabio Rinaldi, Karen Rothfels, David Salgado, Raquel M. Silva, Onkar Singh, Raymund Stefancsik, Chu-Hsien Su, Suresh Subramani, Hamsa D. Tadepally, Loukia Tsaprouni, Nicole A. Vasilevsky, Xiaodong Wang, Andrew Chatr-aryamontri, Stanley J. F. Laulederkind, Sherri Matis-Mitchell, Johanna R. McEntyre, Sandra E. Orchard, Sangya Pundir, Raul Rodriguez-Esteban, Kimberly Van Auken, Zhiyong Lu, Mary L. Schaeffer, Cathy H. Wu, Lynette Hirschman, Cecilia N. Arighi
Overview of the interactive task in BioCreative V. Database J. Biol. Databases Curation 2016 (2016)
Laurel Cooper, Austin Meier, Justin Elser, Justin Preece, Xu Xu, Ryan Kitchen, Botong Qu, Eugene Zhang, Sinisa Todorovic, Pankaj Jaiswal, Marie-Angélique Laporte, Elizabeth Arnaud, Seth Carbon, Chris Mungall, Barry Smith, Georgios V. Gkoutos, John H. Doonan
The Planteome Project. ICBO/BioCreative (2016)
Miguel Ángel Rodríguez-García, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf
Integrating phenotype ontologies with PhenomeNET. OM@ISWC (2016)
Miguel Ángel Rodríguez-García, Luke T. Slater, Imane Boudellioua, Paul N. Schofield, Georgios V. Gkoutos, Robert Hoehndorf
Updates to the AberOWL Ontology Repository. ICBO/BioCreative (2016)
Hannah M. Fisher, Robert Hoehndorf, Bruno S. Bazelato, Soheil S. Dadras, Lloyd E. King, Georgios V. Gkoutos, John P. Sundberg, Paul N. Schofield
DermO; an ontology for the description of dermatologic disease. J. Biomed. Semant. 7 (2016)
Luke T. Slater, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf
To MIREOT or not to MIREOT? A Case Study of the Impact of Using MIREOT in the Experimental Factor Ontology (EFO). ICBO/BioCreative (2016)
Robert Hoehndorf, Liam Mencel, Georgios V. Gkoutos, Paul N. Schofield
Large-Scale Reasoning over Functions in Biomedical Ontologies. FOIS (2016)
Luke T. Slater, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf
Using AberOWL for fast and scalable reasoning over BioPortal ontologies. J. Biomed. Semant. 7 (2016)
Robert Hoehndorf, Mona Alshahrani, Georgios V. Gkoutos, George Gosline, Quentin Groom, Thomas Hamann, Jens Kattge, Sylvia Mota de Oliveira, Marco Schmidt, Soraya Sierra, Erik Smets, Rutger A. Vos, Claus Weiland
The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants. J. Biomed. Semant. 7 (2016)
Luke T. Slater, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf
Using Aber-OWL for fast and scalable reasoning over BioPortal ontologies. ICBO (2015)
Miguel Ángel Rodríguez-García, Luke T. Slater, Keiron O'Shea, Paul N. Schofield, Georgios V. Gkoutos, Robert Hoehndorf
Visualising Ontologies with AberOWL. SWAT4LS (2015)
Robert Hoehndorf, Michael Gruenberger, Georgios V. Gkoutos, Paul N. Schofield
Similarity-based search of model organism, disease and drug effect phenotypes. J. Biomed. Semant. 6 (2015)
Robert Hoehndorf, Luke T. Slater, Paul N. Schofield, Georgios V. Gkoutos
Aber-OWL: a framework for ontology-based data access in biology. BMC Bioinform. 16 (2015)
Luke T. Slater, Miguel Ángel Rodríguez-García, Keiron O'Shea, Paul N. Schofield, Georgios V. Gkoutos, Robert Hoehndorf
Experiences with Aber-OWL, an Ontology Repository with OWL EL Reasoning. OWLED (2015)
Luke T. Slater, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf
AberOWL: an ontology portal with OWL EL reasoning. ICBO (2015)
Robert Hoehndorf, Paul N. Schofield, Georgios V. Gkoutos
The role of ontologies in biological and biomedical research: a functional perspective. Briefings Bioinform. 16 (6) (2015)
Robert Hoehndorf, Luke T. Slater, Paul N. Schofield, Georgios V. Gkoutos
Aber-OWL: a framework for ontology-based data access in biology. CoRR (2014)
Robert Hoehndorf, Tanya Hiebert, Nigel W. Hardy, Paul N. Schofield, Georgios V. Gkoutos, Michel Dumontier
Mouse model phenotypes provide information about human drug targets. Bioinform. 30 (5) (2014)
Sebastian Köhler, Sandra C. Doelken, Christopher J. Mungall, Sebastian Bauer, Helen V. Firth, Isabelle Bailleul-Forestier, Graeme C. M. Black, Danielle L. Brown, Michael Brudno, Jennifer Campbell, David R. FitzPatrick, Janan T. Eppig, Andrew P. Jackson, Kathleen Freson, Marta Gîrdea, Ingo Helbig, Jane A. Hurst, Johanna Jähn, Laird G. Jackson, Anne M. Kelly, David H. Ledbetter, Sahar Mansour, Christa L. Martin, Celia Moss, Andrew D. Mumford, Willem H. Ouwehand, Soo-Mi Park, Erin Rooney Riggs, Richard H. Scott, Sanjay Sisodiya, Steven Van Vooren, Ronald J. Wapner, Andrew O. M. Wilkie, Caroline F. Wright, Anneke T. Vulto-van Silfhout, Nicole de Leeuw, Bert B. A. de Vries, Nicole L. Washington, Cynthia L. Smith, Monte Westerfield, Paul N. Schofield, Barbara J. Ruef, Georgios V. Gkoutos, Melissa A. Haendel, Damian Smedley, Suzanna E. Lewis, Peter N. Robinson
The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data. Nucleic Acids Res. 42 (Database-Issue) (2014)
Robert Hoehndorf, Luke T. Slater, Paul N. Schofield, Georgios V. Gkoutos
Aber-OWL: A Framework for Ontology-based Data Access in Biology. SWAT4LS (2014)
Paul N. Schofield, John P. Sundberg, Beth A. Sundberg, Colin McKerlie, Georgios V. Gkoutos
The mouse pathology ontology, MPATH; structure and applications. J. Biomed. Semant. 4 (2013)
Robert Hoehndorf, Michel Dumontier, Georgios V. Gkoutos
Evaluation of research in biomedical ontologies. Briefings Bioinform. 14 (6) (2013)
David Osumi-Sutherland, Steven J. Marygold, Gillian H. Millburn, Peter McQuilton, Laura Ponting, Raymund Stefancsik, Kathleen Falls, Nicholas H. Brown, Georgios V. Gkoutos
The Drosophila phenotype ontology. J. Biomed. Semant. 4 (2013)
Daniel L. Cook, Maxwell Lewis Neal, Robert Hoehndorf, Georgios V. Gkoutos, John H. Gennari
Representing physiological processes and their participants with PhysioMaps. J. Biomed. Semant. 4 (S-1) (2013)
Georgios V. Gkoutos, Robert Hoehndorf
Ontology-based cross-species integration and analysis of Saccharomyces cerevisiae phenotypes. J. Biomed. Semant. 3 (S-2) (2012)
Robert Hoehndorf, Anika Oellrich, Dietrich Rebholz-Schuhmann, Paul N. Schofield, Georgios V. Gkoutos
Linking PharmGKB to Phenotype Studies and Animal Models of Disease for Drug Repurposing. Pacific Symposium on Biocomputing (2012)
Robert Hoehndorf, Michel Dumontier, Georgios V. Gkoutos
Identifying aberrant pathways through integrated analysis of knowledge in pharmacogenomics. Bioinform. 28 (16) (2012)
Sarala M. Wimalaratne, Pierre Grenon, Robert Hoehndorf, Georgios V. Gkoutos, Bernard de Bono
An infrastructure for ontology-based information systems in biomedicine: RICORDO case study. Bioinform. 28 (3) (2012)
Anika Oellrich, Georgios V. Gkoutos, Robert Hoehndorf, Dietrich Rebholz-Schuhmann
Quantitative comparison of mapping methods between Human and Mammalian Phenotype Ontology. J. Biomed. Semant. 3 (S-2) (2012)
Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf
The Units Ontology: a tool for integrating units of measurement in science. Database J. Biol. Databases Curation 2012 (2012)
Robert Hoehndorf, Michel Dumontier, Georgios V. Gkoutos
Towards quantitative measures in applied ontology CoRR (2012)
Robert Hoehndorf, Midori A. Harris, Heinrich Herre, Gabriella Rustici, Georgios V. Gkoutos
Semantic integration of physiology phenotypes with an application to the Cellular Phenotype Ontology. Bioinform. 28 (13) (2012)
Sebastian Köhler, Sebastian Bauer, Chris Mungall, Gabriele Carletti, Cynthia L. Smith, Paul N. Schofield, Georgios V. Gkoutos, Peter N. Robinson
Improving ontologies by automatic reasoning and evaluation of logical definitions. BMC Bioinform. 12 (2011)
Nico Adams, Robert Hoehndorf, Georgios V. Gkoutos, Gesine Hansen, Christian Hennig
PIDO: the primary immunodeficiency disease ontology. Bioinform. 27 (22) (2011)
Robert Hoehndorf, Michel Dumontier, John H. Gennari, Sarala M. Wimalaratne, Bernard de Bono, Daniel L. Cook, Georgios V. Gkoutos
Integrating systems biology models and biomedical ontologies. BMC Syst. Biol. 5 (2011)
Robert Hoehndorf, Michel Dumontier, Anika Oellrich, Sarala M. Wimalaratne, Dietrich Rebholz-Schuhmann, Paul N. Schofield, Georgios V. Gkoutos
A common layer of interoperability for biomedical ontologies based on OWL EL. Bioinform. 27 (7) (2011)
Hiroshi Masuya, Georgios V. Gkoutos, Nobuhiko Tanaka, Kazunori Waki, Yoshihiro Okuda, Tatsuya Kushida, Norio Kobayashi, Koji Doi, Kouji Kozaki, Robert Hoehndorf, Shigeharu Wakana, Tetsuro Toyoda, Riichiro Mizoguchi
An Advanced Strategy for Integration of Biological Measurement Data. ICBO (2011)
Damian Smedley, Paul N. Schofield, Chao-Kung Chen, Vassilis Aidinis, Crysanthi Ainali, Jonathan B. L. Bard, Rudi Balling, Ewan Birney, Andrew Blake, Erik Bongcam-Rudloff, Anthony J. Brookes, Gianni Cesareni, Christina Chandras, Janan T. Eppig, Paul Flicek, Georgios V. Gkoutos, Simon Greenaway, Michael Gruenberger, Jean-Karim Hériché, Andrew Lyall, Ann-Marie Mallon, Dawn Muddyman, Florian Reisinger, Martin Ringwald, Nadia A. Rosenthal, Klaus Schughart, Morris A. Swertz, Gudmundur A. Thorisson, Michael Zouberakis, John M. Hancock
Finding and sharing: new approaches to registries of databases and services for the biomedical sciences. Database J. Biol. Databases Curation 2010 (2010)
Nicole L. Washington, M. Gibson, Chris Mungall, Michael Ashburner, Georgios V. Gkoutos, Monte Westerfield, Melissa A. Haendel, Suzanna E. Lewis
NLP and Phenotypes: using Ontologies to link Human Diseases to Animal Models. Ontologies and Text Mining for Life Sciences (2008)
Georgios V. Gkoutos, Eain C. J. Green, Simon Greenaway, Andrew Blake, Ann-Marie Mallon, John M. Hancock
CRAVE: a database, middleware and visualization system for phenotype ontologies. Bioinform. 21 (7) (2005)
Eain C. J. Green, Georgios V. Gkoutos, Heena V. Lad, Andrew Blake, Joseph Weekes, John M. Hancock
EMPReSS: European Mouse Phenotyping Resource for Standardized Screens. Bioinform. 21 (12) (2005)
Georgios V. Gkoutos, Eain C. J. Green, Ann-Marie Mallon, John M. Hancock, Duncan Davidson
Building Mouse Phenotype Ontologies. Pacific Symposium on Biocomputing (2004)
Georgios V. Gkoutos, Henry S. Rzepa, Richard M. Clark, Osei Adjei, Harpal Johal
Chemical Machine Vision: Automated Extraction of Chemical Metadata from Raster Images. J. Chem. Inf. Comput. Sci. 43 (5) (2003)
Georgios V. Gkoutos, Philip R. Kenway, Henry S. Rzepa
JChemTidy: A Tool for Converting Chemical Web Document Collections to an XHTML Representation. J. Chem. Inf. Comput. Sci. 41 (2) (2001)
Georgios V. Gkoutos, Peter Murray-Rust, Henry S. Rzepa, Michael Wright
Chemical Markup, XML, and the World-Wide Web. 3. Toward a Signed Semantic Chemical Web of Trust. J. Chem. Inf. Comput. Sci. 41 (5) (2001)