Beatrice Alex

ORCID

Publication Activity (10 Years)

Years Active: 2004-2024
Publications (10 Years): 44

Top Venues

CoRR

BMC Medical Informatics Decis. Mak.

Digit. Scholarsh. Humanit.

University of Edinburgh, UK (PHD)

Education History

University of Edinburgh, UK

PHD

Publications

Abul Hasan, Jinge Wu, Quang Ngoc Nguyen, Salomé Andres, Imane Guellil, Huayu Zhang, Arlene Casey, Beatrice Alex, Bruce Guthrie, Honghan Wu
Infusing clinical knowledge into tokenisers for language models. CoRR (2024)
Aryo Pradipta Gema, Chaeeun Lee, Pasquale Minervini, Luke Daines, T. Ian Simpson, Beatrice Alex
Edinburgh Clinical NLP at MEDIQA-CORR 2024: Guiding Large Language Models with Hints. CoRR (2024)
Matús Falis, Aryo Pradipta Gema, Hang Dong, Luke Daines, Siddharth Basetti, Michael Holder, Rose S. Penfold, Alexandra Birch, Beatrice Alex
Can GPT-3.5 Generate and Code Discharge Summaries? CoRR (2024)
Giorgos Lysandrou, Roma English Owen, Vanja Popovic, Grant Le Brun, Aryo Pradipta Gema, Beatrice Alex, Elizabeth A. L. Fairley
A Comparative Study on Patient Language across Therapeutic Domains for Effective Patient Voice Classification in Online Health Discussions. CoRR (2024)
Aryo Pradipta Gema, Giwon Hong, Pasquale Minervini, Luke Daines, Beatrice Alex
Edinburgh Clinical NLP at SemEval-2024 Task 2: Fine-tune your model unless you have access to GPT-4. CoRR (2024)
Aryo Pradipta Gema, Luke Daines, Pasquale Minervini, Beatrice Alex
Parameter-Efficient Fine-Tuning of LLaMA for the Clinical Domain. CoRR (2023)
Hang Dong, Víctor Suárez-Paniagua, Huayu Zhang, Minhong Wang, Arlene Casey, Emma M. Davidson, Jiaoyan Chen, Beatrice Alex, William Whiteley, Honghan Wu
Ontology-driven and weakly supervised rare disease identification from clinical notes. BMC Medical Informatics Decis. Mak. 23 (1) (2023)
Arlene Casey, Emma M. Davidson, Claire Grover, Richard Tobin, Andreas Grivas, Huayu Zhang, Patrick Schrempf, Alison Q. O'Neil, Liam Lee, Michael Walsh, Freya Pellie, Karen Ferguson, Vera Cvoro, Honghan Wu, Heather Whalley, Grant Mair, William Whiteley, Beatrice Alex
Understanding the performance and reliability of NLP tools: a comparison of four NLP tools predicting stroke phenotypes in radiology reports. Frontiers Digit. Health 5 (2023)
Huayu Zhang, Arlene Casey, Imane Guellil, Víctor Suárez-Paniagua, Clare Macrae, Charis Marwick, Honghan Wu, Bruce Guthrie, Beatrice Alex
FLAP: a framework for linking free-text addresses to the Ordnance Survey Unique Property Reference Number database. Frontiers Digit. Health 5 (2023)
Lucy Havens, Rachel Hosker, Beatrice Alex, Benjamin Bach, Melissa Terras
Collaboration Across the Archival and Computational Sciences to Address Legacies of Gender Bias in Descriptive Metadata. DH (2023)
Jesse Phitidis, Alison Q. O'Neil, Stewart Wiseman, David Alexander Dickie, Eleni Sakka, Agniete Kampaite, William Whiteley, Miguel O. Bernabeu, Beatrice Alex, Joanna M. Wardlaw, Maria del C. Valdés Hernández
Segmentation of White Matter Hyperintensities and Ischaemic Stroke Lesions in Structural MRI. MIUA (2023)
Giorgos Lysandrou, Roma English Owen, Vanja Popovic, Grant Le Brun, Beatrice Alex, Elizabeth A. L. Fairley
Classifying patient voice in social media data using neural networks: A comparison of AI models on different data sources and therapeutic domains. CoRR (2023)
Honghan Wu, Minhong Wang, Jinge Wu, Farah Francis, Yun-Hsuan Chang, Alex Shavick, Hang Dong, Michael T. C. Poon, Natalie K. Fitzpatrick, Adam P. Levine, Luke T. Slater, Alex Handy, Andreas Karwath, Georgios V. Gkoutos, Claude Chelala, Anoop D. Shah, Robert Stewart, Nigel Collier, Beatrice Alex, William Whiteley, Cathie Sudlow, Angus Roberts, Richard J. B. Dobson
A survey on clinical natural language processing in the United Kingdom from 2007 to 2022. npj Digit. Medicine 5 (2022)
Hang Dong, Matús Falis, William Whiteley, Beatrice Alex, Joshua Matterson, Shaoxiong Ji, Jiaoyan Chen, Honghan Wu
Automated clinical coding: what, why, and where we are? npj Digit. Medicine 5 (2022)
Lucy Havens, Benjamin Bach, Melissa Terras, Beatrice Alex
Beyond Explanation: A Case for Exploratory Text Visualizations of Non-Aggregated, Annotated Datasets. NLPerspectives@LREC (2022)
Imane Guellil, Jinge Wu, Honghan Wu, Tony Sun, Beatrice Alex
Edinburgh_UCL_Health@SMM4H'22: From Glove to Flair for handling imbalanced healthcare corpora related to Adverse Drug Events, Change in medication and self-reporting vaccination. SMM4H@COLING (2022)
Hang Dong, Matús Falis, William Whiteley, Beatrice Alex, Shaoxiong Ji, Jiaoyan Chen, Honghan Wu
Automated Clinical Coding: What, Why, and Where We Are? CoRR (2022)
Matús Falis, Hang Dong, Alexandra Birch, Beatrice Alex
Horses to Zebras: Ontology-Guided Data Augmentation and Synthesis for ICD-9 Coding. BioNLP@ACL (2022)
Hang Dong, Víctor Suárez-Paniagua, Huayu Zhang, Minhong Wang, Arlene Casey, Emma M. Davidson, Jiaoyan Chen, Beatrice Alex, William Whiteley, Honghan Wu
Ontology-Based and Weakly Supervised Rare Disease Phenotyping from Clinical Notes. CoRR (2022)
Beatrice Alex, Clare Llewellyn, Pawel Michal Orzechowski, Maria Boutchkova
The Online Pivot: Lessons Learned from Teaching a Text and Data Mining Course in Lockdown, Enhancing online Teaching with Pair Programming and Digital Badges. CoRR (2021)
Emma M. Davidson, Michael T. C. Poon, Arlene Casey, Andreas Grivas, Daniel Duma, Hang Dong, Víctor Suárez-Paniagua, Claire Grover, Richard Tobin, Heather Whalley, Honghan Wu, Beatrice Alex, William Whiteley
The reporting quality of natural language processing studies: systematic review of studies of radiology reports. BMC Medical Imaging 21 (1) (2021)
Arlene Casey, Emma M. Davidson, Michael T. C. Poon, Hang Dong, Daniel Duma, Andreas Grivas, Claire Grover, Víctor Suárez-Paniagua, Richard Tobin, William Whiteley, Honghan Wu, Beatrice Alex
A systematic review of natural language processing applied to radiology reports. BMC Medical Informatics Decis. Mak. 21 (1) (2021)
Matús Falis, Hang Dong, Alexandra Birch, Beatrice Alex
CoPHE: A Count-Preserving Hierarchical Evaluation Metric in Large-Scale Multi-Label Text Classification. EMNLP (1) (2021)
Beatrice Alex, Donald Whyte, Daniel Duma, Roma English Owen, Elizabeth A. L. Fairley
Classifying patient and professional voice in social media health posts. BMC Medical Informatics Decis. Mak. 21 (1) (2021)
Rosa Filgueira, Claire Grover, Vasilios Karaiskos, Beatrice Alex, Sarah Van Eyndhoven, Lisa Gotthard, Melissa Terras
Extending defoe for the Efficient Analysis of Historical Texts at Scale. e-Science (2021)
Arlene Casey, Emma M. Davidson, Michael T. C. Poon, Hang Dong, Daniel Duma, Andreas Grivas, Claire Grover, Víctor Suárez-Paniagua, Richard Tobin, William Whiteley, Honghan Wu, Beatrice Alex
A Systematic Review of Natural Language Processing Applied to Radiology Reports. CoRR (2021)
Arlene Casey, Mike Bennett, Richard Tobin, Claire Grover, Iona Walker, Lukas Engelmann, Beatrice Alex
Plague Dot Text: Text mining and annotation of outbreak reports of the Third Plague Pandemic (1894-1952). J. Data Min. Digit. Humanit. 2021 (2021)
D. Sykes, Andreas Grivas, Claire Grover, Richard Tobin, Cathie Sudlow, William Whiteley, Andrew M. McIntosh, Heather Whalley, Beatrice Alex
Comparison of rule-based and neural network models for negation detection in radiology reports. Nat. Lang. Eng. 27 (2) (2021)
Matús Falis, Hang Dong, Alexandra Birch, Beatrice Alex
CoPHE: A Count-Preserving Hierarchical Evaluation Metric in Large-Scale Multi-Label Text Classification. CoRR (2021)
Arlene Casey, Mike Bennett, Richard Tobin, Claire Grover, Iona Walker, Lukas Engelmann, Beatrice Alex
Plague Dot Text: Text mining and annotation of outbreak reports of the Third Plague Pandemic (1894-1952). CoRR (2020)
Lucy Havens, Melissa Terras, Benjamin Bach, Beatrice Alex
Situated Data, Situated Systems: A Methodology to Engage with Power Relations in Natural Language Processing Research. CoRR (2020)
Andreas Grivas, Beatrice Alex, Claire Grover, Richard Tobin, William Whiteley
Not a cute stroke: Analysis of Rule- and Neural Network-based Information Extraction Systems for Brain Radiology Reports. LOUHI@EMNLP (2020)
Philip John Gorinski, Honghan Wu, Claire Grover, Richard Tobin, Conn Talbot, Heather Whalley, Cathie Sudlow, William Whiteley, Beatrice Alex
Named Entity Recognition for Electronic Health Records: A Comparison of Rule-based and Machine Learning Approaches. CoRR (2019)
Beatrice Alex, Claire Grover, Richard Tobin, Cathie Sudlow, Grant Mair, William Whiteley
Text mining brain imaging reports. J. Biomed. Semant. 10 (1) (2019)
Arlene Casey, Mike Bennett, Richard Tobin, Claire Grover, Lukas Engelmann, Beatrice Alex
Plague Dot Text: Text Mining and Annotation of Outbreak Reports of the Third Plague Pandemic (1894-1952). HistoInformatics@TPDL (2019)
Beatrice Alex, Claire Grover, Richard Tobin, Jon Oberlander
Geoparsing historical and contemporary literary text set in the City of Edinburgh. Lang. Resour. Evaluation 53 (4) (2019)
Aurora Constantin, Catherine Lai, Elaine Farrow, Beatrice Alex, Ruth Pel-Littel, Henk Herman Nap, Johan Jeuring
"Why is the Doctor a Man": Reactions of Older Adults to a Virtual Training Doctor. CHI Extended Abstracts (2019)
Emily Wheater, Grant Mair, Cathie Sudlow, Beatrice Alex, Claire Grover, William Whiteley
A validated natural language processing algorithm for brain imaging phenotypes from radiology reports in UK electronic health records. BMC Medical Informatics Decis. Mak. 19 (1) (2019)
Catherine Lai, Beatrice Alex, Johanna D. Moore, Leimin Tian, Tatsuro Hori, Gianpiero Francesca
Detecting Topic-Oriented Speaker Stance in Conversational Speech. INTERSPEECH (2019)
Beatrice Alex, Claire Grover, Jon Oberlander, Tara Thomson, Miranda Anderson, James Loxley, Uta Hinrichs, Ke Zhou
Palimpsest: Improving assisted curation of loco-specific literature. Digit. Scholarsh. Humanit. 32 (suppl_1) (2017)
Beatrice Alex, Clare Llewellyn, Claire Grover, Jon Oberlander, Richard Tobin
Homing in on Twitter Users: Evaluating an Enhanced Geoparser for User Profile Locations. LREC (2016)
Beatrice Alex, Kate Byrne, Claire Grover, Richard Tobin
Adapting the Edinburgh Geoparser for Historical Georeferencing. Int. J. Humanit. Arts Comput. 9 (1) (2015)
Clare Llewellyn, Claire Grover, Beatrice Alex, Jon Oberlander, Richard Tobin
Extracting a Topic Specific Dataset from a Twitter Archive. TPDL (2015)
Uta Hinrichs, Beatrice Alex, Jim Clifford, Andrew Watson, Aaron J. Quigley, Ewan Klein, Colin Coates
Trading Consequences: A Case Study of Combining Text Mining and Visualization to Facilitate Document Exploration. Digit. Scholarsh. Humanit. 30 (Suppl-1) (2015)
Ewan Klein, Beatrice Alex, Jim Clifford
Bootstrapping a historical commodities lexicon with SKOS and DBpedia. LaTeCH@EACL (2014)
Uta Hinrichs, Beatrice Alex, Jim Clifford, Aaron Quigley
Trading Consequences: A Case Study of Combining Text Mining & Visualisation to Facilitate Document Exploration. DH (2014)
Beatrice Alex, John Burns
Estimating and rating the quality of optically character recognised text. DATeCH (2014)
Beatrice Alex, Kate Byrne, Claire Grover, Richard Tobin
A Web-based Geo-resolution Annotation and Evaluation Tool. LAW@COLING (2014)
Beatrice Alex, Claire Grover, Ewan Klein, Richard Tobin
Digitised historical text: Does it have to be mediOCRe?. KONVENS (2012)
Beatrice Alex, Claire Grover, Rongzhou Shen, Mijail A. Kabadjov
Agile Corpus Annotation in Practice: An Overview of Manual and Automatic Annotation of CVs. Linguistic Annotation Workshop (2010)
Claire Grover, Richard Tobin, Beatrice Alex, Kate Byrne
Edinburgh-LTG: TempEval-2 System Description. SemEval@ACL (2010)
Barry Haddow, Beatrice Alex
Exploiting Multiply Annotated Corpora in Biomedical Information Extraction Tasks. LREC (2008)
Beatrice Alex, Claire Grover, Barry Haddow, Mijail Kabadjor, Ewan Klein, Michael Matthews, Stuart Roebuck, Richard Tobin, Xinglong Wang
Assisted Curation: Does Text Mining Really Help?. Pacific Symposium on Biocomputing (2008)
Beatrice Alex
Comparing Corpus-based to Web-based Lookup Techniques for Automatic English Inclusion Detection. LREC (2008)
Beatrice Alex, Amit Dubey, Frank Keller
Using Foreign Inclusion Detection to Improve Parsing Performance. EMNLP-CoNLL (2007)
Beatrice Alex, Barry Haddow, Claire Grover
Recognising Nested Named Entities in Biomedical Text. BioNLP@ACL (2007)
Beatrice Alex, Malvina Nissim, Claire Grover
The Impact of Annotation on the Performance of Protein Tagging in Biomedical Text. LREC (2006)
Ben Hachey, Beatrice Alex, Markus Becker
Investigating the Effects of Selective Sampling on the Annotation Task. CoNLL (2005)
Jenny Rose Finkel, Shipra Dingare, Christopher D. Manning, Malvina Nissim, Beatrice Alex, Claire Grover
Exploring the boundaries: gene and protein identification in biomedical text. BMC Bioinform. 6 (S-1) (2005)
Beatrice Alex
An Unsupervised System for Identifying English Inclusions in German Text. ACL (2005)
Kisuh Ahn, Beatrice Alex, Johan Bos, Tiphaine Dalmas, Jochen L. Leidner, Matthew Smillie
Cross-Lingual Question Answering Using Off-the-Shelf Machine Translation. CLEF (2004)

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Publication Activity (10 Years)

Top Topics

Top Venues

Beatrice Alex