Anika Oellrich

Publication Activity (10 Years)

Years Active: 2010-2017
Publications (10 Years): 9

Top Topics

Transcriptional Regulatory

Scientific Articles

Top Venues

J. Biomed. Semant.

Database J. Biol. Databases Curation

CLPsych@HLT-NAACL

Publications

Hui Wang, Quan Sun, Anika Oellrich, Honghan Wu, Richard J. B. Dobson
The psycho-env corpus: research articles annotated for knowledge discovery on correlating mental diseases and environmental factors. KHD@IJCAI (2017)
Honghan Wu, Anika Oellrich, Christine Girges, Bernard de Bono, Tim J. P. Hubbard, Richard J. B. Dobson
Automated PDF highlighting to support faster curation of literature for Parkinson's and Alzheimer's disease. Database J. Biol. Databases Curation 2017 (2017)
Anika Oellrich, Terrence F. Meehan, Helen E. Parkinson, Sirarat Sarntivijai, Jacqueline K. White, Natasha A. Karp
Reporting phenotypes in mouse models when considering body size as a potential confounder. J. Biomed. Semant. 7 (2016)
James Ravenscroft, Anika Oellrich, Shyamasree Saha, Maria Liakata
Multi-label Annotation in Scientific Articles - The Multi-label Cancer Risk Assessment Corpus. LREC (2016)
Anika Oellrich, Nigel Collier, Tudor Groza, Dietrich Rebholz-Schuhmann, Nigam Shah, Olivier Bodenreider, Mary Regina Boland, Ivo I. Georgiev, Hongfang Liu, Kevin M. Livingston, Augustin Luna, Ann-Marie Mallon, Prashanti Manda, Peter N. Robinson, Gabriella Rustici, Michelle Simon, Liqin Wang, Rainer Winnenburg, Michel Dumontier
The digital revolution in phenotyping. Briefings Bioinform. 17 (5) (2016)
Matthias König, Anika Oellrich, Dagmar Waltemath, Richard J. B. Dobson, Tim J. P. Hubbard, Olaf Wolkenhauer
Challenges and opportunities for system biology standards and tools in medical research. ODLS (2016)
George Gkotsis, Sumithra Velupillai, Anika Oellrich, Harry Dean, Maria Liakata, Rina Dutta
Don't Let Notes Be Misunderstood: A Negation Detection Method for Assessing Risk of Suicide in Mental Health Records. CLPsych@HLT-NAACL (2016)
Karin Verspoor, Anika Oellrich, Nigel Collier, Tudor Groza, Philippe Rocca-Serra, Larisa N. Soldatova, Michel Dumontier, Nigam Shah
Thematic issue of the Second combined Bio-ontologies and Phenotypes Workshop. J. Biomed. Semant. 7 (2016)
George Gkotsis, Anika Oellrich, Tim J. P. Hubbard, Richard J. B. Dobson, Maria Liakata, Sumithra Velupillai, Rina Dutta
The language of mental health problems in social media. CLPsych@HLT-NAACL (2016)
Larisa N. Soldatova, Nigel Collier, Anika Oellrich, Tudor Groza, Karin Verspoor, Philippe Rocca-Serra, Michel Dumontier, Nigam H. Shah
Special issue on bio-ontologies and phenotypes. J. Biomed. Semant. 6 (2015)
Irene Papatheodorou, Anika Oellrich, Damian Smedley
Linking gene expression to phenotypes via pathway information. J. Biomed. Semant. 6 (2015)
Tudor Groza, Sebastian Köhler, Sandra C. Doelken, Nigel Collier, Anika Oellrich, Damian Smedley, Francisco M. Couto, Gareth Baynam, Andreas Zankl, Peter N. Robinson
Automatic concept recognition using the Human Phenotype Ontology reference and test suite corpora. Database J. Biol. Databases Curation 2015 (2015)
Nigel Collier, Anika Oellrich, Tudor Groza
Concept selection for phenotypes and diseases using learn to rank. J. Biomed. Semant. 6 (2015)
Nigel Collier, Tudor Groza, Damian Smedley, Peter N. Robinson, Anika Oellrich, Dietrich Rebholz-Schuhmann
PhenoMiner: from text to a database of phenotypes associated with OMIM diseases. Database J. Biol. Databases Curation 2015 (2015)
Anika Oellrich, Damian Smedley
Linking tissues to phenotypes using gene expression profiles. Database J. Biol. Databases Curation 2014 (2014)
Anika Oellrich, Julius O. B. Jacobsen, Irene Papatheodorou, Damian Smedley
Using association rule mining to determine promising secondary phenotyping hypotheses. Bioinform. 30 (12) (2014)
Anika Oellrich, Sebastian Köhler, Nicole L. Washington, Chris Mungall, Suzanna Lewis, Melissa A. Haendel, Peter N. Robinson, Damian Smedley
The influence of disease categories on gene candidate predictions from model organism phenotypes. J. Biomed. Semant. 5 (S-1) (2014)
Anika Oellrich, Christoph Grabmüller, Dietrich Rebholz-Schuhmann
Automatically transforming pre- to post-composed phenotypes: EQ-lising HPO and MP. J. Biomed. Semant. 4 (2013)
Damian Smedley, Anika Oellrich, Sebastian Köhler, Barbara J. Ruef, Monte Westerfield, Peter N. Robinson, Suzanna Lewis, Christopher J. Mungall
PhenoDigm: analyzing curated annotations to associate animal models with human diseases. Database J. Biol. Databases Curation 2013 (2013)
Tudor Groza, Anika Oellrich, Nigel Collier
Using silver and semi-gold standard corpora to compare open named entity recognisers. BIBM (2013)
Robert Hoehndorf, Anika Oellrich, Dietrich Rebholz-Schuhmann, Paul N. Schofield, Georgios V. Gkoutos
Linking PharmGKB to Phenotype Studies and Animal Models of Disease for Drug Repurposing. Pacific Symposium on Biocomputing (2012)
Anika Oellrich, Georgios V. Gkoutos, Robert Hoehndorf, Dietrich Rebholz-Schuhmann
Quantitative comparison of mapping methods between Human and Mammalian Phenotype Ontology. J. Biomed. Semant. 3 (S-2) (2012)
Nigel Collier, Mai-Vu Tran, Hoang-Quynh Le, Anika Oellrich, Ai Kawazoe, Martin Hall-May, Dietrich Rebholz-Schuhmann
A Hybrid Approach to Finding Phenotype Candidates in Genetic Texts. COLING (2012)
Robert Hoehndorf, Axel-Cyrille Ngonga Ngomo, Sampo Pyysalo, Tomoko Ohta, Anika Oellrich, Dietrich Rebholz-Schuhmann
Ontology design patterns to disambiguate relations between genes and gene products in GENIA. J. Biomed. Semant. 2 (S-5) (2011)
Robert Hoehndorf, Michel Dumontier, Anika Oellrich, Sarala M. Wimalaratne, Dietrich Rebholz-Schuhmann, Paul N. Schofield, Georgios V. Gkoutos
A common layer of interoperability for biomedical ontologies based on OWL EL. Bioinform. 27 (7) (2011)
Amanda Clare, Samuel Croset, Christoph Grabmüller, Senay Kafkas, Maria Liakata, Anika Oellrich, Dietrich Rebholz-Schuhmann
Exploring the Generation and Integration of Publishable Scientific Facts Using the Concept of Nano-publications. SePublica (2011)
Robert Hoehndorf, Anika Oellrich, Dietrich Rebholz-Schuhmann
Interoperability between phenotype and anatomy ontologies. Bioinform. 26 (24) (2010)
Robert Hoehndorf, Anika Oellrich, Michel Dumontier, Janet Kelso, Dietrich Rebholz-Schuhmann, Heinrich Herre
Relations as patterns: bridging the gap between OBO and OWL. BMC Bioinform. 11 (2010)
Robert Hoehndorf, Axel-Cyrille Ngonga Ngomo, Sampo Pyysalo, Tomoko Ohta, Anika Oellrich, Dietrich Rebholz-Schuhmann
Applying ontology design patterns to the implementation of relations in GENIA. Semantic Mining in Biomedicine (2010)
Robert Hoehndorf, Anika Oellrich, Michel Dumontier, Heinrich Herre, Dietrich Rebholz-Schuhmann
Relational Patterns in OWL and Their Application to OBO. OWLED (2010)