Sarala M. Wimalaratne

Publication Activity (10 Years)

Years Active: 2009-2021
Publications (10 Years): 5

Top Topics

Semantic Interoperability

Domain Specific Ontologies

Probability Distribution

Top Venues

Nucleic Acids Res.

BMC Syst. Biol.

Publications

Manuel Bernal Llinares, Javier Ferrer-Gómez, Nick S. Juty, Carole A. Goble, Sarala M. Wimalaratne, Henning Hermjakob
Identifiers.org: Compact Identifier services in the cloud. Bioinform. 37 (12) (2021)
Nick S. Juty, Sarala M. Wimalaratne, Stian Soiland-Reyes, John A. Kunze, Carole A. Goble, Tim Clark
Unique, Persistent, Resolvable: Identifiers as the Foundation of FAIR. Data Intell. 2 (1-2) (2020)
Toshiaki Katayama, Shuichi Kawashima, Gos Micklem, Shin Kawano, Jin-Dong Kim, Simon Kocbek, Shinobu Okamoto, Yue Wang, Hongyan Wu, Atsuko Yamaguchi, Yasunori Yamamoto, Erick Antezana, Kiyoko F. Aoki-Kinoshita, Kazuharu Arakawa, Masaki Banno, Joachim Baran, Jerven T. Bolleman, Raoul Jean Pierre Bonnal, Hidemasa Bono, Jesualdo Tomás Fernández-Breis, Robert M. Buels, Matthew P. Campbell, Hirokazu Chiba, Peter J. A. Cock, Kevin Bretonnel Cohen, Michel Dumontier, Takatomo Fujisawa, Toyofumi Fujiwara, Leyla J. García, Pascale Gaudet, Emi Hattori, Robert Hoehndorf, Kotone Itaya, Maori Ito, Daniel Jamieson, Simon Jupp, Nick S. Juty, Alex Kalderimis, Fumihiro Kato, Hideya Kawaji, Takeshi Kawashima, Akira R. Kinjo, Yusuke Komiyama, Masaaki Kotera, Tatsuya Kushida, James Malone, Masaaki Matsubara, Satoshi Mizuno, Sayaka Mizutani, Hiroshi Mori, Yuki Moriya, Katsuhiko Murakami, Takeru Nakazato, Hiroyo Nishide, Yosuke Nishimura, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Hiromasa Ono, Yasset Pérez-Riverol, Daisuke Shinmachi, Andrea Splendiani, Francesco Strozzi, Shinya Suzuki, Junichi Takehara, Mark Thompson, Toshiaki Tokimatsu, Ikuo Uchiyama, Karin Verspoor, Mark D. Wilkinson, Sarala M. Wimalaratne, Issaku Yamada, Nozomi Yamamoto, Masayuki Yarimizu, Shoko Kawamoto, Toshihisa Takagi
BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services. F1000Research 8 (2019)
Mihai Glont, Tung V. N. Nguyen, Martin Graesslin, Robert Hälke, Raza Ali, Jochen Schramm, Sarala M. Wimalaratne, Varun B. Kothamachu, Nicolas Rodriguez, Maciej J. Swat, Jurgen Eils, Roland Eils, Camille Laibe, Rahuman S. Malik-Sheriff, Vijayalakshmi Chelliah, Nicolas Le Novère, Henning Hermjakob
BioModels: expanding horizons to include more modelling approaches and formats. Nucleic Acids Res. 46 (Database-Issue) (2018)
Maciej J. Swat, Pierre Grenon, Sarala M. Wimalaratne
ProbOnto: ontology and knowledge base of probability distributions. Bioinform. 32 (17) (2016)
Vijayalakshmi Chelliah, Nick S. Juty, Ishan Ajmera, Raza Ali, Marine Dumousseau, Mihai Glont, Michael Hucka, Gaël Jalowicki, Sarah M. Keating, Vincent Knight-Schrijver, Audald Lloret-Villas, Kedar Nath Natarajan, Jean-Baptiste Pettit, Nicolas Rodriguez, Michael Schubert, Sarala M. Wimalaratne, Yangyang Zhao, Henning Hermjakob, Nicolas Le Novère, Camille Laibe
BioModels: ten-year anniversary. Nucleic Acids Res. 43 (Database-Issue) (2015)
Sarala M. Wimalaratne, Jerven T. Bolleman, Nick S. Juty, Toshiaki Katayama, Michel Dumontier, Nicole Redaschi, Nicolas Le Novère, Henning Hermjakob, Camille Laibe
SPARQL-enabled identifier conversion with Identifiers.org. Bioinform. 31 (11) (2015)
Sarala M. Wimalaratne, Pierre Grenon, Henning Hermjakob, Nicolas Le Novère, Camille Laibe
BioModels linked dataset. BMC Syst. Biol. 8 (2014)
Simon Jupp, James Malone, Jerven T. Bolleman, Marco Brandizi, Mark Davies, Leyla J. García, Anna Gaulton, Sebastien Gehant, Camille Laibe, Nicole Redaschi, Sarala M. Wimalaratne, Maria Jesus Martin, Nicolas Le Novère, Helen E. Parkinson, Ewan Birney, Andrew M. Jenkinson
The EBI RDF platform: linked open data for the life sciences. Bioinform. 30 (9) (2014)
Sarala M. Wimalaratne, Pierre Grenon, Robert Hoehndorf, Georgios V. Gkoutos, Bernard de Bono
An infrastructure for ontology-based information systems in biomedicine: RICORDO case study. Bioinform. 28 (3) (2012)
Pierre Grenon, Sarala M. Wimalaratne, Bernard de Bono
Ontology-Strength Industry Standards: The Case of the Clinical Trial Domain. FOMI (2011)
Robert Hoehndorf, Michel Dumontier, John H. Gennari, Sarala M. Wimalaratne, Bernard de Bono, Daniel L. Cook, Georgios V. Gkoutos
Integrating systems biology models and biomedical ontologies. BMC Syst. Biol. 5 (2011)
Goksel Misirli, Jennifer Hallinan, Tommy Yu, James R. Lawson, Sarala M. Wimalaratne, Mike T. Cooling, Anil Wipat
Model annotation for synthetic biology: automating model to nucleotide sequence conversion. Bioinform. 27 (7) (2011)
Robert Hoehndorf, Michel Dumontier, Anika Oellrich, Sarala M. Wimalaratne, Dietrich Rebholz-Schuhmann, Paul N. Schofield, Georgios V. Gkoutos
A common layer of interoperability for biomedical ontologies based on OWL EL. Bioinform. 27 (7) (2011)
Andrew K. Miller, Tommy Yu, Randall Britten, Mike T. Cooling, James R. Lawson, Dougal Cowan, Alan Garny, Matt D. B. Halstead, Peter J. Hunter, David P. Nickerson, Geoff Nunns, Sarala M. Wimalaratne, Poul M. F. Nielsen
Revision history aware repositories of computational models of biological systems. BMC Bioinform. 12 (2011)
Sarala M. Wimalaratne, Matt D. B. Halstead, Catherine M. Lloyd, Edmund J. Crampin, Poul M. F. Nielsen
Biophysical annotation and representation of CellML models. Bioinform. 25 (17) (2009)
Sarala M. Wimalaratne, Matt D. B. Halstead, Catherine M. Lloyd, Mike T. Cooling, Edmund J. Crampin, Poul M. F. Nielsen
A method for visualizing CellML models. Bioinform. 25 (22) (2009)