Hirokazu Chiba

Publication Activity (10 Years)

Years Active: 2011-2023
Publications (10 Years): 20

Top Topics

Top Venues

J. Biomed. Semant.

Publications

Hirokazu Chiba
Formatting SPARQL 1.1 via Parsing Expression Grammar. IJCKG (Workshop/Poster/Demo) (2023)
Tarcisio Mendes de Farias, Tatsuya Kushida, Ana Claudia Sima, Christophe Dessimoz, Hirokazu Chiba, Frédéric B. Bastian, Hiroshi Masuya
Data in use for Alzheimer disease study: combining gene expression, orthology, bioresource and disease datasets. SWAT4HCLS (2023)
Shuya Ikeda, Hiromasa Ono, Tazro Ohta, Hirokazu Chiba, Yuki Naito, Yuki Moriya, Shuichi Kawashima, Yasunori Yamamoto, Shinobu Okamoto, Susumu Goto, Toshiaki Katayama
TogoID: an exploratory ID converter to bridge biological datasets. Bioinform. 38 (17) (2022)
Hirokazu Chiba, Ryota Yamanaka, Shota Matsumoto
G2GML: Graph to Graph Mapping Language for Bridging RDF and Property Graphs. CoRR (2022)
Rutger A. Vos, Toshiaki Katayama, Hiroyuki Mishima, Shin Kawano, Shuichi Kawashima, Jin-Dong Kim, Yuki Moriya, Toshiaki Tokimatsu, Atsuko Yamaguchi, Yasunori Yamamoto, Hongyan Wu, Peter Amstutz, Erick Antezana, Nobuyuki P. Aoki, Kazuharu Arakawa, Jerven T. Bolleman, Evan E. Bolton, Raoul Jean Pierre Bonnal, Hidemasa Bono, Kees Burger, Hirokazu Chiba, Kevin Bretonnel Cohen, Eric W. Deutsch, Jesualdo Tomás Fernández-Breis, Gang Fu, Takatomo Fujisawa, Atsushi Fukushima, Alexander García Castro, Naohisa Goto, Tudor Groza, Colin Hercus, Robert Hoehndorf, Kotone Itaya, Nick S. Juty, Takeshi Kawashima, Jee-Hyub Kim, Akira R. Kinjo, Masaaki Kotera, Kouji Kozaki, Sadahiro Kumagai, Tatsuya Kushida, Thomas Lütteke, Masaaki Matsubara, Joe Miyamoto, Attayeb Mohsen, Hiroshi Mori, Yuki Naito, Takeru Nakazato, Jeremy NguyenXuan, Kozo Nishida, Naoki Nishida, Hiroyo Nishide, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Benedict Paten, Jean-Luc Perret, Philip Prathipati, Pjotr Prins, Núria Queralt-Rosinach, Daisuke Shinmachi, Shinya Suzuki, Tsuyosi Tabata, Terue Takatsuki, Kieron R. Taylor, Mark Thompson, Ikuo Uchiyama, Bruno Vieira, Chih-Hsuan Wei, Mark D. Wilkinson, Issaku Yamada, Ryota Yamanaka, Kazutoshi Yoshitake, Akiyasu C. Yoshizawa, Michel Dumontier, Kenjiro Kosaki, Toshihisa Takagi
BioHackathon 2015: Semantics of data for life sciences and reproducible research. F1000Research 9 (2020)
Hirokazu Chiba, Ryota Yamanaka, Shota Matsumoto
G2GML: Graph to Graph Mapping Language for Bridging RDF and Property Graphs. ISWC (2) (2020)
Hirokazu Chiba
SPANG: A SPARQL client with templating, one-liner functionality, and API. ISWC (Demos/Industry) (2020)
Hirokazu Chiba, Ryota Yamanaka, Shota Matsumoto
G2GML: Graph to Graph Mapping Language for Bridging RDF and Property Graphs. ISWC (Demos/Industry) (2020)
Toshiaki Katayama, Shuichi Kawashima, Gos Micklem, Shin Kawano, Jin-Dong Kim, Simon Kocbek, Shinobu Okamoto, Yue Wang, Hongyan Wu, Atsuko Yamaguchi, Yasunori Yamamoto, Erick Antezana, Kiyoko F. Aoki-Kinoshita, Kazuharu Arakawa, Masaki Banno, Joachim Baran, Jerven T. Bolleman, Raoul Jean Pierre Bonnal, Hidemasa Bono, Jesualdo Tomás Fernández-Breis, Robert M. Buels, Matthew P. Campbell, Hirokazu Chiba, Peter J. A. Cock, Kevin Bretonnel Cohen, Michel Dumontier, Takatomo Fujisawa, Toyofumi Fujiwara, Leyla J. García, Pascale Gaudet, Emi Hattori, Robert Hoehndorf, Kotone Itaya, Maori Ito, Daniel Jamieson, Simon Jupp, Nick S. Juty, Alex Kalderimis, Fumihiro Kato, Hideya Kawaji, Takeshi Kawashima, Akira R. Kinjo, Yusuke Komiyama, Masaaki Kotera, Tatsuya Kushida, James Malone, Masaaki Matsubara, Satoshi Mizuno, Sayaka Mizutani, Hiroshi Mori, Yuki Moriya, Katsuhiko Murakami, Takeru Nakazato, Hiroyo Nishide, Yosuke Nishimura, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Hiromasa Ono, Yasset Pérez-Riverol, Daisuke Shinmachi, Andrea Splendiani, Francesco Strozzi, Shinya Suzuki, Junichi Takehara, Mark Thompson, Toshiaki Tokimatsu, Ikuo Uchiyama, Karin Verspoor, Mark D. Wilkinson, Sarala M. Wimalaratne, Issaku Yamada, Nozomi Yamamoto, Masayuki Yarimizu, Shoko Kawamoto, Toshihisa Takagi
BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services. F1000Research 8 (2019)
Toshiaki Katayama, Shuichi Kawashima, Shinobu Okamoto, Yuki Moriya, Hirokazu Chiba, Yuki Naito, Takatomo Fujisawa, Hiroshi Mori, Toshihisa Takagi
TogoGenome/TogoStanza: modularized Semantic Web genome database. Database J. Biol. Databases Curation 2019 (2019)
Ikuo Uchiyama, Motohiro Mihara, Hiroyo Nishide, Hirokazu Chiba, Masaki Kato
MBGD update 2018: microbial genome database based on hierarchical orthology relations covering closely related and distantly related comparisons. Nucleic Acids Res. 47 (Database-Issue) (2019)
Hirokazu Chiba, Ryota Yamanaka, Shota Matsumoto
Property Graph Exchange Format. CoRR (2019)
Shota Matsumoto, Ryota Yamanaka, Hirokazu Chiba
Mapping RDF Graphs to Property Graphs. CoRR (2018)
Shota Matsumoto, Ryota Yamanaka, Hirokazu Chiba
Mapping RDF Graphs to Property Graphs. JIST (Workshops & Posters) (2018)
Hirokazu Chiba, Ikuo Uchiyama
SPANG: a SPARQL client supporting generation and reuse of queries for distributed RDF databases. BMC Bioinform. 18 (1) (2017)
Tarcisio M. Farias, Hirokazu Chiba, Jesualdo Tomás Fernández-Breis
Leveraging Logical Rules for Efficacious Representation of Large Orthology Datasets. SWAT4LS (2017)
Jesualdo Tomás Fernández-Breis, Hirokazu Chiba, María Del Carmen Legaz-García, Ikuo Uchiyama
The Orthology Ontology: development and applications. J. Biomed. Semant. 7 (2016)
Ikuo Uchiyama, Motohiro Mihara, Hiroyo Nishide, Hirokazu Chiba
MBGD update 2015: microbial genome database for flexible ortholog analysis utilizing a diverse set of genomic data. Nucleic Acids Res. 43 (Database-Issue) (2015)
Hirokazu Chiba, Ikuo Uchiyama
SPANG: A Command-line Client Supporting Query Generation for Distributed SPARQL Endpoints. SWAT4LS (2015)
Jesualdo Tomás Fernández-Breis, María Del Carmen Legaz-García, Hirokazu Chiba, Ikuo Uchiyama
Towards the Semantic Standardization of Orthology Content. SWAT4LS (2015)
Hirokazu Chiba, Ikuo Uchiyama
Improvement of domain-level ortholog clustering by optimizing domain-specific sum-of-pairs score. BMC Bioinform. 15 (2014)
Toshiaki Katayama, Mark D. Wilkinson, Kiyoko F. Aoki-Kinoshita, Shuichi Kawashima, Yasunori Yamamoto, Atsuko Yamaguchi, Shinobu Okamoto, Shin Kawano, Jin-Dong Kim, Yue Wang, Hongyan Wu, Yoshinobu Kano, Hiromasa Ono, Hidemasa Bono, Simon Kocbek, Jan Aerts, Yukie Akune, Erick Antezana, Kazuharu Arakawa, Bruno Aranda, Joachim Baran, Jerven T. Bolleman, Raoul Jean Pierre Bonnal, Pier Luigi Buttigieg, Matthew P. Campbell, Yi-an Chen, Hirokazu Chiba, Peter J. A. Cock, Kevin Bretonnel Cohen, Alexandru Constantin
BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains. J. Biomed. Semant. 5 (2014)
Ikuo Uchiyama, Motohiro Mihara, Hiroyo Nishide, Hirokazu Chiba
MBGD update 2013: the microbial genome database for exploring the diversity of microbial world. Nucleic Acids Res. 41 (Database-Issue) (2013)
Akiko Hatano, Hirokazu Chiba, Harry Amri Moesa, Takeaki Taniguchi, Satoshi Nagaie, Koji Yamanegi, Takako Takai-Igarashi, Hiroshi Tanaka, Wataru Fujibuchi
CELLPEDIA: a repository for human cell information for cell studies and differentiation analyses. Database J. Biol. Databases Curation 2011 (2011)