Jan Aerts

Publication Activity (10 Years)

Years Active: 2009-2024
Publications (10 Years): 24

Top Topics

Interactive Visualization

Clustering Algorithm

Gene Regulatory

Data Visualization

Top Venues

EuroVis (Posters)

IEEE Trans. Vis. Comput. Graph.

Frontiers Bioinform.

Publications

Benjamin Bach, Mandy Keck, Fateme Rajabiyazdi, Tatiana Losev, Isabel Meirelles, Jason Dykes, Robert S. Laramee, Mashael AlKadi, Christina Stoiber, Samuel Huron, Charles Perin, Luiz Morais, Wolfgang Aigner, Doris Kosminsky, Magdalena Boucher, Søren Knudsen, Areti Manataki, Jan Aerts, Uta Hinrichs, Jonathan C. Roberts, Sheelagh Carpendale
Challenges and Opportunities in Data Visualization Education: A Call to Action. IEEE Trans. Vis. Comput. Graph. 30 (1) (2024)
Daniël M. Bot, Jan Aerts
Lens functions for exploring UMAP Projections with Domain Knowledge. CoRR (2024)
Jannes Peeters, Daniël M. Bot, Gustavo Alberto Rovelo Ruiz, Jan Aerts
Snowflake: visualizing microbiome abundance tables as multivariate bipartite graphs. Frontiers Bioinform. 4 (2024)
Benjamin Bach, Mandy Keck, Fateme Rajabiyazdi, Tatiana Losev, Isabel Meirelles, Jason Dykes, Robert S. Laramee, Mashael AlKadi, Christina Stoiber, Samuel Huron, Charles Perin, Luiz Morais, Wolfgang Aigner, Doris Kosminsky, Magdalena Boucher, Søren Knudsen, Areti Manataki, Jan Aerts, Uta Hinrichs, Jonathan C. Roberts, Sheelagh Carpendale
Challenges and Opportunities in Data Visualization Education: A Call to Action. CoRR (2023)
Daniël M. Bot, Jannes Peeters, Jan Aerts
The Challenge of Branch-Aware Data Manifold Exploration. EuroVis (Posters) (2023)
Daniël M. Bot, Jannes Peeters, Jori Liesenborgs, Jan Aerts
FLASC: A Flare-Sensitive Clustering Algorithm: Extending HDBSCAN* for Detecting Branches in Clusters. CoRR (2023)
Georgia Panagiotidou, Jeroen Poblome, Jan Aerts, Andrew Vande Moere
Designing a Data Visualisation for Interdisciplinary Scientists. How to Transparently Convey Data Frictions? Comput. Support. Cooperative Work. 31 (4) (2022)
Dries Heylen, Jannes Peeters, Gökhan Ertaylan, Jef Hooyberghs, Jan Aerts
MOBS - Multi-Omics Brush for Subgraph Visualisation. EuroVis (Posters) (2022)
Jannes Peeters, Olivier Thas, Ziv Shkedy, Leyla Kodalci, Connie Musisi, Olajumoke Evangelina Owokotomo, Aleksandra Dyczko, Ibrahim Hamad, Jaco Vangronsveld, Markus Kleinewietfeld, Sofie Thijs, Jan Aerts
Exploring the Microbiome Analysis and Visualization Landscape. Frontiers Bioinform. 1 (2021)
Daniel Alcaide, Jan Aerts
A visual analytic approach for the identification of ICU patient subpopulations using ICD diagnostic codes. PeerJ Comput. Sci. 7 (2021)
Robin De Croon, Artuur Leeuwenberg, Jan Aerts, Marie-Francine Moens, Vero Vanden Abeele, Katrien Verbert
TIEVis: a Visual Analytics Dashboard for Temporal Information Extracted from Clinical Reports. IUI Companion (2021)
Daniel Alcaide, Jan Aerts
Spanning Trees as Approximation of Data Structures. IEEE Trans. Vis. Comput. Graph. 27 (10) (2021)
Jan Aerts, Jannes Peeters, Jelmer Bot, Danai Kafetzaki, Houda Lamqaddam
Remote Instruction for Data Visualization Design - A Report From the Trenches. IEEE Computer Graphics and Applications 41 (6) (2021)
Thomas Moerman, Sara Aibar Santos, Carmen Bravo González-Blas, Jaak Simm, Yves Moreau, Jan Aerts, Stein Aerts
GRNBoost2 and Arboreto: efficient and scalable inference of gene regulatory networks. Bioinform. 35 (12) (2019)
Daniel Alcaide, Jan Aerts
Improving the Projection of Global Structures in Data through Spanning Trees. CoRR (2019)
Daniel Alcaide, Jan Aerts
MCLEAN: Multilevel Clustering Exploration As Network. PeerJ Comput. Sci. 4 (2018)
Houda Lamqaddam, Jan Aerts, Koenraad Brosens, Katrien Verbert
NAHR: a visual representation of social networks as support for art history research. NordiCHI (2018)
Daniel Alcaide, Jan Aerts
Multilevel Visual Clustering Exploration for Incomplete Time-Series in Water Samples. VAST (2018)
Jan Aerts, Nils Gehlenborg, Georgeta Elisabeta Marai, Kay Katja Nieselt
Visualization of Biological Data - Crossroads (Dagstuhl Seminar 18161). Dagstuhl Reports 8 (4) (2018)
Thomas De Bodt, Bart Adams, Jan Aerts
Interactive Visualization of Massive Location Data using Multi-Scale Trajectories. EuroVis (Posters) (2017)
Daniel Alcaide, Jan Aerts
DaaG: Visual Analytics Clustering Using Network Representation. EuroVis (Posters) (2017)
Daniel Alcaide, Jan Aerts
MCLEAN: Multilevel Clustering Exploration As Network. PeerJ Prepr. 5 (2017)
Léon-Charles Tranchevent, Amin Ardeshirdavani, Sarah ElShal, Daniel Alcaide, Jan Aerts, Didier Auboeuf, Yves Moreau
Candidate gene prioritization with Endeavour. Nucleic Acids Res. 44 (Webserver-Issue) (2016)
Houda Lamqaddam, Jan Aerts
InVITe - Towards Intuitive Visualization of Iterations over Text. EuroVis (Posters) (2016)
Jan Aerts, G. Elisabeta Marai, Kay Nieselt, Cydney B. Nielsen, Marc Streit, Daniel Weiskopf
Highlights from the 5th Symposium on Biological Data Visualization: Part 1. BMC Bioinform. 16 (S11) (2015)
Ryo Sakai, Jan Aerts
Card Sorting Techniques for Domain Characterization in Problem-driven Visualization Research. EuroVis (Short Papers) (2015)
Dusan Popovic, Charalampos N. Moschopoulos, Ryo Sakai, Alejandro Sifrim, Jan Aerts, Yves Moreau, Bart De Moor
A Self-Tuning Genetic Algorithm with Applications in Biomarker Discovery. CBMS (2014)
Alvin Chua, Ryo Sakai, Jan Aerts, Andrew Vande Moere
A three step process to design visualisations for GeoTemporal analysis (VAST 2014 Mini Challenge 2). IEEE VAST (2014)
Toshiaki Katayama, Mark D. Wilkinson, Kiyoko F. Aoki-Kinoshita, Shuichi Kawashima, Yasunori Yamamoto, Atsuko Yamaguchi, Shinobu Okamoto, Shin Kawano, Jin-Dong Kim, Yue Wang, Hongyan Wu, Yoshinobu Kano, Hiromasa Ono, Hidemasa Bono, Simon Kocbek, Jan Aerts, Yukie Akune, Erick Antezana, Kazuharu Arakawa, Bruno Aranda, Joachim Baran, Jerven T. Bolleman, Raoul Jean Pierre Bonnal, Pier Luigi Buttigieg, Matthew P. Campbell, Yi-an Chen, Hirokazu Chiba, Peter J. A. Cock, Kevin Bretonnel Cohen, Alexandru Constantin
BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains. J. Biomed. Semant. 5 (2014)
Ryo Sakai, Alejandro Sifrim, Andrew Vande Moere, Jan Aerts
TrioVis: a visualization approach for filtering genomic variants of parent-child trios. Bioinform. 29 (14) (2013)
Georgios A. Pavlopoulos, Anastasis Oulas, Ernesto Iacucci, Alejandro Sifrim, Yves Moreau, Reinhard Schneider, Jan Aerts, Ioannis Iliopoulos
Unraveling genomic variation from next generation sequencing data. BioData Min. 6 (2013)
Ryo Sakai, Matthieu Moisse, Joke Reumers, Jan Aerts
Pipit: visualizing functional impacts of structural variations. Bioinform. 29 (17) (2013)
Thomas Boogaerts, Léon-Charles Tranchevent, Georgios A. Pavlopoulos, Jan Aerts, Joos Vandewalle
Visualizing high dimensional datasets using parallel coordinates: Application to gene prioritization. BIBE (2012)
Cameron Neylon, Jan Aerts, C. Titus Brown, Simon J. Coles, Les Hatton, Daniel Lemire, K. Jarrod Millman, Peter Murray-Rust, Fernando Pérez, Neil F. W. Saunders, Nigam Shah, Arfon M. Smith, Gaël Varoquaux, Egon L. Willighagen
Changing computational research. The challenges ahead. Source Code Biol. Medicine 7 (2012)
Maria Secrier, Georgios A. Pavlopoulos, Jan Aerts, Reinhard Schneider
Arena3D: visualizing time-driven phenotypic differences in biological systems. BMC Bioinform. 13 (2012)
Hiroyuki Mishima, Jan Aerts, Toshiaki Katayama, Raoul Jean Pierre Bonnal, Koh-ichiro Yoshiura
The Ruby UCSC API: accessing the UCSC genome database using Ruby. BMC Bioinform. 13 (2012)
Christopher W. Bartlett, Soo Yeon Cheong, Liping Hou, Jesse Paquette, Pek Yee Lum, Günter Jäger, Florian Battke, Corinna Vehlow, Julian Heinrich, Kay Nieselt, Ryo Sakai, Jan Aerts, William C. Ray
An eQTL biological data visualization challenge and approaches from the visualization community. BMC Bioinform. 13 (S-8) (2012)
Raoul Jean Pierre Bonnal, Jan Aerts, George Githinji, Naohisa Goto, Daniel MacLean, Chase A. Miller, Hiroyuki Mishima, Massimiliano Pagani, Ricardo Ramirez-Gonzalez, Geert Smant, Francesco Strozzi, Rob Syme, Rutger A. Vos, Trevor J. Wennblom, Ben J. Woodcroft, Toshiaki Katayama, Pjotr Prins
Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics. Bioinform. 28 (7) (2012)
Toshiaki Katayama, Mark D. Wilkinson, Rutger A. Vos, Takeshi Kawashima, Shuichi Kawashima, Mitsuteru Nakao, Yasunori Yamamoto, Hong-Woo Chun, Atsuko Yamaguchi, Shin Kawano, Jan Aerts, Kiyoko F. Aoki-Kinoshita, Kazuharu Arakawa, Bruno Aranda, Raoul Jean Pierre Bonnal, José María Fernández, Takatomo Fujisawa, Paul M. K. Gordon, Naohisa Goto, Syed Haider, Todd W. Harris, Takashi Hatakeyama, Isaac Ho, Masumi Itoh, Arek Kasprzyk, Nobuhiro Kido, Young-Joo Kim, Akira R. Kinjo, Fumikazu Konishi, Yulia Kovarskaya, Gregory Von Kuster, Alberto Labarga, Vachiranee Limviphuvadh, E. Luke McCarthy, Yasukazu Nakamura, Yunsun Nam, Kozo Nishida, Kunihiro Nishimura, Tatsuya Nishizawa, Soichi Ogishima, Tom Oinn, Shinobu Okamoto, Shujiro Okuda, Keiichiro Ono, Kazuki Oshita, Keun-Joon Park, Nicholas H. Putnam, Martin Senger, Jessica Severin, Yasumasa Shigemoto, Hideaki Sugawara, James Taylor, Oswaldo Trelles, Chisato Yamasaki, Riu Yamashita, Noriyuki Satoh, Toshihisa Takagi
The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications. J. Biomed. Semant. 2 (2011)
Francesco Strozzi, Jan Aerts
A Ruby API to query the Ensembl database for genomic features. Bioinform. 27 (7) (2011)
Georgios A. Pavlopoulos, Maria Secrier, Charalampos N. Moschopoulos, Theodoros G. Soldatos, Sophia Kossida, Jan Aerts, Reinhard Schneider, Pantelis G. Bagos
Using graph theory to analyze biological networks. BioData Min. 4 (2011)
Toshiaki Katayama, Kazuharu Arakawa, Mitsuteru Nakao, Keiichiro Ono, Kiyoko F. Aoki-Kinoshita, Yasunori Yamamoto, Atsuko Yamaguchi, Shuichi Kawashima, Hong-Woo Chun, Jan Aerts, Bruno Aranda, Lord H. Barboza, Raoul Jean Pierre Bonnal, Richard M. Bruskiewich, Jan Christian Bryne, José María Fernández, Akira Funahashi, Paul M. K. Gordon, Naohisa Goto, Andreas Groscurth, Alex Gutteridge, Richard C. G. Holland, Yoshinobu Kano, Edward A. Kawas, Arnaud Kerhornou, Eri Kibukawa, Akira R. Kinjo, Michael Kuhn, Hilmar Lapp, Heikki Lehväslaiho, Hiroyuki Nakamura, Yasukazu Nakamura, Tatsuya Nishizawa, Chikashi Nobata, Tamotsu Noguchi, Thomas M. Oinn, Shinobu Okamoto, Stuart Owen, Evangelos Pafilis, Matthew R. Pocock, Pjotr Prins, René Ranzinger, Florian Reisinger, Lukasz Salwínski, Mark J. Schreiber, Martin Senger, Yasumasa Shigemoto, Daron M. Standley, Hideaki Sugawara, Toshiyuki Tashiro, Oswaldo Trelles, Rutger A. Vos, Mark D. Wilkinson, William S. York, Christian M. Zmasek, Kiyoshi Asai, Toshihisa Takagi
The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. J. Biomed. Semant. 1 (2010)
Naohisa Goto, Pjotr Prins, Mitsuteru Nakao, Raoul Jean Pierre Bonnal, Jan Aerts, Toshiaki Katayama
BioRuby: bioinformatics software for the Ruby programming language. Bioinform. 26 (20) (2010)
Jan Aerts, Andy Law
An introduction to scripting in Ruby for biologists. BMC Bioinform. 10 (2009)