Hilmar Lapp

Publication Activity (10 Years)

Years Active: 1999-2024
Publications (10 Years): 17

Top Topics

Redescription Mining

Semantic Similarity

Caenorhabditis Elegans

Top Venues

npj Digit. Medicine

Database J. Biol. Databases Curation

Publications

Kazi Sajeed Mehrab, M. Maruf, Arka Daw, Harish Babu Manogaran, Abhilash Neog, Mridul Khurana, Bahadir Altintas, Yasin Bakis, Elizabeth G. Campolongo, Matthew J. Thompson, Xiaojun Wang, Hilmar Lapp, Wei-Lun Chao, Paula M. Mabee, Henry L. Bart Jr., Wasila M. Dahdul, Anuj Karpatne
Fish-Vista: A Multi-Purpose Dataset for Understanding & Identification of Traits from Images. CoRR (2024)
Mohannad Elhamod, Mridul Khurana, Harish Babu Manogaran, Josef C. Uyeda, Meghan A. Balk, Wasila M. Dahdul, Yasin Bakis, Henry L. Bart Jr., Paula M. Mabee, Hilmar Lapp, James P. Balhoff, Caleb Charpentier, David Carlyn, Wei-Lun Chao, Charles V. Stewart, Daniel I. Rubenstein, Tanya Y. Berger-Wolf, Anuj Karpatne
Discovering Novel Biological Traits From Images Using Phylogeny-Guided Neural Networks. KDD (2023)
Mohannad Elhamod, Mridul Khurana, Harish Babu Manogaran, Josef C. Uyeda, Meghan A. Balk, Wasila M. Dahdul, Yasin Bakis, Henry L. Bart Jr., Paula M. Mabee, Hilmar Lapp, James P. Balhoff, Caleb Charpentier, David Carlyn, Wei-Lun Chao, Charles V. Stewart, Daniel I. Rubenstein, Tanya Y. Berger-Wolf, Anuj Karpatne
Discovering Novel Biological Traits From Images Using Phylogeny-Guided Neural Networks. CoRR (2023)
Aaron Eberhart, David Carral, Pascal Hitzler, Hilmar Lapp, Sebastian Rudolph
Seed Patterns for Modeling Trees. WOP (Book) (2021)
Gaurav Vaidya, Nico Cellinese, Hilmar Lapp
JPhyloRef: a tool for testing and resolving phyloreferences. J. Open Source Softw. 6 (64) (2021)
Stephen K. Woody, David Burdick, Hilmar Lapp, Erich S. Huang
Application programming interfaces for knowledge transfer and generation in the life sciences and healthcare. npj Digit. Medicine 3 (2020)
Stephen K. Woody, David Burdick, Hilmar Lapp, Erich S. Huang
Publisher Correction: Application programming interfaces for knowledge transfer and generation in the life sciences and healthcare. npj Digit. Medicine 3 (2020)
Nomi L. Harris, Heather Wiencko, Brad Chapman, Peter J. A. Cock, Karsten Hokamp, Hilmar Lapp, Christopher J. Fields, Bastian Greshake Tzovaras
The 2018 Bioinformatics Open Source Conference (GCCBOSC 2018). F1000Research 7 (2018)
Wasila M. Dahdul, Prashanti Manda, Hong Cui, James P. Balhoff, T. Alexander Dececchi, Nizar Ibrahim, Hilmar Lapp, Todd J. Vision, Paula M. Mabee
Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems. Database J. Biol. Databases Curation 2018 (2018)
Paula M. Mabee, James P. Balhoff, Wasila M. Dahdul, Hilmar Lapp, Christopher J. Mungall, Todd J. Vision
Reasoning over Anatomical Homology in the Phenoscape KB. ICBO (2018)
Arlin Stoltzfus, Michael S. Rosenberg, Hilmar Lapp, Aidan Budd, Karen Cranston, Enrico Pontelli, Shann Oliver, Rutger A. Vos
Community and Code: Nine Lessons from Nine NESCent Hackathons. F1000Research 6 (2017)
David Carral, Pascal Hitzler, Hilmar Lapp, Sebastian Rudolph
On the Ontological Modeling of Trees. WOP@ISWC (2017)
David Carral, Pascal Hitzler, Hilmar Lapp, Sebastian Rudolph
On the Ontological Modeling of Trees. CoRR (2017)
Nomi L. Harris, Peter J. A. Cock, Brad Chapman, Christopher J. Fields, Karsten Hokamp, Hilmar Lapp, Monica C. Munoz-Torres, Bastian Greshake Tzovaras, Heather Wiencko
The 2017 Bioinformatics Open Source Conference (BOSC). F1000Research 6 (2017)
Nomi L. Harris, Peter J. A. Cock, Brad Chapman, Christopher J. Fields, Karsten Hokamp, Hilmar Lapp, Monica C. Munoz-Torres, Heather Wiencko
The 2016 Bioinformatics Open Source Conference (BOSC). F1000Research 5 (2016)
Prashanti Manda, Christopher J. Mungall, James P. Balhoff, Hilmar Lapp, Todd J. Vision
Investigating the Importance of Anatomical Homology for Cross-Species Phenotype Comparisons Using Semantic Similarity. PSB (2016)
Nomi L. Harris, Peter J. A. Cock, Hilmar Lapp, Brad Chapman, Rob Davey, Christopher J. Fields, Karsten Hokamp, Monica C. Munoz-Torres
The 2015 Bioinformatics Open Source Conference (BOSC 2015). PLoS Comput. Biol. 12 (2) (2016)
Nomi L. Harris, Peter J. A. Cock, Brad A. Chapman, Jeremy Goecks, Hans-Rudolf Hotz, Hilmar Lapp
The Bioinformatics Open Source Conference (BOSC) 2013. Bioinform. 31 (2) (2015)
Wasila M. Dahdul, T. Alexander Dececchi, Nizar Ibrahim, Hilmar Lapp, Paula M. Mabee
Moving the mountain: analysis of the effort required to transform comparative anatomy into computable anatomy. Database J. Biol. Databases Curation 2015 (2015)
James P. Balhoff, Wasila M. Dahdul, Thomas Dececchi, Hilmar Lapp, Paula M. Mabee, Todd J. Vision
Annotation of phenotypic diversity: decoupling data curation and ontology curation using Phenex. J. Biomed. Semant. 5 (2014)
James P. Balhoff, T. Alexander Dececchi, Paula M. Mabee, Hilmar Lapp
Presence-absence reasoning for evolutionary phenotypes. CoRR (2014)
Daniel S. Katz, Sou-Cheng T. Choi, Hilmar Lapp, Ketan Maheshwari, Frank Löffler, Matthew J. Turk, Marcus D. Hanwell, Nancy Wilkins-Diehr, James Hetherington, James Howison, Shel Swenson, Gabrielle Allen, Anne C. Elster, G. Bruce Berriman, Colin C. Venters
Summary of the First Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE1). CoRR (2014)
Arlin Stoltzfus, Hilmar Lapp, Naim Matasci, Helena F. Deus, Brian Sidlauskas, Christian M. Zmasek, Gaurav Vaidya, Enrico Pontelli, Karen Cranston, Rutger A. Vos, Campbell O. Webb, Luke J. Harmon, Megan Pirrung, Brian C. O'Meara, Matthew W. Pennell, Siavash Mirarab, Michael S. Rosenberg, James P. Balhoff, Holly M. Bik, Tracy A. Heath, Peter E. Midford, Joseph W. Brown, Emily Jane McTavish, Jeet Sukumaran, Mark Westneat, Michael E. Alfaro, Aaron Steele, Greg Jordan
Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient. BMC Bioinform. 14 (2013)
Peter E. Midford, Thomas Dececchi, James P. Balhoff, Wasila M. Dahdul, Nizar Ibrahim, Hilmar Lapp, John G. Lundberg, Paula M. Mabee, Paul C. Sereno, Monte Westerfield, Todd J. Vision, David C. Blackburn
The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes. J. Biomed. Semant. 4 (2013)
Daisie Huang, Hilmar Lapp
Software Engineering as Instrumentation for the Long Tail of Scientific Software. CoRR (2013)
Andreas Prlic, Hilmar Lapp
Software Section. PLoS Comput. Biol. 8 (11) (2012)
James P. Balhoff, Wasila M. Dahdul, Hilmar Lapp, Peter E. Midford, Todd J. Vision, Monte Westerfield, Paula M. Mabee
Employing Reasoning within the Phenoscape Knowledgebase. ICBO (2011)
Wasila M. Dahdul, James P. Balhoff, Hilmar Lapp, Peter E. Midford, Todd J. Vision, Monte Westerfield, Paula M. Mabee
Phenoscape: Use Cases and Anatomy Ontology Requirements for Linking Evolutionary and Model Organism Phenotypes. ICBO (2011)
Todd J. Vision, Judith A. Blake, Hilmar Lapp, Paula M. Mabee, Monte Westerfield
Similarity Between Semantic Description Sets: Addressing Needs Beyond Data Integration. LISC (2011)
Sook Jung, Naama Menda, Seth Redmond, Robert M. Buels, Maren Friesen, Yuri R. Bendaña, Lacey-Anne Sanderson, Hilmar Lapp, Taein Lee, Bob MacCallum, Kirstin E. Bett, Scott Cain, Dave Clements, Lukas A. Mueller, Dorrie Main
The Chado Natural Diversity module: a new generic database schema for large-scale phenotyping and genotyping data. Database J. Biol. Databases Curation 2011 (2011)
James P. Balhoff, Peter E. Midford, Hilmar Lapp
Integrating Anatomy and Phenotype Ontologies with Taxonomic Hierarchies. ICBO (2011)
Toshiaki Katayama, Kazuharu Arakawa, Mitsuteru Nakao, Keiichiro Ono, Kiyoko F. Aoki-Kinoshita, Yasunori Yamamoto, Atsuko Yamaguchi, Shuichi Kawashima, Hong-Woo Chun, Jan Aerts, Bruno Aranda, Lord H. Barboza, Raoul Jean Pierre Bonnal, Richard M. Bruskiewich, Jan Christian Bryne, José María Fernández, Akira Funahashi, Paul M. K. Gordon, Naohisa Goto, Andreas Groscurth, Alex Gutteridge, Richard C. G. Holland, Yoshinobu Kano, Edward A. Kawas, Arnaud Kerhornou, Eri Kibukawa, Akira R. Kinjo, Michael Kuhn, Hilmar Lapp, Heikki Lehväslaiho, Hiroyuki Nakamura, Yasukazu Nakamura, Tatsuya Nishizawa, Chikashi Nobata, Tamotsu Noguchi, Thomas M. Oinn, Shinobu Okamoto, Stuart Owen, Evangelos Pafilis, Matthew R. Pocock, Pjotr Prins, René Ranzinger, Florian Reisinger, Lukasz Salwínski, Mark J. Schreiber, Martin Senger, Yasumasa Shigemoto, Daron M. Standley, Hideaki Sugawara, Toshiyuki Tashiro, Oswaldo Trelles, Rutger A. Vos, Mark D. Wilkinson, William S. York, Christian M. Zmasek, Kiyoshi Asai, Toshihisa Takagi
The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. J. Biomed. Semant. 1 (2010)
Jason E. Stajich, Hilmar Lapp
Open source tools and toolkits for bioinformatics: significance, and where are we? Briefings Bioinform. 7 (3) (2006)
Norbert Brändle, Horst Bischof, Hilmar Lapp
Robust DNA microarray image analysis. Mach. Vis. Appl. 15 (1) (2003)
Horng-Yang Chen, Norbert Brändle, Horst Bischof, Hilmar Lapp
Robust Spot Fitting for Genetic Spot Array Images. ICIP (2000)
Norbert Brändle, Horng-Yang Chen, Horst Bischof, Hilmar Lapp
Robust Parametric and Semi-Parametric Spot Fitting for Spot Array Images. ISMB (2000)
Norbert Brändle, Hilmar Lapp, Horst Bischof
Automatic Grid Fitting for Genetic Spot Array Images Containing Guide Spots. CAIP (1999)