Helena F. Deus

Publication Activity (10 Years)

Years Active: 2008-2018
Publications (10 Years): 2

Top Topics

Gene Expression

Pattern Matching

Semantic Web Data

Top Venues

J. Biomed. Informatics

Publications

Michael Lauruhn, Paul Groth, Corey A. Harper, Helena F. Deus
Use of Internal Testing Data to Help Determine Compensation for Crowdsourcing Tasks. HumL@ISWC (2018)
Helena F. Deus, Corey A. Harper, Darin McBeath, Ron Daniel Jr.
Combining pattern matching with word embeddings for the extraction of experimental variables from scientific literature. IEEE BigData (2017)
Muhammad Saleem, Shanmukha S. Padmanabhuni, Axel-Cyrille Ngonga Ngomo, Aftab Iqbal, Jonas S. Almeida, Stefan Decker, Helena F. Deus
TopFed: TCGA Tailored Federated Query Processing and Linking to LOD. J. Biomed. Semant. 5 (2014)
Ali Hasnain, Maulik R. Kamdar, Panagiotis Hasapis, Dimitris Zeginis, Claude N. Warren Jr., Helena F. Deus, Dimitrios Ntalaperas, Konstantinos A. Tarabanis, Muntazir Mehdi, Stefan Decker
Linked Biomedical Dataspace: Lessons Learned Integrating Data for Drug Discovery. ISWC (1) (2014)
Maulik R. Kamdar, Dimitris Zeginis, Ali Hasnain, Stefan Decker, Helena F. Deus
ReVeaLD: A user-driven domain-specific interactive search platform for biomedical research. J. Biomed. Informatics 47 (2014)
Muhammad Saleem, Maulik R. Kamdar, Aftab Iqbal, Shanmukha S. Padmanabhuni, Helena F. Deus, Axel-Cyrille Ngonga Ngomo
Big linked cancer data: Integrating linked TCGA and PubMed. J. Web Semant. (2014)
Ali Hasnain, Syeda Sana e Zainab, Maulik R. Kamdar, Qaiser Mehmood, Claude N. Warren Jr., Qurratal Ain Fatimah, Helena F. Deus, Muntazir Mehdi, Stefan Decker
A Roadmap for Navigating the Life Sciences Linked Open Data Cloud. JIST (2014)
Arlin Stoltzfus, Hilmar Lapp, Naim Matasci, Helena F. Deus, Brian Sidlauskas, Christian M. Zmasek, Gaurav Vaidya, Enrico Pontelli, Karen Cranston, Rutger A. Vos, Campbell O. Webb, Luke J. Harmon, Megan Pirrung, Brian C. O'Meara, Matthew W. Pennell, Siavash Mirarab, Michael S. Rosenberg, James P. Balhoff, Holly M. Bik, Tracy A. Heath, Peter E. Midford, Joseph W. Brown, Emily Jane McTavish, Jeet Sukumaran, Mark Westneat, Michael E. Alfaro, Aaron Steele, Greg Jordan
Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient. BMC Bioinform. 14 (2013)
David E. Robbins, Alexander Grüneberg, Helena F. Deus, Murat M. Tanik, Jonas S. Almeida
A self-updating road map of The Cancer Genome Atlas. Bioinform. 29 (10) (2013)
Laleh Kazemzadeh, Helena F. Deus, Michel Dumontier, Frank Barry
Looking into Reactome through Biopax Lens. CSWS (2013)
Muhammad Saleem, Axel-Cyrille Ngonga Ngomo, Josiane Xavier Parreira, Helena F. Deus, Manfred Hauswirth
DAW: Duplicate-AWare Federated Query Processing over the Web of Data. ISWC (1) (2013)
David E. Robbins, Alexander Grüneberg, Helena F. Deus, Murat M. Tanik, Jonas S. Almeida
TCGA Toolbox: an Open Web App Framework for Distributing Big Data Analysis Pipelines for Cancer Genomics. BCB (2013)
Muhammad Saleem, Shanmukha S. Padmanabhuni, Axel-Cyrille Ngonga Ngomo, Jonas S. Almeida, Stefan Decker, Helena F. Deus
Linked cancer genome atlas database. I-SEMANTICS (2013)
Andrea Splendiani, Andra Waagmeester, Carina Haupt, Helena F. Deus
SemScape: Visualizating Semantic Web Data Landscapes with Cytoscape 3.0. SWAT4LS (2012)
Helena F. Deus, Eric Prud'hommeaux, Michael Miller, Jun Zhao, James Malone, Tomasz Adamusiak, Jamie P. McCusker, Sudeshna Das, Philippe Rocca-Serra, Ronan Fox, M. Scott Marshall
Translating standards into practice - One Semantic Web API for Gene Expression. J. Biomed. Informatics 45 (4) (2012)
M. Scott Marshall, Richard D. Boyce, Helena F. Deus, Jun Zhao, Egon L. Willighagen, Matthias Samwald, Elgar Pichler, Janos G. Hajagos, Eric Prud'hommeaux, Susie Stephens
Emerging practices for mapping and linking life sciences data using RDF - A case series. J. Web Semant. 14 (2012)
Helena F. Deus, Jun Zhao, Jamie P. McCusker, Ronan Fox, Eric Prud'hommeaux, James Malone, Sudeshna Das, Michael Miller, Tomasz Adamusiak, Philippe Rocca-Serra, M. Scott Marshall
Translating standards into practice: one semantic web API for gene expression. SWAT4LS (2011)
Helena F. Deus, Miria C. Correa, Romesh Stanislaus, Maria Miragaia, Wolfgang Maass, Hermínia de Lencastre, Ronan Fox, Jonas S. Almeida
S3QL: A distributed domain specific language for controlled semantic integration of life sciences data. BMC Bioinform. 12 (2011)
Jonas S. Almeida, Helena F. Deus, Wolfgang Maass
S3DB core: a framework for RDF generation and management in bioinformatics infrastructures. BMC Bioinform. 11 (2010)
Helena F. Deus, Diogo F. Veiga, Pablo R. Freire, John N. Weinstein, Gordon B. Mills, Jonas S. Almeida
Exposing the cancer genome atlas as a SPARQL endpoint. J. Biomed. Informatics 43 (6) (2010)
Miria C. Correa, Helena F. Deus, Ana Tereza Ribeiro de Vasconcelos, Yuki Hayashi, Jaffer A. Ajani, Srikrishna V. Patnana, Jonas S. Almeida
AGUIA: autonomous graphical user interface assembly for clinical trials semantic data services. BMC Medical Informatics Decis. Mak. 10 (2010)
Helena F. Deus, Jun Zhao, Satya S. Sahoo, Matthias Samwald, Eric Prud'hommeaux, Michael Miller, M. Scott Marshall, Kei-Hoi Cheung
Provenance of Microarray Experiments for a Better Understanding of Experiment Results. SWPM@ISWC (2010)
Diogo F. Veiga, Helena F. Deus, Caner Akdemir, Ana Tereza Ribeiro de Vasconcelos, Jonas S. Almeida
DASMiner: discovering and integrating data from DAS sources. BMC Syst. Biol. 3 (2009)
Romesh Stanislaus, Mark Carey, Helena F. Deus, Kevin R. Coombes, Bryan T. J. Hennessy, Gordon B. Mills, Jonas S. Almeida
RPPAML/RIMS: A metadata format and an information management system for reverse phase protein arrays. BMC Bioinform. 9 (2008)