Kei-Hoi Cheung

Publication Activity (10 Years)

Years Active: 1992-2024
Publications (10 Years): 11

Top Topics

Clinical Decision Support

Top Venues

J. Biomed. Semant.

Database J. Biol. Databases Curation

Publications

Sarah Mullin, Robert A. McDougal, Kei-Hoi Cheung, Halil Kilicoglu, Amanda Beck, Caroline J. Zeiss
Chemical entity normalization for successful translational development of Alzheimer's disease and dementia therapeutics. J. Biomed. Semant. 15 (1) (2024)
Katrin Hänsel, Sarah Dudgeon, Kei-Hoi Cheung, Thomas J. S. Durant, Wade L. Schulz
From Data to Wisdom: Biomedical Knowledge Graphs for Real-World Data Insights. J. Medical Syst. 47 (1) (2023)
Syed Ahmad Chan Bukhari, Shrikant Pawar, Jeff Mandell, Steven H. Kleinstein, Kei-Hoi Cheung
LinkedImm: a linked data graph database for integrating immunological data. BMC Bioinform. (9) (2021)
Randi Vita, James A. Overton, Patrick Dunn, Kei-Hoi Cheung, Steven H. Kleinstein, Alessandro Sette, Bjoern Peters
A structured model for immune exposures. Database J. Biol. Databases Curation 2020 (2020)
James A. Overton, Randi Vita, Patrick Dunn, Julie G. Burel, Syed Ahmad Chan Bukhari, Kei-Hoi Cheung, Steven H. Kleinstein, Alexander D. Diehl, Bjoern Peters
Reporting and connecting cell type names and gating definitions through ontologies. BMC Bioinform. (5) (2019)
Syed Ahmad Chan Bukhari, Jeff Mandell, Steven H. Kleinstein, Kei-Hoi Cheung
A linked data graph approach to integration of immunological data. BIBM (2019)
Syed Ahmad Chan Bukhari, Marcos Martínez Romero, Martin J. O'Connor, Attila L. Egyedi, Debra Willrett, John Graybeal, Mark A. Musen, Kei-Hoi Cheung, Steven H. Kleinstein
CEDAR OnDemand: a browser extension to generate ontology-based scientific metadata. BMC Bioinform. 19 (1) (2018)
Randi Vita, Bjoern Peters, James A. Overton, Kei-Hoi Cheung, Steven H. Kleinstein
Formalizing the Representation of Immune Exposures for Human Immunology Studies. ICBO (2018)
Mark A. Musen, Susanna-Assunta Sansone, Kei-Hoi Cheung, Steven H. Kleinstein, Morgan Crafts, Stephan C. Schürer, John Graybeal
CEDAR: Semantic Web Technology to Support Open Science. WWW (Companion Volume) (2018)
Roxanne Wadia, Mark A. Shifman, Forrest W. Levin, Luis N. Marenco, Cynthia Brandt, Kei-Hoi Cheung, Tamar H. Taddei, Michael Krauthammer
A Clinical Decision Support System for Monitoring Post-Colonoscopy Patient Follow-Up and Scheduling. CRI (2017)
Kei-Hoi Cheung, Shivakumar Keerthikumar, Paola Roncaglia, Sai Lakshmi Subramanian, Matthew E. Roth, Monisha Samuel, Sushma Anand, Lahiru Gangoda, Stephen Gould, Roger Alexander, David Galas, Mark B. Gerstein, Andrew F. Hill, Robert R. Kitchen, Jan Lötvall, Tushar Patel
Extending gene ontology in the context of extracellular RNA and vesicle communication. J. Biomed. Semant. 7 (2016)
Mark A. Musen, Carol A. Bean, Kei-Hoi Cheung, Michel Dumontier, Kim A. Durante, Olivier Gevaert, Alejandra N. González-Beltrán, Purvesh Khatri, Steven H. Kleinstein, Martin J. O'Connor, Yannick Pouliot, Philippe Rocca-Serra, Susanna-Assunta Sansone, Jeffrey A. Wiser
The center for expanded data annotation and retrieval. J. Am. Medical Informatics Assoc. 22 (6) (2015)
Christopher M. Colangelo, Mark A. Shifman, Kei-Hoi Cheung, Kathryn L. Stone, Nicholas Carriero, Erol E. Gulcicek, TuKiet T. Lam, Terence Wu, Robert D. Bjornson, Can Bruce, Angus C. Nairn, Jesse Rinehart, Perry L. Miller, Kenneth R. Williams
YPED: An Integrated Bioinformatics Suite and Database for Mass Spectrometry-based Proteomics Research. Genom. Proteom. Bioinform. 13 (1) (2015)
Gregory A. Ryslik, Yuwei Cheng, Kei-Hoi Cheung, Yorgo Modis, Hongyu Zhao
A graph theoretic approach to utilizing protein structure to identify non-random somatic mutations. BMC Bioinform. 15 (2014)
Gregory A. Ryslik, Yuwei Cheng, Kei-Hoi Cheung, Robert D. Bjornson, Daniel Zelterman, Yorgo Modis, Hongyu Zhao
A spatial simulation approach to account for protein structure when identifying non-random somatic mutations. BMC Bioinform. 15 (2014)
Gregory A. Ryslik, Yuwei Cheng, Kei-Hoi Cheung, Yorgo Modis, Hongyu Zhao
Utilizing protein structure to identify non-random somatic mutations. BMC Bioinform. 14 (2013)
Matthew Holford, Jamie P. McCusker, Kei-Hoi Cheung, Michael Krauthammer
A semantic web framework to integrate cancer omics data with biological knowledge. BMC Bioinform. 13 (S-1) (2012)
Matthew Scotch, Indra Neil Sarkar, Changjiang Mei, Robert Leaman, Kei-Hoi Cheung, Pierina Ortiz, Ashutosh Singraur, Graciela Gonzalez
Enhancing phylogeography by improving geographical information from GenBank. J. Biomed. Informatics 44 (Supplement-1) (2011)
Matthew Holford, Jamie P. McCusker, Kei-Hoi Cheung, Michael Krauthammer
Analysis Of Cancer Omics Data In A Semantic Web Framework CoRR (2010)
Matthew Holford, Jamie P. McCusker, Kei-Hoi Cheung, Michael Krauthammer
Analysis of Cancer Omics Data In A Semantic Web Framework. SWAT4LS (2010)
Helena F. Deus, Jun Zhao, Satya S. Sahoo, Matthias Samwald, Eric Prud'hommeaux, Michael Miller, M. Scott Marshall, Kei-Hoi Cheung
Provenance of Microarray Experiments for a Better Understanding of Experiment Results. SWPM@ISWC (2010)
Matthew Holford, Ekta Khurana, Kei-Hoi Cheung, Mark Gerstein
Using semantic web rules to reason on an ontology of pseudogenes. Bioinform. 26 (12) (2010)
Matthias Samwald, Huajun Chen, Alan Ruttenberg, Ernest Lim, Luis N. Marenco, Perry L. Miller, Gordon M. Shepherd, Kei-Hoi Cheung
Semantic SenseLab: Implementing the vision of the Semantic Web in neuroscience. Artif. Intell. Medicine 48 (1) (2010)
Matthias Samwald, Ernest Lim, Peter Masiar, Luis N. Marenco, Huajun Chen, Thomas M. Morse, Pradeep Mutalik, Gordon M. Shepherd, Perry L. Miller, Kei-Hoi Cheung
Entrez Neuron RDFa: A Pragmatic Semantic Web Application for Data Integration in Neuroscience Research. MIE (2009)
Zhang Zhang, Kei-Hoi Cheung, Jeffrey P. Townsend
Bringing Web 2.0 to bioinformatics. Briefings Bioinform. 10 (1) (2009)
Anja Jentzsch, Jun Zhao, Oktie Hassanzadeh, Kei-Hoi Cheung, Matthias Samwald, Bo Andersson
Linking Open Drug Data. I-SEMANTICS (2009)
Kei-Hoi Cheung, H. Robert Frost, M. Scott Marshall, Eric Prud'hommeaux, Matthias Samwald, Jun Zhao, Adrian Paschke
A journey to Semantic Web query federation in the life sciences. BMC Bioinform. 10 (S-10) (2009)
Kei-Hoi Cheung, Ernest Lim, Matthias Samwald, Huajun Chen, Luis N. Marenco, Matthew Holford, Thomas M. Morse, Pradeep Mutalik, Gordon M. Shepherd, Perry L. Miller
Approaches to neuroscience data integration. Briefings Bioinform. 10 (4) (2009)
Hugo Y. K. Lam, Ekta Khurana, Gang Fang, Philip Cayting, Nicholas Carriero, Kei-Hoi Cheung, Mark B. Gerstein
Pseudofam: the pseudogene families database. Nucleic Acids Res. 37 (Database-Issue) (2009)
Kei-Hoi Cheung, Eric Prud'hommeaux, Yimin Wang, Susie Stephens
Semantic Web for Health Care and Life Sciences: a review of the state of the art. Briefings Bioinform. 10 (2) (2009)
Huajun Chen, Kei-Hoi Cheung, Michel Dumontier, Eric Prud'hommeaux, Alan Ruttenberg, Susie Stephens, Yimin Wang
Report on semantic web for health care and life sciences workshop. WWW (2008)
Matthew Scotch, Kevin Y. Yip, Kei-Hoi Cheung
Case Report: Development of Grid-like Applications for Public Health Using Web 2.0 Mashup Techniques. J. Am. Medical Informatics Assoc. 15 (6) (2008)
Kei-Hoi Cheung, Vipul Kashyap, Joanne Luciano, Huajun Chen, Yimin Wang, Susie Stephens
Semantic mashup of biomedical data. J. Biomed. Informatics 41 (5) (2008)
Kei-Hoi Cheung, Kevin Y. Yip, Jeffrey P. Townsend, Matthew Scotch
HCLS 2.0/3.0: Health care and life sciences data mashup using Web 2.0/3.0. J. Biomed. Informatics 41 (5) (2008)
Mark Gerstein, Dov Greenbaum, Kei-Hoi Cheung, Perry L. Miller
An interdepartmental Ph.D. program in computational biology and bioinformatics: The Yale perspective. J. Biomed. Informatics 40 (1) (2007)
Andrew K. Smith, Kei-Hoi Cheung, Kevin Y. Yip, Martin H. Schultz, Mark Gerstein
LinkHub: a Semantic Web system that facilitates cross-database queries and information retrieval in proteomics. BMC Bioinform. 8 (S-3) (2007)
Alan Ruttenberg, Tim Clark, William J. Bug, Matthias Samwald, Olivier Bodenreider, Helen Chen, Donald Doherty, Kerstin Forsberg, Yong Gao, Vipul Kashyap, June Kinoshita, Joanne Luciano, M. Scott Marshall, Chimezie Ogbuji, Jonathan Rees, Susie Stephens, Gwendolyn T. Wong, Elizabeth Wu, Davide Zaccagnini, Tonya Hongsermeier, Eric Neumann, Ivan Herman, Kei-Hoi Cheung
Advancing translational research with the Semantic Web. BMC Bioinform. 8 (S-3) (2007)
Chiquito J. Crasto, Luis N. Marenco, Nian Liu, Thomas M. Morse, Kei-Hoi Cheung, Peter C. Lai, Gautam Bahl, Peter Masiar, Hugo Y. K. Lam, Ernest Lim, Huajun Chen, Prakash M. Nadkarni, Michele Migliore, Perry L. Miller, Gordon M. Shepherd
SenseLab: new developments in disseminating neuroscience information. Briefings Bioinform. 8 (3) (2007)
Andrew K. Smith, Kei-Hoi Cheung, Michael Krauthammer, Martin H. Schultz, Mark Gerstein
Leveraging the structure of the Semantic Web to enhance information retrieval for proteomics. Bioinform. 23 (22) (2007)
Hugo Y. K. Lam, Luis N. Marenco, Tim Clark, Yong Gao, June Kinoshita, Gordon M. Shepherd, Perry L. Miller, Elizabeth Wu, Gwendolyn T. Wong, Nian Liu, Chiquito J. Crasto, Thomas M. Morse, Susie Stephens, Kei-Hoi Cheung
AlzPharm: integration of neurodegeneration data using RDF. BMC Bioinform. 8 (S-3) (2007)
Kei-Hoi Cheung, Peishen Qi, David Tuck, Michael Krauthammer
A semantic web approach to biological pathway data reasoning and integration. J. Web Semant. 4 (3) (2006)
Hugo Y. K. Lam, Luis N. Marenco, Gordon M. Shepherd, Perry L. Miller, Kei-Hoi Cheung
Using Web Ontology Language to Integrate Heterogeneous Databases in the Neurosciences. AMIA (2006)
Kevin Y. Yip, Peishen Qi, Martin H. Schultz, David W. Cheung, Kei-Hoi Cheung
SemBiosphere: A Semantic Web Approach to Recommending Microarray Clustering Services. Pacific Symposium on Biocomputing (2006)
Nicholas Carriero, Michael V. Osier, Kei-Hoi Cheung, Perry L. Miller, Mark Gerstein, Hongyu Zhao, Baolin Wu, Scott Rifkin, Joseph T. Chang, Heping Zhang, Kevin P. White, Kenneth R. Williams, Martin H. Schultz
Case Report: A High Productivity/Low Maintenance Approach to High-performance Computation for Biomedicine: Four Case Studies. J. Am. Medical Informatics Assoc. 12 (1) (2005)
Kei-Hoi Cheung, Kevin Y. Yip, Andrew K. Smith, Remko de Knikker, Andy Masiar, Mark Gerstein
YeastHub: a semantic web use case for integrating data in the life sciences domain. ISMB (Supplement of Bioinformatics) (2005)
Mark A. Shifman, Kexin Sun, Christopher M. Colangelo, Kei-Hoi Cheung, Perry L. Miller, Kenneth R. Williams
YPED: A Proteomics Database for Protein Expression Analysis. AMIA (2005)
Kei-Hoi Cheung, Janet Hager, Deyun Pan, Ranjana Srivastava, Shrikant M. Mane, Yuli Li, Perry L. Miller, Kenneth R. Williams
KARMA: a web server application for comparing and annotating heterogeneous microarray platforms. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)
Kei-Hoi Cheung, Deyun Pan, Andrew K. Smith, Michael R. Seringhaus, Shawn M. Douglas, Mark Gerstein
A XML-Based Approach to Integrating Heterogeneous Yeast Genome Data. METMBS (2004)
Kevin Y. Yip, David W. Cheung, Michael K. Ng, Kei-Hoi Cheung
Identifying projected clusters from gene expression profiles. J. Biomed. Informatics 37 (5) (2004)
Kevin Y. Yip, David W. Cheung, Michael K. Ng, Kei-Hoi Cheung
Identifying Projected Clusters from Gene Expression Profiles. BIBE (2004)
Remko de Knikker, Youjun Guo, Jin-long Li, Albert K. H. Kwan, Kevin Y. Yip, David W. Cheung, Kei-Hoi Cheung
A web services choreography scenario for interoperating bioinformatics applications. BMC Bioinform. 5 (2004)
Michael V. Osier, Hongyu Zhao, Kei-Hoi Cheung
Handling multiple testing while interpreting microarrays with the Gene Ontology Database. BMC Bioinform. 5 (2004)
Deyun Pan, Ning Sun, Kei-Hoi Cheung, Zhong Guan, Ligeng Ma, Matthew Holford, Xingwang Deng, Hongyu Zhao
. BMC Bioinform. 4 (2003)
Haseena Rajeevan, Michael V. Osier, Kei-Hoi Cheung, H. Deng, L. Druskin, R. Heinzen, Judith R. Kidd, S. Stein, Andrew J. Pakstis, Nick P. Tosches, C.-C. Yeh, Perry L. Miller, Kenneth K. Kidd
ALFRED: the ALelle FREquency Database. Update. Nucleic Acids Res. 31 (1) (2003)
Kei-Hoi Cheung, Janet Hager, Kenneth Nelson, Kevin P. White, Yuli Li, Michael Snyder, Kenneth R. Williams, Perry L. Miller
A dynamic approach to mapping coordinates between microplates and microarrays. J. Biomed. Informatics 35 (5-6) (2002)
Kei-Hoi Cheung, Kevin P. White, Janet Hager, Mark Gerstein, Valerie Reinke, Kenneth Nelson, Peter Masiar, Ranjana Srivastava, Yuli Li, Ju Li, Hongyu Zhao, Jinming Li, David B. Allison, Michael Snyder, Perry L. Miller, Kenneth R. Williams
YMD: a microarray database for large-scale gene expression analysis. AMIA (2002)
Anuj Kumar, Kei-Hoi Cheung, Nick P. Tosches, Peter Masiar, Yang Liu, Perry L. Miller, Michael Snyder
The TRIPLES database: a community resource for yeast molecular biology. Nucleic Acids Res. 30 (1) (2002)
Kei-Hoi Cheung, Yang Liu, Anuj Kumar, Michael Snyder, Mark Gerstein, Perry L. Miller
An XML Application For Genomic Data Interoperation. BIBE (2001)
Michael V. Osier, Kei-Hoi Cheung, Judith R. Kidd, Andrew J. Pakstis, Perry L. Miller, Kenneth K. Kidd
ALFRED: an allele frequency database for diverse populations and DNA polymorphisms - an update. Nucleic Acids Res. 29 (1) (2001)
Kei-Hoi Cheung, Aniruddha M. Deshpande, Nick P. Tosches, S. Nath, A. Agrawal, Perry L. Miller, Anuj Kumar, Michael Snyder
A metadata framework for interoperating heterogeneous genome data using XML. AMIA (2001)
Kei-Hoi Cheung, Michael V. Osier, Judith R. Kidd, Andrew J. Pakstis, Perry L. Miller, Kenneth K. Kidd
ALFRED: an allele frequency database for diverse populations and DNA polymorphisms. Nucleic Acids Res. 28 (1) (2000)
Kei-Hoi Cheung, Dong-Guk Shin
A Graph-based Meta-data Framework for Interoperation between Genome Databases. BIBE (2000)
Kei-Hoi Cheung, Perry L. Miller, A. H. Sherman, Stephen B. Weston, Eric Stratmann, Martin H. Schultz, Michael Snyder, Anuj Kumar
Graphically-enabled integration of bioinformatics tools allowing parallel execution. AMIA (2000)
Anuj Kumar, Kei-Hoi Cheung, Petra Ross-MacDonald, Paulo S. R. Coelho, Perry L. Miller, Michael Snyder
TRIPLES: a database of gene function in Saccharomyces cerevisiae. Nucleic Acids Res. 28 (1) (2000)
Kei-Hoi Cheung, Dong-Guk Shin
A Framework Designed to Represent Both Data and Meta-Data to Enhance Database Interoperability. IADT (1998)
Kei-Hoi Cheung, Dong-Guk Shin
A simple model capable of expressing meta-data for database interoperability. CATA (1998)
Kei-Hoi Cheung, Prakash M. Nadkarni, Dong-Guk Shin
A metadata approach to query interoperation between molecular biology databases. Bioinform. 14 (6) (1998)
Kei-Hoi Cheung, Prakash M. Nadkarni, Perry L. Miller, Dong-Guk Shin
Automatic query mapping among genomic databases: a pilot exploration. AMIA (1998)
Prakash M. Nadkarni, Kei-Hoi Cheung, C. Castiglione, Perry L. Miller, Kenneth K. Kidd
DNA Workbench: A Database Package to Manage Regional Physical Mapping. J. Comput. Biol. 3 (2) (1996)
Perry L. Miller, Prakash M. Nadkarni, Kenneth K. Kidd, Kei-Hoi Cheung, David C. Ward, Amy Banks, Patricia Bray-Ward, Lisa Cupelli, Valerie Herdman, Ivonne Marondel, Kate Montcomery, Beatrice Renault, Sunc-Joo Yoon, Kenneth S. Krauter, Raju Kucherlapati
Application of Technology: Internet-based Support for Bioscience Research: A Collaborative Genome center for Human Chromosome 12. J. Am. Medical Informatics Assoc. 2 (6) (1995)
Dean F. Sittig, Kei-Hoi Cheung, Lewis Berman
Fuzzy classification of heart rate trends and artifacts. CBMS (1992)