Dong-Guk Shin

Publication Activity (10 Years)

Years Active: 1988-2023
Publications (10 Years): 18

Top Topics

Biological Processes

Transcription Factors

Top Venues

Int. J. Data Min. Bioinform.

Publications

Chenyu Zhang, Honglin Wang, Seung-Hyun Hong, Riqiang Yan, Dong-Guk Shin
Using Biological Processes as Prior Knowledge Identifies New Microglial Immune Signatures at Single Cell Level in Alzheimer's Disease. BIBM (2023)
Timothy James Becker, Dashzeveg Bayarsaihan, Dong-Guk Shin
A framework for associating structural variants with cell-specific transcription factors and histone modifications in defect phenotypes. BIBM (2022)
Honglin Wang, Pujan Joshi, Chenyu Zhang, Peter F. Maye, David W. Rowe, Dong-Guk Shin
rCom: a route-based framework inferring cell type communication and regulatory network using single cell data. BCB (2022)
Chenyu Zhang, Pujan Joshi, Honglin Wang, Seung-Hyun Hong, Riqiang Yan, Dong-Guk Shin
Pola Viz Reveals Microglia Polarization at Single Cell Level in Alzheimer's Disease. BIBM (2022)
Honglin Wang, Pujan Joshi, Seung-Hyun Hong, Dong-Ju Shin, Dong-Guk Shin
ctBuilder: A framework for building pathway crosstalks by combining single cell data with bulk cell data. BIBM (2021)
Yue Zhao, Dong-Guk Shin
Deep Pathway Analysis V2.0: A Pathway Analysis Framework Incorporating Multi-Dimensional Omics Data. IEEE ACM Trans. Comput. Biol. Bioinform. 18 (1) (2021)
Pujan Joshi, Honglin Wang, Salvatore Jaramillo, Seung-Hyun Hong, Charles Giardina, Dong-Guk Shin
Identification of Crosstalk between Biological Pathway Routes in Cancer Cohorts. BIBM (2021)
Timothy James Becker, Dong-Guk Shin
Structural variation calling and genotyping by moment-based deep convolutional neural networks. Int. J. Data Min. Bioinform. 25 (1/2) (2021)
Timothy James Becker, Dong-Guk Shin
TensorSV: structural variation inference using tensors and variable topology neural networks. BIBM (2020)
Pujan Joshi, Brent Basso, Honglin Wang, Seung-Hyun Hong, Charles Giardina, Dong-Guk Shin
Identification of Key Biological Pathway Routes in Cancer Cohorts. BIBM (2020)
Honglin Wang, Pujan Joshi, Seung-Hyun Hong, Peter F. Maye, David W. Rowe, Dong-Guk Shin
cTAP: A Machine Learning Framework for Predicting Target Genes of a Transcription Factor using a Cohort of Gene Expression Data Sets. BIBM (2020)
Pujan Joshi, Honglin Wang, Brent Basso, Seung-Hyun Hong, Charles Giardina, Dong-Guk Shin
A Framework for Route Based Pathway Analysis of Gene Expression Data. ICCBB (2020)
Timothy James Becker, Dong-Guk Shin
Efficient methods for hierarchical multi-omic feature extraction and visualisation. Int. J. Data Min. Bioinform. 23 (4) (2020)
Yue Zhao, Pujan Joshi, Dong-Guk Shin
Recurrent Neural Network for Gene Regulation Network Construction on Time Series Expression Data. BIBM (2019)
Asa Thibodeau, Dong-Guk Shin
TriPOINT: a software tool to prioritize important genes in pathways and their non-coding regulators. Bioinform. 35 (15) (2019)
Timothy James Becker, Dong-Guk Shin
HFM: Hierarchical Feature Moment Extraction for Multi-Omic Data Visualization. BIBM (2019)
Yue Zhao, Tham H. Hoang, Pujan Joshi, Seung-Hyun Hong, Dong-Guk Shin
Deep pathway analysis incorporating mutation information and gene expression data. BIBM (2016)
Asa Thibodeau, Eladio J. Márquez, Oscar Luo, Yijun Ruan, Francesca Menghi, Dong-Guk Shin, Michael L. Stitzel, Paola Vera-Licona, Duygu Ucar
QuIN: A Web Server for Querying and Visualizing Chromatin Interaction Networks. PLoS Comput. Biol. 12 (6) (2016)
Joseph Leone, Dong-Guk Shin
A Phrase-based Ontology Enabled Semantic Processing System for Web Search. Trans. Mach. Learn. Data Min. 6 (2) (2013)
Pujan Joshi, Baikang Pei, Seung-Hyun Hong, Ivo Kalajzic, Dong-Ju Shin, David W. Rowe, Dong-Guk Shin
A software framework integrating gene expression patterns, binding site analysis and gene ontology to hypothesize gene regulation relationships. BIBM (2013)
Baikang Pei, Dong-Guk Shin
Reconstruction of Biological Networks by Incorporating Prior Knowledge into Bayesian Network Models. J. Comput. Biol. 19 (12) (2012)
Joseph Leone, Dong-Guk Shin
A Semantic Processing System (SPS) for Biomedical Literature Web Search. ICDM (Poster and Industry Proceedings) (2011)
Baikang Pei, David W. Rowe, Dong-Guk Shin
Learning Bayesian networks with integration of indirect prior knowledge. Int. J. Data Min. Bioinform. 4 (5) (2010)
Baikang Pei, Dong-Guk Shin
Reconstruction of Biological Networks Structure by Using Bayesian Network Models with a Two-step Learning Procedure. BIOCOMP (2010)
Saira Ali Kazmi, Yoo-Ah Kim, Dong-Guk Shin
Meta analysis algorithms for microarray gene expression data using Gene Regulatory Networks. Int. J. Data Min. Bioinform. 4 (5) (2010)
Dong-Guk Shin, Seung-Hyun Hong, Pujan Joshi, Ravi Nori, Baikang Pei, Hsin-Wei Wang, Patrick Harrington, Lynn Kuo, Ivo Kalajzic, David W. Rowe
PBC: A Software Framework Facilitating Pattern-Based Clustering for Microarray Data Analysis. IJCBS (2009)
Dong-Guk Shin, Saira Ali Kazmi, Baikang Pei, Yoo-Ah Kim, Jeffrey Maddox, Ravi Nori, Alan Wong, Winfried Krueger, David W. Rowe
Computing Consistency Between Microarray Data and Known Gene Regulation Relationships. IEEE Trans. Inf. Technol. Biomed. 13 (6) (2009)
Lung-Yung Chu, Dong-Guk Shin
An Improved Heuristic Approach for the Steiner Problem in Graphs. Int. J. Comput. Their Appl. 16 (3) (2009)
Saira Ali Kazmi, Yoo-Ah Kim, Baikang Pei, Ravi Nori, David W. Rowe, Hsin-Wei Wang, Alan Wong, Dong-Guk Shin
Meta Analysis of Microarray Data Using Gene Regulation Pathways. BIBM (2008)
Baikang Pei, David W. Rowe, Dong-Guk Shin
Reverse Engineering of Gene Regulatory Network by Integration of Prior Global Gene Regulatory Information. BIBM (2008)
Dong-Guk Shin, John Bluis, Yoo Ah Kim, Winfried Krueger, Jeffrey Maddox, Ravi Nori, Nathan Viniconis, Hsin-Wei Wang, Alan Wong, David W. Rowe
A Computational Inference Framework for analyzing Gene Regulation Pathway using Microarray Data. BIBE (2006)
John Bluis, Dong-Guk Shin
Nodal Distance Algorithm: Calculating a Phylogenetic Tree Comparison Metri. BIBE (2003)
Taysir Hassan A. Soliman, Dong-Guk Shin
A Comparative Study for Mining Biological Data. IS (2002)
John Bluis, Ravi Nori, Hsin-Wei Wang, Pinglei Zhou, J. Peter Gogarten, Dong-Guk Shin
Comparing Trees in a Phylogenetic Relationship Repository. BIBE (2001)
Dong-Guk Shin, Ravi Shankar Nori
CBM: A Visual Query Interface Model based on Annotated Cartoon Diagrams. Advanced Visual Interfaces (2000)
Kei-Hoi Cheung, Dong-Guk Shin
A Graph-based Meta-data Framework for Interoperation between Genome Databases. BIBE (2000)
Changhwan Lee, Dong-Guk Shin
Using Hellinger distance in a nearest neighbour classifier for relational databases. Knowl. Based Syst. 12 (7) (1999)
Changhwan Lee, Dong-Guk Shin
A Multistrategy Approach to Classification Learning in Databases. Data Knowl. Eng. 31 (1) (1999)
Fei Shi, Dong-Guk Shin
Centroid Trees with Application to String Processing. Stringology (1999)
Wally Grajewski, Dong-Guk Shin, Lei Liu
Xyntagma: a Graphical Query Interface for the ACeDB Genome Databases. CBMS (1999)
Kei-Hoi Cheung, Dong-Guk Shin
A Framework Designed to Represent Both Data and Meta-Data to Enhance Database Interoperability. IADT (1998)
Dong-Guk Shin, Wally Grajewski, Lung-Yung Chu
An epistemological display query interface. AVI (1998)
Kei-Hoi Cheung, Dong-Guk Shin
A simple model capable of expressing meta-data for database interoperability. CATA (1998)
Richard T. Landers, Dong-Guk Shin
A lightweight computational model for achieving location transparency in distributed environments. CATA (1998)
Kei-Hoi Cheung, Prakash M. Nadkarni, Dong-Guk Shin
A metadata approach to query interoperation between molecular biology databases. Bioinform. 14 (6) (1998)
Dong-Guk Shin, Lung-Yung Chu
Establishing Logical Connectivity between Query Keywords and Database Contents. Canadian Conference on AI (1998)
Lung-Yung Chu, Dong-Guk Shin
An effective heuristic algorithm for finding a steiner tree in graphs. CATA (1998)
Jeong Seok Lim, Dong-Guk Shin
A Methodology of Constructing Canonical Form Database Schemas in a Multiple Heterogenous Database Environment. IADT (1998)
Dong-Guk Shin, Lei Liu, Leslie M. Loew, James C. Schaff
Virtual Cell: A General Framework for Simulating and Visualizing Cellular Physiology. VDB (1998)
Jeong Seok Lim, Dong-Guk Shin
A Methodology of Constructing Canonical Form Database Schemas in a Multiple Heterogeneous Database Environment. J. Database Manag. 9 (4) (1998)
Kei-Hoi Cheung, Prakash M. Nadkarni, Perry L. Miller, Dong-Guk Shin
Automatic query mapping among genomic databases: a pilot exploration. AMIA (1998)
Dong-Guk Shin
Comparative study of relational and object-oriented modelings of genomic data. HICSS (5) (1995)
Changhwan Lee, Dong-Guk Shin
EEL: An Instance-Based Learning Method for Databases. IEA/AIE (1994)
Changhwan Lee, Dong-Guk Shin
A Context-Sensitive Discretization of Numeric Attributes for Classification Learning. ECAI (1994)
Dong-Guk Shin
An Expection-Driven Response Understanding Paradigm. IEEE Trans. Knowl. Data Eng. 6 (3) (1994)
Dong-Guk Shin, Rohit Gupta, T. C. Ting
Achieving Interoperability between Heterogeneous Object-Oriented Genomic Databases. HICSS (5) (1994)
Dong-Guk Shin, François Rechenmann
Data and Knowledge Base Issues in Genomics: Introduction. HICSS (5) (1994)
Dong-Guk Shin, Changhwan Lee, Jinghui Zhang, Kenneth E. Rudd, Claire M. Berg
Redesigning, implementing and integrating Escherichia coli genome software tools with an object-oriented database system. Comput. Appl. Biosci. 8 (3) (1992)
Dong-Guk Shin, Keki B. Irani
Fragmenting Relations Horizontally Using a Knowledge-Based Approach. IEEE Trans. Software Eng. 17 (9) (1991)
Dong-Guk Shin, Joseph Leone
Am/AG Model: a Hierarchical Social System Metaphor for Distributed Problem Solving. Int. J. Pattern Recognit. Artif. Intell. 4 (3) (1990)
Dong-Guk Shin, S. K. Wallfesh
An Expectation-Driven Approach to Q-A Processing. ICSI (1990)
Dong-Guk Shin, Fred J. Maryanski
Knowledge-aided engineering environment for design and manufacturing. COMPSAC (1988)